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Study

Study Name: Genomic analyses of the natural microbiome of Caenorhabditis elegans

Projects

Biosamples

Organisms

Biosamples: 0 Seq. Projects: 106
STUDY INFORMATION
GOLD Study ID Gs0135012
Study Name Genomic analyses of the natural microbiome of Caenorhabditis elegans
Other Names
NCBI Umbrella Bioproject Name
NCBI Umbrella Bioproject ID
SRA Studies
SRA Study Id SRP179840  (Link to NCBI )
Study Title Buttiauxella sp. JUb87 Genome sequencing
Study Abstract
  
SRA Study Id SRP179863  (Link to NCBI )
Study Title Curtobacterium flaccumfaciens JUb65 genome sequencing
Study Abstract
  
SRA Study Id SRP179841  (Link to NCBI )
Study Title Raoultella terrigena BIGb0188 genome sequencing
Study Abstract
  
SRA Study Id SRP179860  (Link to NCBI )
Study Title Comamonas sp. BIGb0124 Genome sequencing
Study Abstract
  
SRA Study Id SRP179861  (Link to NCBI )
Study Title Comamonas sp. JUb58 Genome sequencing
Study Abstract
  
SRA Study Id SRP179866  (Link to NCBI )
Study Title Arthrobacter sp. JUb115 Genome sequencing
Study Abstract
  
SRA Study Id SRP179844  (Link to NCBI )
Study Title Raoultella sp. BIGb0149 Genome sequencing
Study Abstract
  
SRA Study Id SRP181266  (Link to NCBI )
Study Title Raoultella ornithinolytica JUb54 genome sequencing
Study Abstract
  
SRA Study Id SRP179867  (Link to NCBI )
Study Title Sphingobacterium sp. JUb20 Genome sequencing
Study Abstract
  
SRA Study Id SRP179842  (Link to NCBI )
Study Title Raoultella sp. BIGb0138 Genome sequencing
Study Abstract
  
SRA Study Id SRP179864  (Link to NCBI )
Study Title Leucobacter luti JUb18 genome sequencing
Study Abstract
  
SRA Study Id SRP179865  (Link to NCBI )
Study Title Curtobacterium sp. JUb34 Genome sequencing
Study Abstract
  
SRA Study Id SRP179843  (Link to NCBI )
Study Title Raoultella terrigena BIGb0267 genome sequencing
Study Abstract
  
SRA Study Id SRP179821  (Link to NCBI )
Study Title Stenotrophomonas rhizophila BIGb0145 genome sequencing
Study Abstract
  
SRA Study Id SRP179826  (Link to NCBI )
Study Title Pseudomonas protegens BIGb0404 genome sequencing
Study Abstract
  
SRA Study Id SRP179849  (Link to NCBI )
Study Title Lelliottia amnigena JUb66 genome sequencing
Study Abstract
  
SRA Study Id SRP179827  (Link to NCBI )
Study Title Pseudomonas helmanticensis BIGb0525 genome sequencing
Study Abstract
  
SRA Study Id SRP179868  (Link to NCBI )
Study Title Ochrobactrum sp. BH3 Genome sequencing
Study Abstract
  
SRA Study Id SRP181263  (Link to NCBI )
Study Title Providencia alcalifaciens JUb39 genome sequencing
Study Abstract
  
SRA Study Id SRP179846  (Link to NCBI )
Study Title Providencia alcalifaciens JUb102 genome sequencing
Study Abstract
  
SRA Study Id SRP179825  (Link to NCBI )
Study Title Buttiauxella sp. BIGb0552 Genome sequencing
Study Abstract
  
SRA Study Id SRP181260  (Link to NCBI )
Study Title Sphingomonas sp. JUb134 Genome sequencing
Study Abstract
  
SRA Study Id SRP179829  (Link to NCBI )
Study Title Raoultella sp. BIGb0399 Genome sequencing
Study Abstract
  
SRA Study Id SRP179870  (Link to NCBI )
Study Title Chryseobacterium nakagawai BIGb0215 genome sequencing
Study Abstract
  
SRA Study Id SRP179851  (Link to NCBI )
Study Title Enterobacter sp. BIGb0383 Genome sequencing
Study Abstract
  
SRA Study Id SRP213188  (Link to NCBI )
Study Title Pseudomonas flavescens BIGb0408 genome sequencing
Study Abstract
  
