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Study

Study Name: Seawater microbial communities from epipelagic zone of Mediterranean Sea

Projects

Biosamples

Organisms

Biosamples: 28 Seq. Projects: 28
STUDY INFORMATION
GOLD Study ID Gs0153651
Study Name Seawater microbial communities from epipelagic zone of Mediterranean Sea
Other Names
NCBI Umbrella Bioproject Name
NCBI Umbrella Bioproject Accession
SRA Studies
SRA Study Id ERP090011  (Link to NCBI )
Study Title EMOSE (2017) Inter-Comparison of Marine Plankton Metagenome Analysis Methods
Study Abstract This study includes experiments from the following five sequencing strategies: 1) Shotgun DNA sequencing; 2) Amplicon sequencing after 18S amplification by PCR using 1391F/EukB primer set. Library were constructed according to Illumina Library protocol without any sizing; 3) Amplicon sequencing after 16S amplification by PCR using 515F/926R primer set. Library were constructed according to Illumina Library protocol without any sizing; 4) Amplicon sequencing after 16S amplification by PCR using 515F/926R primer set. Library were constructed according to Illumina Library protocol with a sizing step selecting the 450-650 bp fragments; and 5) Amplicon sequencing after 16S amplification by PCR using 515F/926R primer set. Library were constructed according to Illumina Library protocol with a sizing step selecting the 650-850 bp fragments.
  
Legacy ER Study ID
Legacy GOLD ID
Added By JGI automated process on 2021-03-16
Last Modified By
PI
Description Seawater microbial communities from epipelagic zone of Mediterranean Sea, collected on board the RV Nereis II (Observatoire Oceanologique de Banyuls)
Relevance
Study Information Visibility Public
Metagenomic Study Yes
Publication
Is GEBA
Is HMP
ECOSYSTEM CLASSIFICATION
Ecosystem Environmental
Ecosystem Category Aquatic
Ecosystem Type Marine
Ecosystem Subtype Epipelagic
Specific Ecosystem Unclassified
Ecosystem Path ID 5331
STUDY COMPOSITION
Number of Biosamples 28
Number of Organisms 0
Number of Seq Projects 28
Number of Analysis Projects 28
Number of Related Studies 0

 

 

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