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Study

Study Name: Marine microbial and viral communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean

Projects

Biosamples

Organisms

Biosamples: 42 Seq. Projects: 42
STUDY INFORMATION
GOLD Study ID Gs0135755
Study Name Marine microbial and viral communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean
Other Names
NCBI Umbrella Bioproject Name
NCBI Umbrella Bioproject ID
SRA Studies
SRA Study Id SRP281649  (Link to NCBI )
Study Title Crustal fluids microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR10_6 metagenome
Study Abstract
  
SRA Study Id SRP281670  (Link to NCBI )
Study Title Sediment microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR13_sedM3 metagenome
Study Abstract
  
SRA Study Id SRP281650  (Link to NCBI )
Study Title Seawater microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR09_25 metagenome
Study Abstract
  
SRA Study Id SRP281671  (Link to NCBI )
Study Title Seawater microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR14_NA01 metagenome
Study Abstract
  
SRA Study Id SRP281652  (Link to NCBI )
Study Title Seawater microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR10_8 metagenome
Study Abstract
  
SRA Study Id SRP281651  (Link to NCBI )
Study Title Crustal fluids microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR09_17 metagenome
Study Abstract
  
SRA Study Id SRP281676  (Link to NCBI )
Study Title Crustal fluids microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR14_NA11 metagenome
Study Abstract
  
SRA Study Id SRP281654  (Link to NCBI )
Study Title Crustal fluids microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR09_18 metagenome
Study Abstract
  
SRA Study Id SRP281653  (Link to NCBI )
Study Title Crustal fluids microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR10_22 metagenome
Study Abstract
  
SRA Study Id SRP281656  (Link to NCBI )
Study Title Crustal fluids microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR11_3 metagenome
Study Abstract
  
SRA Study Id SRP281678  (Link to NCBI )
Study Title Sediment microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR13_sedM7 metagenome
Study Abstract
  
SRA Study Id SRP281677  (Link to NCBI )
Study Title Crustal fluids microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR14_NA05 metagenome
Study Abstract
  
SRA Study Id SRP281655  (Link to NCBI )
Study Title Crustal fluids microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR09_21 metagenome
Study Abstract
  
SRA Study Id SRP281658  (Link to NCBI )
Study Title Seawater microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR11_5 metagenome
Study Abstract
  
SRA Study Id SRP281679  (Link to NCBI )
Study Title Crustal fluids microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR14_NA24 metagenome
Study Abstract
  
SRA Study Id SRP281657  (Link to NCBI )
Study Title Crustal fluids microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR10_LV metagenome
Study Abstract
  
SRA Study Id SRP281638  (Link to NCBI )
Study Title Crustal fluids microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR08_20 metagenome
Study Abstract
  
SRA Study Id SRP281639  (Link to NCBI )
Study Title Seawater microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR08_37 metagenome
Study Abstract
  
SRA Study Id SRP281681  (Link to NCBI )
Study Title Crustal fluids microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR14_NA08 metagenome
Study Abstract
  
SRA Study Id SRP281661  (Link to NCBI )
Study Title Crustal fluids microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR13_1 metagenome
Study Abstract
  
SRA Study Id SRP281683  (Link to NCBI )
Study Title Crustal fluids microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR14_NA29 metagenome
Study Abstract
  
SRA Study Id SRP281660  (Link to NCBI )
Study Title Crustal fluids microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR11_13 metagenome
Study Abstract
  
SRA Study Id SRP281682  (Link to NCBI )
Study Title Sediment microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR13_sedM8 metagenome
Study Abstract
  
SRA Study Id SRP281663  (Link to NCBI )
Study Title Crustal fluids microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR11_11 metagenome
Study Abstract
  
SRA Study Id SRP281641  (Link to NCBI )
Study Title Crustal fluids microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR08_30 metagenome
Study Abstract
  
SRA Study Id SRP281662  (Link to NCBI )
Study Title Crustal fluids microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR11_16 metagenome
Study Abstract
  
SRA Study Id SRP281643  (Link to NCBI )
Study Title Crustal fluids microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR09_4 metagenome
Study Abstract
  
SRA Study Id SRP281664  (Link to NCBI )
Study Title Crustal fluids microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR11_2 metagenome
Study Abstract
  
SRA Study Id SRP281686  (Link to NCBI )
Study Title Crustal fluids microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR14_LV metagenome
Study Abstract
  
SRA Study Id SRP281642  (Link to NCBI )
Study Title Crustal fluids microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR08_23 metagenome
Study Abstract
  
SRA Study Id SRP281667  (Link to NCBI )
Study Title Seawater microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR13_34 metagenome
Study Abstract
  
SRA Study Id SRP281647  (Link to NCBI )
Study Title Crustal fluids microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR09_11 metagenome
Study Abstract
  
SRA Study Id SRP281669  (Link to NCBI )
Study Title Sediment microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR13_sedM1 metagenome
Study Abstract
  
SRA Study Id SRP281646  (Link to NCBI )
Study Title Crustal fluids microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR09_6 metagenome
Study Abstract
  
Legacy ER Study ID
Legacy GOLD ID
Added By JGI automated process on 2018-08-24
Last Modified By JGI automated process on 2019-09-06
PI Michael Rappe
Description The goal of the study is to determine the microbial community structure and investigate its variability in both space and time; to infer metabolic traits of the dominant community members from predicted gene identities; to assess genomic variability within abundant lineages in order to investigate potential functional differences in closely related phylotypes and natural population-level genomic variability; and to investigate the prevalence and genomic characteristics of viruses in this system.
Relevance
Study Information Link
Study Information Visibility Public
Metagenomic Study Yes
Publication
Is GEBA
Is HMP
ECOSYSTEM CLASSIFICATION
Ecosystem Environmental
Ecosystem Category Aquatic
Ecosystem Type Marine
Ecosystem Subtype Oceanic
Specific Ecosystem Unclassified
STUDY COMPOSITION
Number of Biosamples 42
Number of Organisms 0
Number of Seq Projects 42
Number of Analysis Projects 42
Number of Related Studies 0

 

 

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