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Study

Study Name: Freshwater microbial communities from various lakes and resevoirs in Europe

Projects

Biosamples

Organisms

Biosamples: 33 Seq. Projects: 33
STUDY INFORMATION
GOLD Study ID Gs0150014
Study Name Freshwater microbial communities from various lakes and resevoirs in Europe
Other Names
NCBI Umbrella Bioproject Name
NCBI Umbrella Bioproject ID
SRA Studies
SRA Study Id ERP118882  (Link to NCBI )
Study Title Freshwater Metagenomes from European Lakes and Reservoirs (including time-series metagenomes)
Study Abstract This study describes the microbial communities of different lakes and reservoirs in Europe using high throughput metagenome sequencing. Water samples from different depths representing the epi- and hypolimnion were collected. Approximately 10L of water were pre-filtered through a plankton net (20 µm) and a 5-µm filter and then filtered onto filters with a pore size of 0.22 µm. DNA was extracted from the 0.22 µm (small, planktonic fraction) and 5 µm (large, particulate fraction) filters to obtain genomic DNA of the microbial community. The study also includes time-series metagenomes.
  
Legacy ER Study ID
Legacy GOLD ID
Added By JGI automated process on 2020-10-12
Last Modified By
PI
Description The goal of this study is to describe the microbial communities of different lakes and reservoirs in Europe using high throughput metagenome sequencing
Relevance
Study Information Link
Study Information Visibility Public
Metagenomic Study Yes
Publication
Is GEBA
Is HMP
ECOSYSTEM CLASSIFICATION
Ecosystem Environmental
Ecosystem Category Aquatic
Ecosystem Type Freshwater
Ecosystem Subtype Lake
Specific Ecosystem Unclassified
STUDY COMPOSITION
Number of Biosamples 33
Number of Organisms 0
Number of Seq Projects 33
Number of Analysis Projects 0
Number of Related Studies 0

 

 

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