SRA Study Id SRP179830  (Link to NCBI )
Study Title Pseudomonas protegens JUb28 genome sequencing
Study Abstract
  
SRA Study Id SRP213187  (Link to NCBI )
Study Title Sphingobacterium sp. JUb56 Genome sequencing
Study Abstract
  
SRA Study Id SRP179871  (Link to NCBI )
Study Title Sphingobacterium sp. JUb78 Genome sequencing
Study Abstract
  
SRA Study Id SRP179850  (Link to NCBI )
Study Title Enterobacter sp. BIGb0359 Genome sequencing
Study Abstract
  
SRA Study Id SRP255041  (Link to NCBI )
Study Title Chryseobacterium sp. JUb44 Genome sequencing
Study Abstract
  
SRA Study Id SRP213185  (Link to NCBI )
Study Title Acinetobacter sp. BIGb0196 Genome sequencing
Study Abstract
  
SRA Study Id SRP179833  (Link to NCBI )
Study Title Rahnella sp. JUb53 Genome sequencing
Study Abstract
  
SRA Study Id SRP179855  (Link to NCBI )
Study Title Serratia sp. BIGb0156 Genome sequencing
Study Abstract
  
SRA Study Id SRP179856  (Link to NCBI )
Study Title Rahnella sp. BIGb0236 Genome sequencing
Study Abstract
  
SRA Study Id SRP179834  (Link to NCBI )
Study Title Pseudomonas brenneri BIGb0273 genome sequencing
Study Abstract
  
SRA Study Id SRP179831  (Link to NCBI )
Study Title Acinetobacter calcoaceticus JUb89 genome sequencing
Study Abstract
  
SRA Study Id SRP179832  (Link to NCBI )
Study Title Pseudomonas sp. JUb52 Genome sequencing
Study Abstract
  
SRA Study Id SRP179854  (Link to NCBI )
Study Title Leucobacter luti BIGb0106 genome sequencing
Study Abstract
  
SRA Study Id SRP179815  (Link to NCBI )
Study Title Pseudomonas psychrophila BIGb0477 genome sequencing
Study Abstract
  
SRA Study Id SRP179859  (Link to NCBI )
Study Title Delftia acidovorans JUb8 genome sequencing
Study Abstract
  
SRA Study Id SRP179816  (Link to NCBI )
Study Title Stenotrophomonas maltophilia BIGb0219 genome sequencing
Study Abstract
  
SRA Study Id SRP179835  (Link to NCBI )
Study Title Acinetobacter sp. BIGb0102 Genome sequencing
Study Abstract
  
SRA Study Id SRP181275  (Link to NCBI )
Study Title Erwinia sp. JUb26 Genome sequencing
Study Abstract
  
SRA Study Id SRP179858  (Link to NCBI )
Study Title Neorhizobium sp. JUb45 Genome sequencing
Study Abstract
  
SRA Study Id SRP179817  (Link to NCBI )
Study Title Pseudomonas putida BIGb0473 genome sequencing
Study Abstract
  
SRA Study Id SRP179839  (Link to NCBI )
Study Title Erwinia rhapontici BIGb0435 genome sequencing
Study Abstract
  
SRA Study Id SRP179818  (Link to NCBI )
Study Title Pseudomonas putida JUb85 genome sequencing
Study Abstract
  
Legacy ER Study ID
Legacy GOLD ID
Added By JGI automated process on 2018-06-01
Last Modified By JGI automated process on 2019-09-06
PI Buck Samuel
Description Genome sequences for 59 bacterial strains of the natural microbiome of Caenorhabditis elegans. These strains are selected based on their phylogenetic relatedness to the core microbiota of C. elegans, many of which robustly colonize the its gut and have demonstrated impact on host fitness and fruit decomposition. Collectively, they represent 26 genera and are isolated from C. elegans colonizing a wide range of natural habitats, from rotten fruit to plant stems to invertebrate vectors.
Relevance
Study Information Link
Study Information Visibility Public
Metagenomic Study No
Publication
Is GEBA
Is HMP
ECOSYSTEM CLASSIFICATION
Ecosystem
Ecosystem Category
Ecosystem Type
Ecosystem Subtype
Specific Ecosystem
STUDY COMPOSITION
Number of Biosamples 0
Number of Organisms 106
Number of Seq Projects 106
Number of Analysis Projects 111
Number of Related Studies 0

 

 

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