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Study

Study Name: Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States

Projects

Biosamples

Organisms

Biosamples: 77 Seq. Projects: 77
STUDY INFORMATION
GOLD Study ID Gs0135754
Study Name Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States
Other Names
NCBI Umbrella Bioproject Name
NCBI Umbrella Bioproject ID
SRA Studies
SRA Study Id SRP191761  (Link to NCBI )
Study Title Sorghum-adapted microbial communities enriched on wild type (WT) sorghum from Joint BioEnergy Institute, Emeryville, California, United States - WT_Day14_8 metagenome
Study Abstract
  
SRA Study Id SRP191765  (Link to NCBI )
Study Title Sorghum-adapted microbial communities enriched on stacked mutant (SM) sorghum from Joint BioEnergy Institute, Emeryville, California, United States - SM_Day14_2 metagenome
Study Abstract
  
SRA Study Id SRP191766  (Link to NCBI )
Study Title Sorghum-adapted microbial communities enriched on wild type (WT) sorghum from Joint BioEnergy Institute, Emeryville, California, United States - WT_Day14_9 metagenome
Study Abstract
  
SRA Study Id SRP191764  (Link to NCBI )
Study Title Sorghum-adapted microbial communities enriched on stacked mutant (SM) sorghum from Joint BioEnergy Institute, Emeryville, California, United States - SM_Day14_1 metagenome
Study Abstract
  
SRA Study Id SRP191758  (Link to NCBI )
Study Title Sorghum-adapted microbial communities enriched on wild type (WT) sorghum from Joint BioEnergy Institute, Emeryville, California, United States - WT_Day14_5 metagenome
Study Abstract
  
SRA Study Id SRP221940  (Link to NCBI )
Study Title Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day7_7
Study Abstract
  
SRA Study Id SRP191756  (Link to NCBI )
Study Title Sorghum-adapted microbial communities enriched on wild type (WT) sorghum from Joint BioEnergy Institute, Emeryville, California, United States - WT_Day14_4 metagenome
Study Abstract
  
SRA Study Id SRP221942  (Link to NCBI )
Study Title Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day7_8
Study Abstract
  
SRA Study Id SRP191757  (Link to NCBI )
Study Title Sorghum-adapted microbial communities enriched on wild type (WT) sorghum from Joint BioEnergy Institute, Emeryville, California, United States - WT_Day14_6 metagenome
Study Abstract
  
SRA Study Id SRP243138  (Link to NCBI )
Study Title Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - P4_Day56_Rep3
Study Abstract
  
SRA Study Id SRP191775  (Link to NCBI )
Study Title Sorghum-adapted microbial communities enriched on stacked mutant (SM) sorghum from Joint BioEnergy Institute, Emeryville, California, United States - SM_Day14_5 metagenome
Study Abstract
  
SRA Study Id SRP221929  (Link to NCBI )
Study Title Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - WT_Day5_7
Study Abstract
  
SRA Study Id SRP239975  (Link to NCBI )
Study Title Sorghum-adapted microbial communities enriched on wild type (WT) sorghum from Joint BioEnergy Institute, Emeryville, California, United States - WT_Day14_1 metagenome
Study Abstract
  
SRA Study Id SRP221936  (Link to NCBI )
Study Title Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day7_1
Study Abstract
  
SRA Study Id SRP221938  (Link to NCBI )
Study Title Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day7_3
Study Abstract
  
SRA Study Id SRP221939  (Link to NCBI )
Study Title Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day7_2
Study Abstract
  
SRA Study Id SRP221932  (Link to NCBI )
Study Title Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - WT_Day7_8
Study Abstract
  
SRA Study Id SRP191769  (Link to NCBI )
Study Title Sorghum-adapted microbial communities enriched on stacked mutant (SM) sorghum from Joint BioEnergy Institute, Emeryville, California, United States - SM_Day14_4 metagenome
Study Abstract
  
SRA Study Id SRP221930  (Link to NCBI )
Study Title Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - WT_Day7_7
Study Abstract
  
SRA Study Id SRP243146  (Link to NCBI )
Study Title Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - P4_Day56_Rep1
Study Abstract
  
