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Study

Study Name: Comparative genomics of the shiitake genus Lentinula

Projects

Biosamples

Organisms

Biosamples: 3 Seq. Projects: 353
STUDY INFORMATION
GOLD Study ID Gs0128791
Study Name Comparative genomics of the shiitake genus Lentinula
Other Names
NCBI Umbrella Bioproject Name
NCBI Umbrella Bioproject Accession
SRA Studies
SRA Study Id SRP164343  (Link to NCBI )
Study Title Lentinula afn. lateritia sp2 HRB7682 ss15 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP219544  (Link to NCBI )
Study Title Lentinula afn. boryana ET3784 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP393760  (Link to NCBI )
Study Title Lentinula edodes H600 Gene Expression Profiling - 2Md_1Ml_sawdust media_1dc_2
Study Abstract
  
SRA Study Id SRP393762  (Link to NCBI )
Study Title Lentinula edodes H600 Gene Expression Profiling - 2Md_1Ml_sawdust media_2dc_1
Study Abstract
  
SRA Study Id SRP393761  (Link to NCBI )
Study Title Lentinula edodes H600 Gene Expression Profiling - 2Md_1Ml_sawdust media_1dc_3
Study Abstract
  
SRA Study Id SRP393768  (Link to NCBI )
Study Title Lentinula edodes H600 Gene Expression Profiling - stipe_2_3
Study Abstract
  
SRA Study Id SRP393801  (Link to NCBI )
Study Title Lentinula aciculospora JLM2183 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP393767  (Link to NCBI )
Study Title Lentinula edodes H600 Gene Expression Profiling - stipe_2_2
Study Abstract
  
SRA Study Id SRP393769  (Link to NCBI )
Study Title Lentinula edodes H600 Gene Expression Profiling - young_fruiting body_2_2
Study Abstract
  
SRA Study Id SRP393764  (Link to NCBI )
Study Title Lentinula edodes H600 Gene Expression Profiling - cap_1_3
Study Abstract
  
SRA Study Id SRP393763  (Link to NCBI )
Study Title Lentinula edodes H600 Gene Expression Profiling - cap_1_2
Study Abstract
  
SRA Study Id SRP393766  (Link to NCBI )
Study Title Lentinula edodes H600 Gene Expression Profiling - stipe_1_3
Study Abstract
  
SRA Study Id SRP393765  (Link to NCBI )
Study Title Lentinula edodes H600 Gene Expression Profiling - stipe_2_1
Study Abstract
  
SRA Study Id SRP232981  (Link to NCBI )
Study Title Lentinula afn. boryana TFB7829 Transcriptome - TFB7829R-alt
Study Abstract
  
SRA Study Id SRP232980  (Link to NCBI )
Study Title Lentinula afn. boryana TFB7829 Transcriptome - TFB7829R
Study Abstract
  
SRA Study Id SRP393771  (Link to NCBI )
Study Title Lentinula edodes H600 Gene Expression Profiling - cap_1_1
Study Abstract
  
SRA Study Id SRP393770  (Link to NCBI )
Study Title Lentinula edodes H600 Gene Expression Profiling - stipe_1_1
Study Abstract
  
SRA Study Id SRP393773  (Link to NCBI )
Study Title Lentinula edodes H600 Gene Expression Profiling - young_fruiting body_2_1
Study Abstract
  
SRA Study Id SRP393772  (Link to NCBI )
Study Title Lentinula edodes H600 Gene Expression Profiling - young_fruiting body_1_3
Study Abstract
  
SRA Study Id SRP284377  (Link to NCBI )
Study Title Lentinula novae-zelandiae RHP7563 Transcriptome - 7563R
Study Abstract
  
SRA Study Id SRP224724  (Link to NCBI )
Study Title Lentinula afn. boryana TFB7829 Minimal Draft genome sequencing
Study Abstract
  
SRA Study Id SRP393779  (Link to NCBI )
Study Title Lentinula edodes H600 Gene Expression Profiling - gill_D0_2
Study Abstract
  
