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Study

Study Name: Plant litter microbial communities from East Loma Ridge, Irvine, California

Projects

Biosamples

Organisms

Biosamples: 111 Seq. Projects: 111
STUDY INFORMATION
GOLD Study ID Gs0134331
Study Name Plant litter microbial communities from East Loma Ridge, Irvine, California
Other Names
NCBI Umbrella Bioproject Name
NCBI Umbrella Bioproject ID
SRA Studies
SRA Study Id SRP195404
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T6
Study Abstract
  
SRA Study Id SRP195405
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T5
Study Abstract
  
SRA Study Id SRP195406
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T6
Study Abstract
  
SRA Study Id SRP195400
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T4
Study Abstract
  
SRA Study Id SRP195402
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T5
Study Abstract
  
SRA Study Id SRP195403
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T6
Study Abstract
  
SRA Study Id SRP184629
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T5
Study Abstract
  
SRA Study Id SRP184628
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T3
Study Abstract
  
SRA Study Id SRP184636
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T8
Study Abstract
  
SRA Study Id SRP184635
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T7
Study Abstract
  
SRA Study Id SRP184638
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T9
Study Abstract
  
SRA Study Id SRP184637
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T8
Study Abstract
  
SRA Study Id SRP184632
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T1
Study Abstract
  
SRA Study Id SRP184631
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T2
Study Abstract
  
SRA Study Id SRP184633
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T7
Study Abstract
  
SRA Study Id SRP184630
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T0
Study Abstract
  
SRA Study Id SRP195415
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T10
Study Abstract
  
SRA Study Id SRP195416
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T12
Study Abstract
  
SRA Study Id SRP195417
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T12
Study Abstract
  
SRA Study Id SRP195411
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T10
Study Abstract
  
SRA Study Id SRP195412
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T11
Study Abstract
  
SRA Study Id SRP195413
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T11
Study Abstract
  
SRA Study Id SRP195410
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T10
Study Abstract
  
SRA Study Id SRP184647
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T14
Study Abstract
  
SRA Study Id SRP184646
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T13
Study Abstract
  
SRA Study Id SRP184648
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T15
Study Abstract
  
SRA Study Id SRP184643
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T12
Study Abstract
  
SRA Study Id SRP184645
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T9
Study Abstract
  
SRA Study Id SRP184644
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T13
Study Abstract
  
SRA Study Id SRP195408
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T7
Study Abstract
  
SRA Study Id SRP195409
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T8
Study Abstract
  
SRA Study Id SRP195427
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T17
Study Abstract
  
SRA Study Id SRP195429
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T19
Study Abstract
  
SRA Study Id SRP195389
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T2
Study Abstract
  
SRA Study Id SRP195423
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T14
Study Abstract
  
SRA Study Id SRP195424
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T16
Study Abstract
  
SRA Study Id SRP195425
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T17
Study Abstract
  
SRA Study Id SRP195385
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T1
Study Abstract
  
SRA Study Id SRP195386
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T0
Study Abstract
  
SRA Study Id SRP195420
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T14
Study Abstract
  
SRA Study Id SRP195388
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T1
Study Abstract
  
SRA Study Id SRP195421
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T15
Study Abstract
  
SRA Study Id SRP180851
Study Title Plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T30 metagenome
Study Abstract
  
SRA Study Id SRP184657
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T15
Study Abstract
  
SRA Study Id SRP180853
Study Title Plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T30 metagenome
Study Abstract
  
SRA Study Id SRP184659
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T16
Study Abstract
  
SRA Study Id SRP195419
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T13
Study Abstract
  
SRA Study Id SRP195437
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T26
Study Abstract
  
SRA Study Id SRP195439
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T23
Study Abstract
  
SRA Study Id SRP195433
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T22
Study Abstract
  
SRA Study Id SRP195434
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T22
Study Abstract
  
SRA Study Id SRP195435
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T23
Study Abstract
  
SRA Study Id SRP195436
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T24
Study Abstract
  
SRA Study Id SRP195396
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T3
Study Abstract
  
SRA Study Id SRP195430
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T18
Study Abstract
  
SRA Study Id SRP195431
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T22
Study Abstract
  
SRA Study Id SRP195432
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T18
Study Abstract
  
SRA Study Id SRP180855
Study Title Plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T30 metagenome
Study Abstract
  
SRA Study Id SRP195393
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T4
Study Abstract
  
