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Study

Study Name: Genomic diversity of phyloplane-associated Pantoea species in Pakistan cotton crop

Projects

Biosamples

Organisms

Biosamples: 0 Seq. Projects: 43
STUDY INFORMATION
GOLD Study ID Gs0148348
Study Name Genomic diversity of phyloplane-associated Pantoea species in Pakistan cotton crop
Other Names
NCBI Umbrella Bioproject Name
NCBI Umbrella Bioproject Accession
SRA Studies
SRA Study Id SRP220514  (Link to NCBI )
Study Title Genomic diversity of phyloplane-associated Pantoea species in Pakistan cotton crop
Study Abstract
  
Legacy ER Study ID
Legacy GOLD ID
Added By JGI automated process on 2020-07-06
Last Modified By
PI Unknown
Description Bacterial leaf blight (BLB) of cotton is an important bacterial disease occurring in all cotton producing countries of the world, including Pakistan. BLB can be one of the most destructive infections that cotton encounters in fields. Infected cotton samples were collected from five different districts of Punjab, Pakistan. Whole genome sequences (WGS) were generated for 43 isolates using Illumina HiSeq 4000. Different epiphytic Pantoea species were found to be associated with symptomatic leaves of cotton. The genome of Pantoea species have single circular chromosome ~4.8Mbp with average genomic GC content of 55.3%.
Relevance
Study Information Visibility Public
Metagenomic Study No
Publication
Is GEBA
Is HMP
ECOSYSTEM CLASSIFICATION
Ecosystem
Ecosystem Category
Ecosystem Type
Ecosystem Subtype
Specific Ecosystem
Ecosystem Path ID 1
STUDY COMPOSITION
Number of Biosamples 0
Number of Organisms 43
Number of Seq Projects 43
Number of Analysis Projects 43
Number of Related Studies 0

 

 

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