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Study

Study Name: Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico

Projects

Biosamples

Organisms

Biosamples: 106 Seq. Projects: 106
STUDY INFORMATION
GOLD Study ID Gs0128850
Study Name Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico
Other Names
NCBI Umbrella Bioproject Name
NCBI Umbrella Bioproject Accession
SRA Studies
SRA Study Id SRP197548  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17 metagenome
Study Abstract
  
SRA Study Id SRP197663  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21 metagenome
Study Abstract
  
SRA Study Id SRP197541  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19 metagenome
Study Abstract
  
SRA Study Id SRP197665  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22 metagenome
Study Abstract
  
SRA Study Id SRP197664  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29 metagenome
Study Abstract
  
SRA Study Id SRP197543  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18 metagenome
Study Abstract
  
SRA Study Id SRP197661  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20 metagenome
Study Abstract
  
SRA Study Id SRP197540  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21 metagenome
Study Abstract
  
SRA Study Id SRP197660  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20 metagenome
Study Abstract
  
SRA Study Id SRP131549  (Link to NCBI )
Study Title Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H metagenome
Study Abstract
  
SRA Study Id SRP131547  (Link to NCBI )
Study Title Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 metagenome
Study Abstract
  
SRA Study Id SRP131548  (Link to NCBI )
Study Title Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 metagenome
Study Abstract
  
SRA Study Id SRP197678  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24 metagenome
Study Abstract
  
SRA Study Id SRP197556  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20 metagenome
Study Abstract
  
SRA Study Id SRP197677  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23 metagenome
Study Abstract
  
SRA Study Id SRP197679  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25 metagenome
Study Abstract
  
SRA Study Id SRP197674  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22 metagenome
Study Abstract
  
SRA Study Id SRP197552  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19 metagenome
Study Abstract
  
SRA Study Id SRP197676  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23 metagenome
Study Abstract
  
SRA Study Id SRP197554  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18 metagenome
Study Abstract
  
SRA Study Id SRP197672  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20 metagenome
Study Abstract
  
SRA Study Id SRP197671  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21 metagenome
Study Abstract
  
SRA Study Id SRP131554  (Link to NCBI )
Study Title Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 metagenome
Study Abstract
  
SRA Study Id SRP131555  (Link to NCBI )
Study Title Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 metagenome
Study Abstract
  
SRA Study Id SRP131553  (Link to NCBI )
Study Title Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 metagenome
Study Abstract
  
SRA Study Id SRP197689  (Link to NCBI )
Study Title Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108 metagenome
Study Abstract
  
SRA Study Id SRP197601  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23 metagenome
Study Abstract
  
SRA Study Id SRP197600  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24 metagenome
Study Abstract
  
SRA Study Id SRP197603  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24 metagenome
Study Abstract
  
SRA Study Id SRP197685  (Link to NCBI )
Study Title Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170 metagenome
Study Abstract
  
SRA Study Id SRP197564  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21 metagenome
Study Abstract
  
SRA Study Id SRP197687  (Link to NCBI )
Study Title Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082 metagenome
Study Abstract
  
SRA Study Id SRP197686  (Link to NCBI )
Study Title Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080 metagenome
Study Abstract
  
SRA Study Id SRP197681  (Link to NCBI )
Study Title Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172 metagenome
Study Abstract
  
SRA Study Id SRP197680  (Link to NCBI )
Study Title Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H metagenome
Study Abstract
  
SRA Study Id SRP197562  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18 metagenome
Study Abstract
  
SRA Study Id SRP191876  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22 metagenome
Study Abstract
  
SRA Study Id SRP191873  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19 metagenome
Study Abstract
  
SRA Study Id SRP197571  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22 metagenome
Study Abstract
  
SRA Study Id SRP197691  (Link to NCBI )
Study Title Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178 metagenome
Study Abstract
  
SRA Study Id SRP197572  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15 metagenome
Study Abstract
  
SRA Study Id SRP197690  (Link to NCBI )
Study Title Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176 metagenome
Study Abstract
  
SRA Study Id SRP191901  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21 metagenome
Study Abstract
  
SRA Study Id SRP191902  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23 metagenome
Study Abstract
  
SRA Study Id SRP191900  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20 metagenome
Study Abstract
  
SRA Study Id SRP197608  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25 metagenome
Study Abstract
  
SRA Study Id SRP191882  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26 metagenome
Study Abstract
  
SRA Study Id SRP197508  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23 metagenome
Study Abstract
  
SRA Study Id SRP191884  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20 metagenome
Study Abstract
  
SRA Study Id SRP191885  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26 metagenome
Study Abstract
  
SRA Study Id SRP197585  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17 metagenome
Study Abstract
  
SRA Study Id SRP197581  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18 metagenome
Study Abstract
  
SRA Study Id SRP197584  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16 metagenome
Study Abstract
  
SRA Study Id SRP191879  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26 metagenome
Study Abstract
  
SRA Study Id SRP191878  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23 metagenome
Study Abstract
  
SRA Study Id SRP197638  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26 metagenome
Study Abstract
  
