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Study

Study Name: Sorghum-associated microbial communities from plants grown in Nebraska, USA

Projects

Biosamples

Organisms

Biosamples: 78 Seq. Projects: 287
STUDY INFORMATION
GOLD Study ID Gs0128848
Study Name Sorghum-associated microbial communities from plants grown in Nebraska, USA
Other Names
NCBI Umbrella Bioproject Name
NCBI Umbrella Bioproject ID
SRA Studies
SRA Study Id SRP245155  (Link to NCBI )
Study Title Microbacterium sp. 3290 Genome sequencing
Study Abstract
  
SRA Study Id SRP145023  (Link to NCBI )
Study Title Pseudomonas sp. 424 Genome sequencing
Study Abstract
  
SRA Study Id SRP194994  (Link to NCBI )
Study Title Delftia sp. HK171 Genome sequencing
Study Abstract
  
SRA Study Id SRP194995  (Link to NCBI )
Study Title Bacillus bataviensis 2482 genome sequencing
Study Abstract
  
SRA Study Id SRP194996  (Link to NCBI )
Study Title Brevibacterium frigoritolerans 3612 genome sequencing
Study Abstract
  
SRA Study Id SRP194990  (Link to NCBI )
Study Title Chryseobacterium aquifrigidense 110 genome sequencing
Study Abstract
  
SRA Study Id SRP194992  (Link to NCBI )
Study Title Pseudoxanthomonas sp. 3HH-4 Genome sequencing
Study Abstract
  
SRA Study Id SRP222718  (Link to NCBI )
Study Title Luteibacter yeojuensis 583 genome sequencing
Study Abstract
  
SRA Study Id SRP179400  (Link to NCBI )
Study Title Pseudomonas fluorescens FW300 25_6 genome sequencing
Study Abstract
  
SRA Study Id SRP222717  (Link to NCBI )
Study Title Inquilinus ginsengisoli 584 genome sequencing
Study Abstract
  
SRA Study Id SRP157850  (Link to NCBI )
Study Title Burkholderia sp. 28_3 strain:28_3 Genome sequencing
Study Abstract
  
SRA Study Id SRP222716  (Link to NCBI )
Study Title Enterobacter asburiae 609 genome sequencing
Study Abstract
  
SRA Study Id SRP222715  (Link to NCBI )
Study Title Paenibacillus illinoisensis 582 genome sequencing
Study Abstract
  
SRA Study Id SRP222759  (Link to NCBI )
Study Title Pseudomonas protegens 3295 genome sequencing
Study Abstract
  
SRA Study Id SRP157851  (Link to NCBI )
Study Title Burkholderia cenocepacia 28_4 genome sequencing
Study Abstract
  
SRA Study Id SRP245156  (Link to NCBI )
Study Title Pseudomonas fluorescens 513 genome sequencing
Study Abstract
  
SRA Study Id SRP157819  (Link to NCBI )
Study Title Mucilaginibacter sp. 94 strain:94 Genome sequencing
Study Abstract
  
SRA Study Id SRP222750  (Link to NCBI )
Study Title Herbaspirillum hiltneri 3195 genome sequencing
Study Abstract
  
SRA Study Id SRP130775  (Link to NCBI )
Study Title Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG metagenome
Study Abstract
  
SRA Study Id SRP157813  (Link to NCBI )
Study Title Pseudomonas mandelii YF10-2(1) 51 genome sequencing
Study Abstract
  
SRA Study Id SRP222751  (Link to NCBI )
Study Title Terrabacter lapilli 3265 genome sequencing
Study Abstract
  
SRA Study Id SRP157843  (Link to NCBI )
Study Title Ensifer adhaerens WJB133 25_10 genome sequencing
Study Abstract
  
SRA Study Id SRP157845  (Link to NCBI )
Study Title Leifsonia sp. M321 24_2 Genome sequencing
Study Abstract
  
SRA Study Id SRP157844  (Link to NCBI )
Study Title Sphingobium barthaii KK22 24_6 genome sequencing
Study Abstract
  
SRA Study Id SRP222747  (Link to NCBI )
Study Title Terrabacter sp. 3211 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP222746  (Link to NCBI )
Study Title Caulobacter rhizosphaerae 3260 genome sequencing
Study Abstract
  
SRA Study Id SRP222749  (Link to NCBI )
Study Title Terrabacter sp. 3264 genome sequencing
Study Abstract
  
SRA Study Id SRP222748  (Link to NCBI )
Study Title Filimonas endophytica 3197 genome sequencing
Study Abstract
  
SRA Study Id SRP157840  (Link to NCBI )
Study Title Flavobacterium johnsoniae 379 genome sequencing
Study Abstract
  
SRA Study Id SRP222743  (Link to NCBI )
Study Title Bacillus circulans 3243 genome sequencing
Study Abstract
  
SRA Study Id SRP222742  (Link to NCBI )
Study Title Variovorax sp. 1180 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP222745  (Link to NCBI )
Study Title Bacillus megaterium 3291 genome sequencing
Study Abstract
  
