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Study

Study Name: Rumen microbial communities from sheep, dairy cows and beef cattle from various locations

Projects

Biosamples

Organisms

Biosamples: 24 Seq. Projects: 28
STUDY INFORMATION
GOLD Study ID Gs0133408
Study Name Rumen microbial communities from sheep, dairy cows and beef cattle from various locations
Other Names
NCBI Umbrella Bioproject Name
NCBI Umbrella Bioproject ID
SRA Studies
SRA Study Id SRP163890
Study Title Metatranscriptome of bovine rumen microbial communities from Lethbridge, Alberta, Canada - Rumen RJG_06
Study Abstract
  
SRA Study Id SRP194762
Study Title Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1742 DNA GHGhigh gp2 metagenome
Study Abstract
  
SRA Study Id SRP194753
Study Title Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1766 DNA GHGlow gp2 metagenome
Study Abstract
  
SRA Study Id SRP194765
Study Title Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1728 DNA GHGlow gp2 metagenome
Study Abstract
  
SRA Study Id SRP163888
Study Title Metatranscriptome of bovine rumen microbial communities from Lethbridge, Alberta, Canada - Rumen RJG_05
Study Abstract
  
SRA Study Id SRP163887
Study Title Bovine rumen microbial communities from Lethbridge, Alberta, Canada - RJG_03 metagenome
Study Abstract
  
SRA Study Id SRP163889
Study Title Bovine rumen microbial communities from Lethbridge, Alberta, Canada - RJG_01 metagenome
Study Abstract
  
SRA Study Id SRP157854
Study Title Metatranscriptome of bovine rumen microbial communities from Lethbridge, Alberta, Canada - Rumen RJG_07
Study Abstract
  
SRA Study Id SRP155985
Study Title Metatranscriptome of sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1766 RNA GHGlow gp2
Study Abstract
  
SRA Study Id SRP179453
Study Title Bovine rumen microbial communities from Lethbridge, Alberta, Canada - RJG_02 metagenome
Study Abstract
  
SRA Study Id SRP184301
Study Title Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_01 metagenome
Study Abstract
  
SRA Study Id SRP155993
Study Title Metatranscriptome of sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1728 RNA GHGlow gp2
Study Abstract
  
SRA Study Id SRP178645
Study Title Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1770 DNA GHGhigh gp2 metagenome
Study Abstract
  
SRA Study Id SRP155998
Study Title Metatranscriptome of sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1770 RNA GHGhigh gp2
Study Abstract
  
SRA Study Id SRP155999
Study Title Metatranscriptome of sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1742 RNA GHGhigh gp2
Study Abstract
  
Legacy ER Study ID
Legacy GOLD ID
Added By JGI automated process on 2018-01-05
Last Modified By Galina Ovchinnikova on 2018-02-08
PI Graeme Attwood
Description The rumen microbiome mediates the conversion of plant lignocellulosic materials into ruminant products such as meat, milk and fibre. These conversions are also part of larger global carbon cycling processes, and understanding how they occur in the rumen will contribute to the goals of generating alternative fuels from lignocellulosic substrates and to reducing methane emissions from ruminant animals. Identifying the types of microbial genes that encode these processes and understanding how they are expressed are the aims of this study.
Relevance
Study Information Link
Study Information Visibility Public
Metagenomic Study Yes
Publication
Is GEBA
Is HMP
ECOSYSTEM CLASSIFICATION
Ecosystem Host-associated
Ecosystem Category Mammals
Ecosystem Type Digestive system
Ecosystem Subtype Foregut
Specific Ecosystem Rumen
STUDY COMPOSITION
Number of Biosamples 24
Number of Organisms 0
Number of Seq Projects 28
Number of Analysis Projects 53
Number of Related Studies 0

 

 

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