SRA Study Id SRP197517  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23 metagenome
Study Abstract
  
SRA Study Id SRP191893  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22 metagenome
Study Abstract
  
SRA Study Id SRP197637  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28 metagenome
Study Abstract
  
SRA Study Id SRP191894  (Link to NCBI )
Study Title Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111 metagenome
Study Abstract
  
SRA Study Id SRP197519  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22 metagenome
Study Abstract
  
SRA Study Id SRP197639  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25 metagenome
Study Abstract
  
SRA Study Id SRP191892  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22 metagenome
Study Abstract
  
SRA Study Id SRP197634  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24 metagenome
Study Abstract
  
SRA Study Id SRP191897  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23 metagenome
Study Abstract
  
SRA Study Id SRP191898  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24 metagenome
Study Abstract
  
SRA Study Id SRP197636  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25 metagenome
Study Abstract
  
SRA Study Id SRP197515  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24 metagenome
Study Abstract
  
SRA Study Id SRP191896  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23 metagenome
Study Abstract
  
SRA Study Id SRP197514  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25 metagenome
Study Abstract
  
SRA Study Id SRP197635  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27 metagenome
Study Abstract
  
SRA Study Id SRP197599  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25 metagenome
Study Abstract
  
SRA Study Id SRP197510  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22 metagenome
Study Abstract
  
SRA Study Id SRP197594  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23 metagenome
Study Abstract
  
SRA Study Id SRP197591  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19 metagenome
Study Abstract
  
SRA Study Id SRP197590  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22 metagenome
Study Abstract
  
SRA Study Id SRP197649  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19 metagenome
Study Abstract
  
SRA Study Id SRP197527  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21 metagenome
Study Abstract
  
SRA Study Id SRP197648  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20 metagenome
Study Abstract
  
SRA Study Id SRP197529  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20 metagenome
Study Abstract
  
SRA Study Id SRP197644  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21 metagenome
Study Abstract
  
SRA Study Id SRP197526  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25 metagenome
Study Abstract
  
SRA Study Id SRP197647  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23 metagenome
Study Abstract
  
SRA Study Id SRP197646  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22 metagenome
Study Abstract
  
SRA Study Id SRP197520  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24 metagenome
Study Abstract
  
SRA Study Id SRP197640  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26 metagenome
Study Abstract
  
SRA Study Id SRP197643  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19 metagenome
Study Abstract
  
SRA Study Id SRP197642  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27 metagenome
Study Abstract
  
SRA Study Id SRP131563  (Link to NCBI )
Study Title Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 metagenome
Study Abstract
  
SRA Study Id SRP131561  (Link to NCBI )
Study Title Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 metagenome
Study Abstract
  
SRA Study Id SRP131562  (Link to NCBI )
Study Title Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 metagenome
Study Abstract
  
SRA Study Id SRP197539  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20 metagenome
Study Abstract
  
SRA Study Id SRP197659  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19 metagenome
Study Abstract
  
SRA Study Id SRP197535  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22 metagenome
Study Abstract
  
SRA Study Id SRP197655  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22 metagenome
Study Abstract
  
SRA Study Id SRP197658  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18 metagenome
Study Abstract
  
SRA Study Id SRP197537  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17 metagenome
Study Abstract
  
SRA Study Id SRP197536  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23 metagenome
Study Abstract
  
SRA Study Id SRP197657  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21 metagenome
Study Abstract
  
SRA Study Id SRP197651  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20 metagenome
Study Abstract
  
SRA Study Id SRP197654  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24 metagenome
Study Abstract
  
SRA Study Id SRP197653  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19 metagenome
Study Abstract
  
SRA Study Id SRP197650  (Link to NCBI )
Study Title Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21 metagenome
Study Abstract
  
SRA Study Id SRP131571  (Link to NCBI )
Study Title Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 metagenome
Study Abstract
  
Legacy ER Study ID
Legacy GOLD ID
Added By JGI automated process on 2017-03-17
Last Modified By Supratim Mukherjee on 2021-09-17
PI Jennifer Pett-Ridge
Description The rapid soil C cycling characteristic of wet tropical ecosystems is driven in part by high rainfall and warm temperatures. This combination causes tropical soils to alternate between aerobic and anaerobic conditions, constraining both the genetic capacity and activity of tropical soil microorganisms that regulate belowground C cycling. The goal of this project is to study how different patterns of soil O2 availability would shape community structure, genomic potential, gene expression, process rates, and microbial C processing, that can lead to altered degradation of C substrates.
Relevance
Study Information Visibility Public
Metagenomic Study Yes
Publication
Is GEBA
Is HMP
ECOSYSTEM CLASSIFICATION
Ecosystem Environmental
Ecosystem Category Terrestrial
Ecosystem Type Soil
Ecosystem Subtype Unclassified
Specific Ecosystem Unclassified
Ecosystem Path ID 4212
STUDY COMPOSITION
Number of Biosamples 106
Number of Organisms 0
Number of Seq Projects 106
Number of Analysis Projects 115
Number of Related Studies 0

 

 

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