SRA Study Id SRP191767  (Link to NCBI )
Study Title Sorghum-adapted microbial communities enriched on wild type (WT) sorghum from Joint BioEnergy Institute, Emeryville, California, United States - WT_Day14_7 metagenome
Study Abstract
  
SRA Study Id SRP221931  (Link to NCBI )
Study Title Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - WT_Day7_9
Study Abstract
  
SRA Study Id SRP191768  (Link to NCBI )
Study Title Sorghum-adapted microbial communities enriched on stacked mutant (SM) sorghum from Joint BioEnergy Institute, Emeryville, California, United States - SM_Day14_3 metagenome
Study Abstract
  
SRA Study Id SRP243149  (Link to NCBI )
Study Title Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day14_2
Study Abstract
  
SRA Study Id SRP191783  (Link to NCBI )
Study Title Sorghum-adapted microbial communities enriched on stacked mutant (SM) sorghum from Joint BioEnergy Institute, Emeryville, California, United States - SM_Day14_9 metagenome
Study Abstract
  
SRA Study Id SRP191781  (Link to NCBI )
Study Title Sorghum-adapted microbial communities enriched on stacked mutant (SM) sorghum from Joint BioEnergy Institute, Emeryville, California, United States - SM_Day14_6 metagenome
Study Abstract
  
SRA Study Id SRP191782  (Link to NCBI )
Study Title Sorghum-adapted microbial communities enriched on stacked mutant (SM) sorghum from Joint BioEnergy Institute, Emeryville, California, United States - SM_Day14_8 metagenome
Study Abstract
  
SRA Study Id SRP243151  (Link to NCBI )
Study Title Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - WT_Day14_8
Study Abstract
  
SRA Study Id SRP243150  (Link to NCBI )
Study Title Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - WT_Day14_7
Study Abstract
  
SRA Study Id SRP243152  (Link to NCBI )
Study Title Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day14_1
Study Abstract
  
SRA Study Id SRP221918  (Link to NCBI )
Study Title Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day5_2
Study Abstract
  
SRA Study Id SRP221919  (Link to NCBI )
Study Title Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day5_3
Study Abstract
  
SRA Study Id SRP221969  (Link to NCBI )
Study Title Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day12_3
Study Abstract
  
SRA Study Id SRP221925  (Link to NCBI )
Study Title Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day5_8
Study Abstract
  
SRA Study Id SRP221926  (Link to NCBI )
Study Title Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day2_7
Study Abstract
  
SRA Study Id SRP221927  (Link to NCBI )
Study Title Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day5_9
Study Abstract
  
SRA Study Id SRP221928  (Link to NCBI )
Study Title Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day2_9
Study Abstract
  
SRA Study Id SRP221965  (Link to NCBI )
Study Title Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day12_7
Study Abstract
  
SRA Study Id SRP221921  (Link to NCBI )
Study Title Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day5_7
Study Abstract
  
SRA Study Id SRP221966  (Link to NCBI )
Study Title Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day12_2
Study Abstract
  
SRA Study Id SRP221922  (Link to NCBI )
Study Title Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - WT_Day5_8
Study Abstract
  
SRA Study Id SRP221967  (Link to NCBI )
Study Title Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day12_9
Study Abstract
  
SRA Study Id SRP221923  (Link to NCBI )
Study Title Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day2_8
Study Abstract
  
SRA Study Id SRP221968  (Link to NCBI )
Study Title Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day12_8
Study Abstract
  
SRA Study Id SRP221924  (Link to NCBI )
Study Title Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - WT_Day5_9
Study Abstract
  
SRA Study Id SRP221961  (Link to NCBI )
Study Title Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day9_1
Study Abstract
  
SRA Study Id SRP221962  (Link to NCBI )
Study Title Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - WT_Day12_8
Study Abstract
  
SRA Study Id SRP221963  (Link to NCBI )
Study Title Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day9_7
Study Abstract
  
SRA Study Id SRP243157  (Link to NCBI )
Study Title Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day14_8
Study Abstract
  
SRA Study Id SRP221920  (Link to NCBI )
Study Title Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day2_3
Study Abstract
  
SRA Study Id SRP191779  (Link to NCBI )
Study Title Sorghum-adapted microbial communities enriched on stacked mutant (SM) sorghum from Joint BioEnergy Institute, Emeryville, California, United States - SM_Day14_7 metagenome
Study Abstract
  
