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Study

Study Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States

Projects

Biosamples

Organisms

Biosamples: 322 Seq. Projects: 322
STUDY INFORMATION
GOLD Study ID Gs0131212
Study Name Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States
Other Names
NCBI Umbrella Bioproject Name
NCBI Umbrella Bioproject ID
SRA Studies
SRA Study Id SRP144511  (Link to NCBI )
Study Title Metatranscriptome of freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17 MT
Study Abstract
  
SRA Study Id SRP144489  (Link to NCBI )
Study Title Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG metagenome
Study Abstract
  
SRA Study Id SRP144510  (Link to NCBI )
Study Title Metatranscriptome of freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 3-17 MT
Study Abstract
  
SRA Study Id SRP144502  (Link to NCBI )
Study Title Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MG metagenome
Study Abstract
  
SRA Study Id SRP144479  (Link to NCBI )
Study Title Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 1-17 MG metagenome
Study Abstract
  
SRA Study Id SRP144512  (Link to NCBI )
Study Title Metatranscriptome of freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MT
Study Abstract
  
SRA Study Id SRP144484  (Link to NCBI )
Study Title Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 3-17 MG metagenome
Study Abstract
  
SRA Study Id SRP155590  (Link to NCBI )
Study Title Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17_Aug_MG metagenome
Study Abstract
  
SRA Study Id SRP155592  (Link to NCBI )
Study Title Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17_Aug_MG metagenome
Study Abstract
  
SRA Study Id SRP144504  (Link to NCBI )
Study Title Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17 MG metagenome
Study Abstract
  
SRA Study Id SRP144506  (Link to NCBI )
Study Title Metatranscriptome of freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 1-17 MT
Study Abstract
  
SRA Study Id SRP155566  (Link to NCBI )
Study Title Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 1-17_Aug_MG metagenome
Study Abstract
  
SRA Study Id SRP155610  (Link to NCBI )
Study Title Metatranscriptome of freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 2-17_Aug_MT
Study Abstract
  
SRA Study Id SRP155611  (Link to NCBI )
Study Title Metatranscriptome of freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17_Aug_MT
Study Abstract
  
SRA Study Id SRP155578  (Link to NCBI )
Study Title Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 3-17_Aug_MG metagenome
Study Abstract
  
SRA Study Id SRP155612  (Link to NCBI )
Study Title Metatranscriptome of freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 3-17_Aug_MT
Study Abstract
  
SRA Study Id SRP153797  (Link to NCBI )
Study Title Metatranscriptome of freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MT
Study Abstract
  
SRA Study Id SRP155575  (Link to NCBI )
Study Title Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 2-17_Aug_MG metagenome
Study Abstract
  
SRA Study Id SRP155586  (Link to NCBI )
Study Title Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17_Aug_MG metagenome
Study Abstract
  
SRA Study Id SRP153794  (Link to NCBI )
Study Title Metatranscriptome of freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 2-17 MT
Study Abstract
  
SRA Study Id SRP144481  (Link to NCBI )
Study Title Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 2-17 MG metagenome
Study Abstract
  
SRA Study Id SRP155613  (Link to NCBI )
Study Title Metatranscriptome of freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17_Aug_MT
Study Abstract
  
SRA Study Id SRP155615  (Link to NCBI )
Study Title Metatranscriptome of freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17_Aug_MT
Study Abstract
  
SRA Study Id SRP155605  (Link to NCBI )
Study Title Metatranscriptome of freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 1-17_Aug_MT
Study Abstract
  
Legacy ER Study ID
Legacy GOLD ID
Added By JGI automated process on 2017-09-15
Last Modified By JGI automated process on 2019-09-06
PI Elizabeth A. Ottesen
Description Pelagic stream microbial communities exhibit a striking succession gradient, with taxonomic diversity declining sharply with increasing distance traveled within a stream network. This decrease in total diversity is associated with a decrease in the fraction of bacterial taxa typically found in surrounding environments, such as soil and sediment, and a rise in the fraction of taxa commonly present in the water column of freshwater lakes. Together, this data suggests that the stream environment selects for bacteria specifically adapted for a pelagic freshwater lifestyle. The goal of this study is to identify the genetic drivers of this selection and its impact on community metabolic networks and ecosystem function.
Relevance
Study Information Link
Study Information Visibility Public
Metagenomic Study Yes
Publication
Is GEBA
Is HMP
ECOSYSTEM CLASSIFICATION
Ecosystem Environmental
Ecosystem Category Aquatic
Ecosystem Type Freshwater
Ecosystem Subtype Creek
Specific Ecosystem Unclassified
STUDY COMPOSITION
Number of Biosamples 322
Number of Organisms 0
Number of Seq Projects 322
Number of Analysis Projects 330
Number of Related Studies 0

 

 

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