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Study

Study Name: Genomic analyses of the natural microbiome of Caenorhabditis elegans

Projects

Biosamples

Organisms

Biosamples: 0 Seq. Projects: 58
STUDY INFORMATION
GOLD Study ID Gs0135012
Study Name Genomic analyses of the natural microbiome of Caenorhabditis elegans
Other Names
NCBI Umbrella Bioproject Name
NCBI Umbrella Bioproject ID
SRA Studies
SRA Study Id SRP179840
Study Title Buttiauxella sp. JUb87 Genome sequencing
Study Abstract
  
SRA Study Id SRP179863
Study Title Curtobacterium flaccumfaciens JUb65 genome sequencing
Study Abstract
  
SRA Study Id SRP179841
Study Title Raoultella terrigena BIGb0188 genome sequencing
Study Abstract
  
SRA Study Id SRP179860
Study Title Comamonas sp. BIGb0124 Genome sequencing
Study Abstract
  
SRA Study Id SRP179861
Study Title Comamonas sp. JUb58 Genome sequencing
Study Abstract
  
SRA Study Id SRP179866
Study Title Arthrobacter sp. JUb115 Genome sequencing
Study Abstract
  
SRA Study Id SRP179844
Study Title Raoultella sp. BIGb0149 Genome sequencing
Study Abstract
  
SRA Study Id SRP181266
Study Title Raoultella ornithinolytica JUb54 genome sequencing
Study Abstract
  
SRA Study Id SRP179867
Study Title Sphingobacterium sp. JUb20 Genome sequencing
Study Abstract
  
SRA Study Id SRP179842
Study Title Raoultella sp. BIGb0138 Genome sequencing
Study Abstract
  
SRA Study Id SRP179864
Study Title Leucobacter luti JUb18 genome sequencing
Study Abstract
  
SRA Study Id SRP179865
Study Title Curtobacterium sp. JUb34 Genome sequencing
Study Abstract
  
SRA Study Id SRP179843
Study Title Raoultella terrigena BIGb0267 genome sequencing
Study Abstract
  
SRA Study Id SRP179821
Study Title Stenotrophomonas rhizophila BIGb0145 genome sequencing
Study Abstract
  
SRA Study Id SRP179826
Study Title Pseudomonas protegens BIGb0404 genome sequencing
Study Abstract
  
SRA Study Id SRP179849
Study Title Lelliottia amnigena JUb66 genome sequencing
Study Abstract
  
SRA Study Id SRP179827
Study Title Pseudomonas helmanticensis BIGb0525 genome sequencing
Study Abstract
  
SRA Study Id SRP179868
Study Title Ochrobactrum sp. BH3 Genome sequencing
Study Abstract
  
SRA Study Id SRP181263
Study Title Providencia alcalifaciens JUb39 genome sequencing
Study Abstract
  
SRA Study Id SRP179846
Study Title Providencia alcalifaciens JUb102 genome sequencing
Study Abstract
  
SRA Study Id SRP179825
Study Title Buttiauxella sp. BIGb0552 Genome sequencing
Study Abstract
  
SRA Study Id SRP181260
Study Title Sphingomonas sp. JUb134 Genome sequencing
Study Abstract
  
SRA Study Id SRP179829
Study Title Raoultella sp. BIGb0399 Genome sequencing
Study Abstract
  
SRA Study Id SRP179870
Study Title Chryseobacterium nakagawai BIGb0215 genome sequencing
Study Abstract
  
SRA Study Id SRP179851
Study Title Enterobacter sp. BIGb0383 Genome sequencing
Study Abstract
  
SRA Study Id SRP213188
Study Title Pseudomonas flavescens BIGb0408 genome sequencing
Study Abstract
  
SRA Study Id SRP179830
Study Title Pseudomonas protegens JUb28 genome sequencing
Study Abstract
  
SRA Study Id SRP213187
Study Title Sphingobacterium sp. JUb56 Genome sequencing
Study Abstract
  
SRA Study Id SRP179871
Study Title Sphingobacterium sp. JUb78 Genome sequencing
Study Abstract
  
SRA Study Id SRP179850
Study Title Enterobacter sp. BIGb0359 Genome sequencing
Study Abstract
  
SRA Study Id SRP213185
Study Title Acinetobacter sp. BIGb0196 Genome sequencing
Study Abstract
  
SRA Study Id SRP179833
Study Title Rahnella sp. JUb53 Genome sequencing
Study Abstract
  
SRA Study Id SRP179855
Study Title Serratia sp. BIGb0156 Genome sequencing
Study Abstract
  
SRA Study Id SRP179856
Study Title Rahnella sp. BIGb0236 Genome sequencing
Study Abstract
  
SRA Study Id SRP179834
Study Title Pseudomonas brenneri BIGb0273 genome sequencing
Study Abstract
  
SRA Study Id SRP179831
Study Title Acinetobacter calcoaceticus JUb89 genome sequencing
Study Abstract
  
SRA Study Id SRP179832
Study Title Pseudomonas sp. JUb52 Genome sequencing
Study Abstract
  
SRA Study Id SRP179854
Study Title Leucobacter luti BIGb0106 genome sequencing
Study Abstract
  
SRA Study Id SRP179815
Study Title Pseudomonas psychrophila BIGb0477 genome sequencing
Study Abstract
  
SRA Study Id SRP179859
Study Title Delftia acidovorans JUb8 genome sequencing
Study Abstract
  
SRA Study Id SRP179816
Study Title Stenotrophomonas maltophilia BIGb0219 genome sequencing
Study Abstract
  
SRA Study Id SRP179835
Study Title Acinetobacter sp. BIGb0102 Genome sequencing
Study Abstract
  
SRA Study Id SRP181275
Study Title Erwinia sp. JUb26 Genome sequencing
Study Abstract
  
SRA Study Id SRP179858
Study Title Neorhizobium sp. JUb45 Genome sequencing
Study Abstract
  
SRA Study Id SRP179817
Study Title Pseudomonas putida BIGb0473 genome sequencing
Study Abstract
  
SRA Study Id SRP179839
Study Title Erwinia rhapontici BIGb0435 genome sequencing
Study Abstract
  
SRA Study Id SRP179818
Study Title Pseudomonas putida JUb85 genome sequencing
Study Abstract
  
Legacy ER Study ID
Legacy GOLD ID
Added By JGI automated process on 2018-06-01
Last Modified By JGI automated process on 2019-09-06
PI Buck Samuel
Description Genome sequences for 59 bacterial strains of the natural microbiome of Caenorhabditis elegans. These strains are selected based on their phylogenetic relatedness to the core microbiota of C. elegans, many of which robustly colonize the its gut and have demonstrated impact on host fitness and fruit decomposition. Collectively, they represent 26 genera and are isolated from C. elegans colonizing a wide range of natural habitats, from rotten fruit to plant stems to invertebrate vectors.
Relevance
Study Information Link
Study Information Visibility Public
Metagenomic Study No
Publication
Is GEBA
Is HMP
ECOSYSTEM CLASSIFICATION
Ecosystem
Ecosystem Category
Ecosystem Type
Ecosystem Subtype
Specific Ecosystem
STUDY COMPOSITION
Number of Biosamples 0
Number of Organisms 58
Number of Seq Projects 58
Number of Analysis Projects 58
Number of Related Studies 0

 

 

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