SRA Study Id SRP243159  (Link to NCBI )
Study Title Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - WT_Day14_9
Study Abstract
  
SRA Study Id SRP243158  (Link to NCBI )
Study Title Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day14_3
Study Abstract
  
SRA Study Id SRP221960  (Link to NCBI )
Study Title Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - WT_Day9_8
Study Abstract
  
SRA Study Id SRP191750  (Link to NCBI )
Study Title Sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States - P4_Day56_Rep2 metagenome
Study Abstract
  
SRA Study Id SRP191751  (Link to NCBI )
Study Title Sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States - P4_Day56_Rep3 metagenome
Study Abstract
  
SRA Study Id SRP243160  (Link to NCBI )
Study Title Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day14_7
Study Abstract
  
SRA Study Id SRP191754  (Link to NCBI )
Study Title Sorghum-adapted microbial communities enriched on wild type (WT) sorghum from Joint BioEnergy Institute, Emeryville, California, United States - WT_Day14_2 metagenome
Study Abstract
  
SRA Study Id SRP243161  (Link to NCBI )
Study Title Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day5_1
Study Abstract
  
SRA Study Id SRP191755  (Link to NCBI )
Study Title Sorghum-adapted microbial communities enriched on wild type (WT) sorghum from Joint BioEnergy Institute, Emeryville, California, United States - WT_Day14_3 metagenome
Study Abstract
  
SRA Study Id SRP221907  (Link to NCBI )
Study Title Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - WT_Day2_7
Study Abstract
  
SRA Study Id SRP221958  (Link to NCBI )
Study Title Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day9_3
Study Abstract
  
SRA Study Id SRP221959  (Link to NCBI )
Study Title Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - WT_Day9_9
Study Abstract
  
SRA Study Id SRP221915  (Link to NCBI )
Study Title Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day2_2
Study Abstract
  
SRA Study Id SRP221954  (Link to NCBI )
Study Title Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - WT_Day12_9
Study Abstract
  
SRA Study Id SRP221911  (Link to NCBI )
Study Title Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - WT_Day2_8
Study Abstract
  
SRA Study Id SRP221955  (Link to NCBI )
Study Title Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day7_9
Study Abstract
  
SRA Study Id SRP221912  (Link to NCBI )
Study Title Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - WT_Day2_9
Study Abstract
  
SRA Study Id SRP221956  (Link to NCBI )
Study Title Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - WT_Day9_7
Study Abstract
  
SRA Study Id SRP221957  (Link to NCBI )
Study Title Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - WT_Day12_7
Study Abstract
  
SRA Study Id SRP221913  (Link to NCBI )
Study Title Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day2_1
Study Abstract
  
SRA Study Id SRP243166  (Link to NCBI )
Study Title Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day14_9
Study Abstract
  
SRA Study Id SRP191747  (Link to NCBI )
Study Title Sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States - P4_Day56_Rep1 metagenome
Study Abstract
  
SRA Study Id SRP221951  (Link to NCBI )
Study Title Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day9_8
Study Abstract
  
SRA Study Id SRP221952  (Link to NCBI )
Study Title Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day9_2
Study Abstract
  
SRA Study Id SRP221953  (Link to NCBI )
Study Title Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day9_9
Study Abstract
  
Legacy ER Study ID
Legacy GOLD ID
Added By JGI automated process on 2018-08-24
Last Modified By JGI automated process on 2019-09-06
PI Steven W. Singer
Description The goal of the study is to determine the effect of brown midrib (bmr) mutations on the deconstruction and enzymatic conversion of the sorghum biomass.
Relevance
Study Information Link
Study Information Visibility Public
Metagenomic Study Yes
Publication
Is GEBA
Is HMP
ECOSYSTEM CLASSIFICATION
Ecosystem Host-associated
Ecosystem Category Plants
Ecosystem Type Phyllosphere
Ecosystem Subtype Unclassified
Specific Ecosystem Unclassified
STUDY COMPOSITION
Number of Biosamples 77
Number of Organisms 0
Number of Seq Projects 77
Number of Analysis Projects 275
Number of Related Studies 0

 

 

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