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Study

Study Name: Systems level insights into methane cycling in arid and semi-arid ecosystems

Projects

Biosamples

Organisms

Biosamples: 65 Seq. Projects: 101
STUDY INFORMATION
GOLD Study ID Gs0128792
Study Name Systems level insights into methane cycling in arid and semi-arid ecosystems
Other Names
NCBI Umbrella Bioproject Name
NCBI Umbrella Bioproject ID
SRA Studies
SRA Study Id SRP140010  (Link to NCBI )
Study Title Soil microbial communities from Anza Borrego desert, Southern California, United States - S1_5 metagenome
Study Abstract
  
SRA Study Id SRP140013  (Link to NCBI )
Study Title Soil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_20-13C metagenome
Study Abstract
  
SRA Study Id SRP260826  (Link to NCBI )
Study Title Metatranscriptome of Boechera depauperate grown with Bradyrhizobium sp. W and Methylocaldum sp. 0917 mixed culture communities from SDSU, California, USA - Exp#4 BR2
Study Abstract
  
SRA Study Id SRP191004  (Link to NCBI )
Study Title Soil microbial communities from Anza Borrego Desert, Southern California, United States - Methanotrophic co-culture R2-M metagenome
Study Abstract
  
SRA Study Id SRP140011  (Link to NCBI )
Study Title Soil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_10-13C metagenome
Study Abstract
  
SRA Study Id SRP260828  (Link to NCBI )
Study Title Metatranscriptome of Bradyrhizobium sp. W and Methylocaldum sp. 0917 mixed culture communities from SDSU, California, USA - Exp#7 BR1
Study Abstract
  
SRA Study Id SRP179444  (Link to NCBI )
Study Title Soil microbial communities from Anza Borrego Desert, Southern California, United States - Methanotrophic co-culture R3-M metagenome
Study Abstract
  
SRA Study Id SRP179445  (Link to NCBI )
Study Title Soil microbial communities from San-Diego area, Southern California, United States - Methylocaldum sp. NOR-M metagenome
Study Abstract
  
SRA Study Id SRP260672  (Link to NCBI )
Study Title Metatranscriptome of Bradyrhizobium sp. W culture communities from SDSU, California, USA - Exp#2 BR1
Study Abstract
  
SRA Study Id SRP179446  (Link to NCBI )
Study Title Soil microbial communities from San-Diego area, Southern California, United States - Methylocaldum sp. RMAD-M metagenome
Study Abstract
  
SRA Study Id SRP179447  (Link to NCBI )
Study Title Soil microbial communities from Anza Borrego Desert, Southern California, United States - Bradyrhizobium sp. S3-V5C metagenome
Study Abstract
  
SRA Study Id SRP228332  (Link to NCBI )
Study Title Mesorhizobium sp. RMAD-H1 Genome sequencing
Study Abstract
  
SRA Study Id SRP228333  (Link to NCBI )
Study Title Methylobacterium sp. R2-1 Genome sequencing
Study Abstract
  
SRA Study Id SRP140020  (Link to NCBI )
Study Title Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_5-13C metagenome
Study Abstract
  
SRA Study Id SRP246695  (Link to NCBI )
Study Title Caulobacter sp. H1 strain:H1 Genome sequencing
Study Abstract
  
SRA Study Id SRP140025  (Link to NCBI )
Study Title Soil microbial communities from Anza Borrego desert, Southern California, United States - S3_10-13C metagenome
Study Abstract
  
SRA Study Id SRP140024  (Link to NCBI )
Study Title Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_20-13C metagenome
Study Abstract
  
SRA Study Id SRP140023  (Link to NCBI )
Study Title Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_10-13C metagenome
Study Abstract
  
SRA Study Id SRP140022  (Link to NCBI )
Study Title Soil microbial communities from Anza Borrego desert, Southern California, United States - S3_20-13C metagenome
Study Abstract
  
SRA Study Id SRP140027  (Link to NCBI )
Study Title Soil microbial communities from Anza Borrego desert, Southern California, United States - S1_5-13C metagenome
Study Abstract
  
SRA Study Id SRP140026  (Link to NCBI )
Study Title Soil microbial communities from Anza Borrego desert, Southern California, United States - S1_10-13C metagenome
Study Abstract
  