SRA Study Id SRP222744  (Link to NCBI )
Study Title Rhizobium lusitanum 1158 genome sequencing
Study Abstract
  
SRA Study Id SRP157847  (Link to NCBI )
Study Title Burkholderia cenocepacia VC2307 24_3 genome sequencing
Study Abstract
  
SRA Study Id SRP157846  (Link to NCBI )
Study Title Arthrobacter nicotinovorans 25_8 genome sequencing
Study Abstract
  
SRA Study Id SRP222741  (Link to NCBI )
Study Title Pseudomonas koreensis 3286 genome sequencing
Study Abstract
  
SRA Study Id SRP157849  (Link to NCBI )
Study Title Chitinophaga ginsengisegetis strain:28_1 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP222740  (Link to NCBI )
Study Title Streptomyces argenteolus 3259 genome sequencing
Study Abstract
  
SRA Study Id SRP157848  (Link to NCBI )
Study Title Exiguobacterium sp. B203-G5 25_7 Genome sequencing
Study Abstract
  
SRA Study Id SRP222690  (Link to NCBI )
Study Title Burkholderia cepacia 561 genome sequencing
Study Abstract
  
SRA Study Id SRP222692  (Link to NCBI )
Study Title Collimonas arenae 515 genome sequencing
Study Abstract
  
SRA Study Id SRP157832  (Link to NCBI )
Study Title Chitinophaga arvensicola 10_5 24_1 genome sequencing
Study Abstract
  
SRA Study Id SRP157831  (Link to NCBI )
Study Title Herbaspirillum sp. XFZ15 10_5 Genome sequencing
Study Abstract
  
SRA Study Id SRP157834  (Link to NCBI )
Study Title Pseudomonas sp. 2848 Genome sequencing
Study Abstract
  
SRA Study Id SRP157833  (Link to NCBI )
Study Title Herbaspirillum huttiense AU6965 10_3 genome sequencing
Study Abstract
  
SRA Study Id SRP222736  (Link to NCBI )
Study Title Sphingomonas trueperi 1152a genome sequencing
Study Abstract
  
SRA Study Id SRP222735  (Link to NCBI )
Study Title Herbaspirillum huttiense 1147 genome sequencing
Study Abstract
  
SRA Study Id SRP157830  (Link to NCBI )
Study Title Enterobacter cloacae colR/S 10_4 genome sequencing
Study Abstract
  
SRA Study Id SRP222732  (Link to NCBI )
Study Title Rhizobium miluonense 1234 genome sequencing
Study Abstract
  
SRA Study Id SRP130758  (Link to NCBI )
Study Title Endophyte microbial communities from Sorghum bicolor roots, Mead, Nebraska, USA - 072115-40_1 MetaG metagenome
Study Abstract
  
SRA Study Id SRP222731  (Link to NCBI )
Study Title Chitinophaga sancti 1232 genome sequencing
Study Abstract
  
SRA Study Id SRP130757  (Link to NCBI )
Study Title Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG metagenome
Study Abstract
  
SRA Study Id SRP157839  (Link to NCBI )
Study Title Novosphingobium sp. B3058 49 strain:49 Genome sequencing
Study Abstract
  
SRA Study Id SRP222733  (Link to NCBI )
Study Title Duganella sp. 1224 Genome sequencing
Study Abstract
  
SRA Study Id SRP157836  (Link to NCBI )
Study Title Arthrobacter sp. 1704 Genome sequencing
Study Abstract
  
SRA Study Id SRP157835  (Link to NCBI )
Study Title Acinetobacter sp. 3664 Genome sequencing
Study Abstract
  
SRA Study Id SRP222730  (Link to NCBI )
Study Title Novosphingobium barchaimii 1192 genome sequencing
Study Abstract
  
SRA Study Id SRP157838  (Link to NCBI )
Study Title Acinetobacter sp. 3636 Genome sequencing
Study Abstract
  
SRA Study Id SRP130755  (Link to NCBI )
Study Title Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG metagenome
Study Abstract
  
SRA Study Id SRP157837  (Link to NCBI )
Study Title Flavobacterium sp. JRR 20_7 Genome sequencing
Study Abstract
  
SRA Study Id SRP194987  (Link to NCBI )
Study Title Variovorax sp. T529 Genome sequencing
Study Abstract
  
SRA Study Id SRP194988  (Link to NCBI )
Study Title Acidovorax radicis 2721A genome sequencing
Study Abstract
  
SRA Study Id SRP194989  (Link to NCBI )
Study Title Stenotrophomonas maltophilia 1190 genome sequencing
Study Abstract
  
SRA Study Id SRP179397  (Link to NCBI )
Study Title Pseudomonas sp. 460 Genome sequencing
Study Abstract
  
SRA Study Id SRP222729  (Link to NCBI )
Study Title Lysinibacillus fusiformis 3193 genome sequencing
Study Abstract
  
