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Study

Study Name: Broncho-alveolar lavage microbial communities from a patient in Geneva University Hospitals, Switzerland

Projects

Biosamples

Organisms

Biosamples: 2 Seq. Projects: 2
STUDY INFORMATION
GOLD Study ID Gs0150705
Study Name Broncho-alveolar lavage microbial communities from a patient in Geneva University Hospitals, Switzerland
Other Names
NCBI Umbrella Bioproject Name
NCBI Umbrella Bioproject ID
SRA Studies
SRA Study Id ERP023074  (Link to NCBI )
Study Title Detection of bacterial pathogens from broncho-alveolar lavage by next-generation sequencing
Study Abstract The application of culture-free methods, notably whole-metagenome shotgun (WMGS) sequencing, in routine clinical analysis is still limited although they have some advantage over culture-based approach. A combination of an appropriate DNA extraction procedure, sequencing and bioinformatics tools is essential for removal of human DNA and improved bacterial species identification. We tackled these issues by applying a specifically-designed clinical metagenomics pipeline, from DNA extraction to bioinformatics methods, on a broncho-alveolar lavage (BAL) sample from a severely immunocompromised patient who developed an atypical nosocomial pneumonia.
  
Legacy ER Study ID
Legacy GOLD ID
Added By JGI automated process on 2020-12-02
Last Modified By
PI
Description Broncho-alveolar lavage microbial communities from a patient in Geneva University Hospitals, Switzerland
Relevance
Study Information Link
Study Information Visibility Public
Metagenomic Study Yes
Publication
Is GEBA
Is HMP
ECOSYSTEM CLASSIFICATION
Ecosystem Host-associated
Ecosystem Category Human
Ecosystem Type Respiratory system
Ecosystem Subtype Unclassified
Specific Ecosystem Unclassified
STUDY COMPOSITION
Number of Biosamples 2
Number of Organisms 0
Number of Seq Projects 2
Number of Analysis Projects 1
Number of Related Studies 0

 

 

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