SRA Study Id SRP179451  (Link to NCBI )
Study Title Soil microbial communities from Anza Borrego Desert, Southern California, United States - Methanotrophic co-culture BM metagenome
Study Abstract
  
SRA Study Id SRP183749  (Link to NCBI )
Study Title Metatranscriptome of soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_20
Study Abstract
  
SRA Study Id SRP179456  (Link to NCBI )
Study Title Soil microbial communities from Anza Borrego Desert, Southern California, United States - Methanotrophic co-culture R1-M metagenome
Study Abstract
  
SRA Study Id SRP179459  (Link to NCBI )
Study Title Soil microbial communities from Anza Borrego Desert, Southern California, United States - Methylocaldum Y-M1 metagenome
Study Abstract
  
SRA Study Id SRP183751  (Link to NCBI )
Study Title Metatranscriptome of soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_5
Study Abstract
  
SRA Study Id SRP183754  (Link to NCBI )
Study Title Metatranscriptome of soil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_20
Study Abstract
  
SRA Study Id SRP179457  (Link to NCBI )
Study Title Soil microbial communities from Anza Borrego Desert, Southern California, United States - Methanotrophic co-culture R2.2-M metagenome
Study Abstract
  
SRA Study Id SRP260823  (Link to NCBI )
Study Title Metatranscriptome of Boechera depauperate grown with Bradyrhizobium sp. W and Methylocaldum sp. 0917 mixed culture communities from SDSU, California, USA - Exp#4 BR1
Study Abstract
  
SRA Study Id SRP260625  (Link to NCBI )
Study Title Metatranscriptome of Methylocaldum sp. 0917 culture communities from SDSU, California, USA - Exp#1 BR1
Study Abstract
  
SRA Study Id SRP260824  (Link to NCBI )
Study Title Metatranscriptome of Boechera depauperate grown with Bradyrhizobium sp. W and Methylocaldum sp. 0917 mixed culture communities from SDSU, California, USA - Exp#4 BR3
Study Abstract
  
SRA Study Id SRP260806  (Link to NCBI )
Study Title Metatranscriptome of Bradyrhizobium sp. W and Methylocaldum sp. 0917 mixed culture communities from SDSU, California, USA - Exp#3 BR3
Study Abstract
  
SRA Study Id SRP179462  (Link to NCBI )
Study Title Soil microbial communities from Anza Borrego Desert, Southern California, United States - Methylocaldum S3-V5B metagenome
Study Abstract
  
SRA Study Id SRP179463  (Link to NCBI )
Study Title Neorhizobium sp. R1-B Genome sequencing
Study Abstract
  
SRA Study Id SRP183759  (Link to NCBI )
Study Title Metatranscriptome of soil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_10-13C
Study Abstract
  
SRA Study Id SRP179460  (Link to NCBI )
Study Title Soil microbial communities from Anza Borrego Desert, Southern California, United States - Methylocaldum Y-M2 metagenome
Study Abstract
  
SRA Study Id SRP179461  (Link to NCBI )
Study Title Soil microbial communities from Anza Borrego Desert, Southern California, United States - Methylocaldum S3-V5D metagenome
Study Abstract
  
SRA Study Id SRP179466  (Link to NCBI )
Study Title Bradyrhizobium sp. R2.2-H Genome sequencing
Study Abstract
  
SRA Study Id SRP179467  (Link to NCBI )
Study Title Neorhizobium sp. S3-V5DH Genome sequencing
Study Abstract
  
SRA Study Id SRP179464  (Link to NCBI )
Study Title Methylocaldum sp. 0917 Genome sequencing
Study Abstract
  
SRA Study Id SRP183769  (Link to NCBI )
Study Title Metatranscriptome of soil microbial communities from Anza Borrego desert, Southern California, United States - S3_20-13C
Study Abstract
  
SRA Study Id SRP260651  (Link to NCBI )
Study Title Metatranscriptome of Methylocaldum sp. 0917 culture communities from SDSU, California, USA - Exp#1 BR2
Study Abstract
  
SRA Study Id SRP183763  (Link to NCBI )
Study Title Metatranscriptome of soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_5-13C
Study Abstract
  
SRA Study Id SRP183762  (Link to NCBI )
Study Title Metatranscriptome of soil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_20-13C
Study Abstract
  