SRA Study Id SRP157821  (Link to NCBI )
Study Title Pseudomonas sp. 443 Genome sequencing
Study Abstract
  
SRA Study Id SRP222728  (Link to NCBI )
Study Title Chitinophaga polysaccharea 1209 genome sequencing
Study Abstract
  
SRA Study Id SRP157820  (Link to NCBI )
Study Title Enterobacter asburiae 1216 Genome sequencing
Study Abstract
  
SRA Study Id SRP157823  (Link to NCBI )
Study Title Arthrobacter sp. RC1.1 241 Genome sequencing
Study Abstract
  
SRA Study Id SRP179398  (Link to NCBI )
Study Title Flavobacterium sp. S87F.05.LMB.W.Kidney.N Genome sequencing
Study Abstract
  
SRA Study Id SRP157822  (Link to NCBI )
Study Title Pseudomonas sp. 1766 Genome sequencing
Study Abstract
  
SRA Study Id SRP179399  (Link to NCBI )
Study Title Agrobacterium tumefaciens G9TT5 10_2 genome sequencing
Study Abstract
  
SRA Study Id SRP222725  (Link to NCBI )
Study Title Neorhizobium alkalisoli 1225 genome sequencing
Study Abstract
  
SRA Study Id SRP222724  (Link to NCBI )
Study Title Bacillus thuringiensis 1230 genome sequencing
Study Abstract
  
SRA Study Id SRP135653  (Link to NCBI )
Study Title Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG
Study Abstract
  
SRA Study Id SRP222727  (Link to NCBI )
Study Title Bosea vestrisii 3192 genome sequencing
Study Abstract
  
SRA Study Id SRP222726  (Link to NCBI )
Study Title Chitinophaga pinensis 1204 genome sequencing
Study Abstract
  
SRA Study Id SRP222721  (Link to NCBI )
Study Title Paenibacillus sp. 597 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP157829  (Link to NCBI )
Study Title Microbacterium chocolatum 1320 genome sequencing
Study Abstract
  
SRA Study Id SRP222687  (Link to NCBI )
Study Title Caulobacter henricii 536 genome sequencing
Study Abstract
  
SRA Study Id SRP222720  (Link to NCBI )
Study Title Rhizobium cellulosilyticum 1193 genome sequencing
Study Abstract
  
SRA Study Id SRP157828  (Link to NCBI )
Study Title Microbacterium sp. 1294 Genome sequencing
Study Abstract
  
SRA Study Id SRP222723  (Link to NCBI )
Study Title Agrobacterium tumefaciens 1187 genome sequencing
Study Abstract
  
SRA Study Id SRP222722  (Link to NCBI )
Study Title Burkholderia sp. 604 genome sequencing
Study Abstract
  
SRA Study Id SRP222684  (Link to NCBI )
Study Title Pedobacter terrae 518 genome sequencing
Study Abstract
  
SRA Study Id SRP157825  (Link to NCBI )
Study Title Pseudomonas sp. 478 Genome sequencing
Study Abstract
  
SRA Study Id SRP222760  (Link to NCBI )
Study Title Bacillus safensis 3300 genome sequencing
Study Abstract
  
SRA Study Id SRP157824  (Link to NCBI )
Study Title Clavibacter sp. 199 Genome sequencing
Study Abstract
  
SRA Study Id SRP130767  (Link to NCBI )
Study Title Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG metagenome
Study Abstract
  
SRA Study Id SRP222685  (Link to NCBI )
Study Title Xanthomonas translucens 569 genome sequencing
Study Abstract
  
SRA Study Id SRP157826  (Link to NCBI )
Study Title Chryseobacterium sp. 1335 Genome sequencing
Study Abstract
  
Legacy ER Study ID
Legacy GOLD ID
Added By JGI automated process on 2017-03-17
Last Modified By JGI automated process on 2019-09-06
PI Daniel Schachtman
Description The manipulation of root associated microbes has the potential to drive increased yield potential through numerous mechanisms. In this project the development of microbial probiotics to improve plant productivity and stress tolerance will be aided by the discovery of microbial strains and consortia that are active across plant taxa. In addition to core members of a root microbiome, there may be unique members that are likely to arise due to different features of the site-specific soil communities, specific edaphic conditions (e.g., low water availability or low nutrient availability), and plant species-specific root exudates. These unique or specific contributions to the root microbiome will need to be considered in defining effective plant probiotic strains and consortia for sorghum.
Relevance
Study Information Link
Study Information Visibility Public
Metagenomic Study Yes
Publication
Is GEBA
Is HMP
ECOSYSTEM CLASSIFICATION
Ecosystem Host-associated
Ecosystem Category Plants
Ecosystem Type Unclassified
Ecosystem Subtype Unclassified
Specific Ecosystem Unclassified
STUDY COMPOSITION
Number of Biosamples 78
Number of Organisms 209
Number of Seq Projects 287
Number of Analysis Projects 287
Number of Related Studies 0

 

 

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