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Study

Study Name: Rumen microbial communities from cattle in Penicuik, Scotland, United Kingdom

Projects

Biosamples

Organisms

Biosamples: 240 Seq. Projects: 240
STUDY INFORMATION
GOLD Study ID Gs0154273
Study Name Rumen microbial communities from cattle in Penicuik, Scotland, United Kingdom
Other Names
NCBI Umbrella Bioproject Name
NCBI Umbrella Bioproject ID
SRA Studies
SRA Study Id ERP113798  (Link to NCBI )
Study Title Metagenomic sequencing of the rumen of 240 cattle from Scotland
Study Abstract Ruminants provide essential nutrition for billions of people worldwide. The rumen is a specialised stomach adapted to the breakdown of plant-derived complex polysaccharides, and collectively the rumen microbiota encode the thousands of enzymes responsible. Here we present a comprehensive analysis of over 6.5 terabytes of Illumina and Nanopore sequence data, including assembly of 4941 metagenome-assembled genomes, and several single-contig, whole-chromosome assemblies of novel rumen bacteria. We also present the largest dataset of predicted proteins from the rumen, and provide rich annotation against public datasets. Together these data will form an essential part of future studies of rumen microbiome structure and function.
  
Legacy ER Study ID
Legacy GOLD ID
Added By JGI automated process on 2021-07-27
Last Modified By
PI
Description Rumen microbial communities from cattle in Penicuik, Scotland, United Kingdom
Relevance
Study Information Visibility Public
Metagenomic Study Yes
Publication
Is GEBA
Is HMP
ECOSYSTEM CLASSIFICATION
Ecosystem Host-associated
Ecosystem Category Mammals
Ecosystem Type Digestive system
Ecosystem Subtype Stomach
Specific Ecosystem Rumen
STUDY COMPOSITION
Number of Biosamples 240
Number of Organisms 0
Number of Seq Projects 240
Number of Analysis Projects 0
Number of Related Studies 0

 

 

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