The following elements will have their visibility changed, please review the list before confirming the visibility change

Study

Study Name: Soil and rhizosphere microbial communities from wheat and chickpea farmland in Kangaroo Flat, South Australia

Projects

Biosamples

Organisms

Biosamples: 18 Seq. Projects: 18
STUDY INFORMATION
GOLD Study ID Gs0150687
Study Name Soil and rhizosphere microbial communities from wheat and chickpea farmland in Kangaroo Flat, South Australia
Other Names
NCBI Umbrella Bioproject Name
NCBI Umbrella Bioproject ID
SRA Studies
SRA Study Id ERP112988  (Link to NCBI )
Study Title a metagenomic gene catalogue of soil microbiota from different niches on a farmland of wheat and chickpea, including bulk soil, detritusphere, and rhizospheres
Study Abstract This study establishes a soil microbial gene catalogue that fully covers the non-redundant genes, based on the bulk soil and living-decaying rhizosphere soil niches in a cropping soil. The soil microbial metagenome was comparatively more complex and diverse (19.8 million genes and 10.2 Gbp total length) than individual samples of ocean water or the human gut. The detritusphere microbiome regulated the composition and function of the rhizosphere microbiome to a greater extent than plant type did: rhizosphere microbiomes in wheat and chickpea were homogenous (65-87% similarity) under simulated no-tillage management but were heterogeneous (3-24% similarity) under tillage, a process that disrupted the detritusphere. Microbial diversity and function were modified by plant root exudation and root channel exploration. This study describes the diversity and function of a high-quality soil microbial metagenome, and the results reveal the importance of the detritusphere microbiome in determining the microbiome of developing root systems, which ultimately govern biomass and grain production.
  
Legacy ER Study ID
Legacy GOLD ID
Added By JGI automated process on 2020-12-02
Last Modified By
PI
Description The goal of this study is to establish a soil microbial gene catalogue that fully covers the non-redundant genes, based on the bulk soil and living-decaying rhizosphere soil niches in a cropping soil
Relevance
Study Information Link
Study Information Visibility Public
Metagenomic Study Yes
Publication
Is GEBA
Is HMP
ECOSYSTEM CLASSIFICATION
Ecosystem Environmental
Ecosystem Category Terrestrial
Ecosystem Type Soil
Ecosystem Subtype Unclassified
Specific Ecosystem Agricultural land
STUDY COMPOSITION
Number of Biosamples 18
Number of Organisms 0
Number of Seq Projects 18
Number of Analysis Projects 18
Number of Related Studies 0

 

 

  You are going to add the following user to ALL Sequencing Projects, Biosamples and Analysis Projects that
sit under this study (a cascading permission update).

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to all Sequencing Projects,
Biosamples and Analysis Projects under this study.

 

Contact Name/Email:

Do you want to continue?