SRA Study Id SRP195394
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T3
Study Abstract
  
SRA Study Id SRP195395
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T4
Study Abstract
  
SRA Study Id SRP184702
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T32
Study Abstract
  
SRA Study Id SRP195390
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T2
Study Abstract
  
SRA Study Id SRP184703
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T30
Study Abstract
  
SRA Study Id SRP184665
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T19
Study Abstract
  
SRA Study Id SRP184664
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T19
Study Abstract
  
SRA Study Id SRP184666
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T20
Study Abstract
  
SRA Study Id SRP184661
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T17
Study Abstract
  
SRA Study Id SRP184660
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T16
Study Abstract
  
SRA Study Id SRP184663
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T18
Study Abstract
  
SRA Study Id SRP195449
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T29
Study Abstract
  
SRA Study Id SRP195445
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T28
Study Abstract
  
SRA Study Id SRP195446
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T27
Study Abstract
  
SRA Study Id SRP195447
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T29
Study Abstract
  
SRA Study Id SRP195440
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T25
Study Abstract
  
SRA Study Id SRP184709
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T34
Study Abstract
  
SRA Study Id SRP195441
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T24
Study Abstract
  
SRA Study Id SRP195443
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T27
Study Abstract
  
SRA Study Id SRP184708
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T33
Study Abstract
  
SRA Study Id SRP184707
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T34
Study Abstract
  
SRA Study Id SRP184679
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T21
Study Abstract
  
SRA Study Id SRP184714
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T35
Study Abstract
  
SRA Study Id SRP184676
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T21
Study Abstract
  
SRA Study Id SRP184675
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T21
Study Abstract
  
SRA Study Id SRP184674
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T20
Study Abstract
  
SRA Study Id SRP184673
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T20
Study Abstract
  
SRA Study Id SRP195459
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T33
Study Abstract
  
SRA Study Id SRP195456
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T32
Study Abstract
  
SRA Study Id SRP195457
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T32
Study Abstract
  
SRA Study Id SRP195458
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T33
Study Abstract
  
SRA Study Id SRP195451
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T28
Study Abstract
  
SRA Study Id SRP195452
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T31
Study Abstract
  
SRA Study Id SRP195453
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T31
Study Abstract
  
SRA Study Id SRP184718
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T35
Study Abstract
  
SRA Study Id SRP184687
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T25
Study Abstract
  
SRA Study Id SRP184689
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T26
Study Abstract
  
SRA Study Id SRP184688
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T25
Study Abstract
  
SRA Study Id SRP184681
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T24
Study Abstract
  
SRA Study Id SRP184680
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T23
Study Abstract
  
SRA Study Id SRP195462
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T35
Study Abstract
  
SRA Study Id SRP195464
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T0
Study Abstract
  
SRA Study Id SRP195461
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T34
Study Abstract
  
SRA Study Id SRP184698
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T30
Study Abstract
  
SRA Study Id SRP184699
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T30
Study Abstract
  
SRA Study Id SRP184694
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T28
Study Abstract
  
SRA Study Id SRP184690
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T26
Study Abstract
  
SRA Study Id SRP183240
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T11
Study Abstract
  
SRA Study Id SRP184692
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T29
Study Abstract
  
SRA Study Id SRP184691
Study Title Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T27
Study Abstract
  
Legacy ER Study ID
Legacy GOLD ID
Added By JGI automated process on 2018-04-13
Last Modified By JGI automated process on 2019-09-06
PI Jennifer Martiny
Description The goal of this study is to test the main hypothesis that the top layer of soil (leaf litter in a Southern California grassland ecosystem) may display diel cycling in community activity; to identify specific pathways that are subject to these daily fluctuations; and to analyze in further detail the transcripts involved in both carbon and nitrogen cycling. To profile the transcriptome over the course of three days, leaf litter was collected in triplicates every two hours.
Relevance
Study Information Link
Study Information Visibility Public
Metagenomic Study Yes
Publication
Is GEBA
Is HMP
ECOSYSTEM CLASSIFICATION
Ecosystem Environmental
Ecosystem Category Terrestrial
Ecosystem Type Plant litter
Ecosystem Subtype Unclassified
Specific Ecosystem Unclassified
STUDY COMPOSITION
Number of Biosamples 111
Number of Organisms 0
Number of Seq Projects 111
Number of Analysis Projects 219
Number of Related Studies 0

 

 

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