SRA Study Id SRP179468  (Link to NCBI )
Study Title Bradyrhizobium sp. W strain:W Genome sequencing
Study Abstract
  
SRA Study Id SRP183761  (Link to NCBI )
Study Title Metatranscriptome of soil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_5-13C
Study Abstract
  
SRA Study Id SRP260654  (Link to NCBI )
Study Title Metatranscriptome of Methylocaldum sp. 0917 culture communities from SDSU, California, USA - Exp#1 BR3
Study Abstract
  
SRA Study Id SRP260837  (Link to NCBI )
Study Title Metatranscriptome of Bradyrhizobium sp. W and Methylocaldum sp. 0917 mixed culture communities from SDSU, California, USA - Exp#7 BR2
Study Abstract
  
SRA Study Id SRP140007  (Link to NCBI )
Study Title Soil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_5-13C metagenome
Study Abstract
  
SRA Study Id SRP140006  (Link to NCBI )
Study Title Soil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_20 metagenome
Study Abstract
  
SRA Study Id SRP140005  (Link to NCBI )
Study Title Soil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_10 metagenome
Study Abstract
  
SRA Study Id SRP140009  (Link to NCBI )
Study Title Soil microbial communities from Anza Borrego desert, Southern California, United States - S1_10 metagenome
Study Abstract
  
SRA Study Id SRP140008  (Link to NCBI )
Study Title Soil microbial communities from Anza Borrego desert, Southern California, United States - S1_20 metagenome
Study Abstract
  
SRA Study Id SRP179478  (Link to NCBI )
Study Title Methylosinus sp. sav-2 Genome sequencing
Study Abstract
  
SRA Study Id SRP179475  (Link to NCBI )
Study Title Bradyrhizobium sp. BM-T Genome sequencing
Study Abstract
  
SRA Study Id SRP179476  (Link to NCBI )
Study Title Methylomonas methanica S-1 genome sequencing
Study Abstract
  
SRA Study Id SRP152773  (Link to NCBI )
Study Title Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_5 metagenome
Study Abstract
  
SRA Study Id SRP179479  (Link to NCBI )
Study Title Bradyrhizobium sp. Y-H1 Genome sequencing
Study Abstract
  
SRA Study Id SRP152772  (Link to NCBI )
Study Title Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_20 metagenome
Study Abstract
  
SRA Study Id SRP260843  (Link to NCBI )
Study Title Metatranscriptome of Bradyrhizobium sp. W and Methylocaldum sp. 0917 mixed culture communities from SDSU, California, USA - Exp#7 BR3
Study Abstract
  
SRA Study Id SRP260767  (Link to NCBI )
Study Title Metatranscriptome of Bradyrhizobium sp. W culture communities from SDSU, California, USA - Exp#2 BR3
Study Abstract
  
SRA Study Id SRP260800  (Link to NCBI )
Study Title Metatranscriptome of Bradyrhizobium sp. W and Methylocaldum sp. 0917 mixed culture communities from SDSU, California, USA - Exp#3 BR2
Study Abstract
  
SRA Study Id SRP260802  (Link to NCBI )
Study Title Metatranscriptome of Bradyrhizobium sp. W and Methylocaldum sp. 0917 mixed culture communities from SDSU, California, USA - Exp#3 BR1
Study Abstract
  
SRA Study Id SRP260765  (Link to NCBI )
Study Title Metatranscriptome of Bradyrhizobium sp. W culture communities from SDSU, California, USA - Exp#2 BR2
Study Abstract
  
Legacy ER Study ID
Legacy GOLD ID
Added By JGI automated process on 2017-03-07
Last Modified By JGI automated process on 2019-09-06
PI Marina Kalyuzhnaya
Description The goal of the study is to underline mechanisms that enable and/or stimulate growth and activity of methane-consuming bacteria in arid soils.
Relevance
Study Information Link
Study Information Visibility Public
Metagenomic Study Yes
Publication
Is GEBA
Is HMP
ECOSYSTEM CLASSIFICATION
Ecosystem Environmental
Ecosystem Category Terrestrial
Ecosystem Type Soil
Ecosystem Subtype Unclassified
Specific Ecosystem Unclassified
STUDY COMPOSITION
Number of Biosamples 65
Number of Organisms 18
Number of Seq Projects 101
Number of Analysis Projects 75
Number of Related Studies 0

 

 

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