SRA Study Id SRP393811  (Link to NCBI )
Study Title Lentinula lateritia RV95-379 Transcriptome - 95-379R
Study Abstract
  
SRA Study Id SRP393778  (Link to NCBI )
Study Title Lentinula edodes H600 Gene Expression Profiling - gill_D0_1
Study Abstract
  
SRA Study Id SRP224723  (Link to NCBI )
Study Title Lentinula raphanica TFB9207 Minimal Draft genome sequencing
Study Abstract
  
SRA Study Id SRP393775  (Link to NCBI )
Study Title Lentinula edodes H600 Gene Expression Profiling - cap_2_3
Study Abstract
  
SRA Study Id SRP393774  (Link to NCBI )
Study Title Lentinula edodes H600 Gene Expression Profiling - cap_2_2
Study Abstract
  
SRA Study Id SRP393777  (Link to NCBI )
Study Title Lentinula edodes H600 Gene Expression Profiling - young_fruiting body_1_2
Study Abstract
  
SRA Study Id SRP393776  (Link to NCBI )
Study Title Lentinula edodes H600 Gene Expression Profiling - young_fruiting body_2_3
Study Abstract
  
SRA Study Id SRP137462  (Link to NCBI )
Study Title Lentinula raphanica INPA1701G ss19 transcriptome - INPA1701Gss19-R
Study Abstract
  
SRA Study Id SRP138430  (Link to NCBI )
Study Title Lentinula afn. lateritia sp2 HRB7682 ss15 transcriptome - HRB7682ss15-R
Study Abstract
  
SRA Study Id SRP137463  (Link to NCBI )
Study Title Lentinula lateritia RHP3577 ss4 transcriptome - RHP3577ss4-R
Study Abstract
  
SRA Study Id SRP256620  (Link to NCBI )
Study Title Lentinula boryana TFB7810 ss12 Transcriptome - 7810R
Study Abstract
  
SRA Study Id SRP393782  (Link to NCBI )
Study Title Lentinula edodes H600 Gene Expression Profiling - gill_D2_2
Study Abstract
  
SRA Study Id SRP393781  (Link to NCBI )
Study Title Lentinula edodes H600 Gene Expression Profiling - gill_D2_1
Study Abstract
  
SRA Study Id SRP393783  (Link to NCBI )
Study Title Lentinula edodes H600 Gene Expression Profiling - gill_D2_3
Study Abstract
  
SRA Study Id SRP393780  (Link to NCBI )
Study Title Lentinula edodes H600 Gene Expression Profiling - gill_D0_3
Study Abstract
  
SRA Study Id SRP393546  (Link to NCBI )
Study Title Lentinula aciculospora JLM2183 Transcriptome - JLM2183-R
Study Abstract
  
SRA Study Id SRP393545  (Link to NCBI )
Study Title Lentinula aciculospora JLM2183 Transcriptome - JLM2183R
Study Abstract
  
SRA Study Id SRP228503  (Link to NCBI )
Study Title Lentinula edodes CS-584 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP228508  (Link to NCBI )
Study Title Lentinula edodes CS-584 Transcriptome - CS-584-R
Study Abstract
  
SRA Study Id SRP183612  (Link to NCBI )
Study Title Lentinula raphanica TFB8682 Minimal Draft genome sequencing
Study Abstract
  
SRA Study Id SRP183615  (Link to NCBI )
Study Title Lentinula raphanica TFB9929 ss4 Minimal Draft genome sequencing
Study Abstract
  
SRA Study Id SRP280394  (Link to NCBI )
Study Title Lentinula boryana TFB10292 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP228340  (Link to NCBI )
Study Title Lentinula boryana TFB10827 Transcriptome - TFB10827-R
Study Abstract
  
SRA Study Id SRP228337  (Link to NCBI )
Study Title Lentinula boryana TFB10827 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP137442  (Link to NCBI )
Study Title Lentinula edodes Le(Bin) 0899 ss11 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP137443  (Link to NCBI )
Study Title Lentinula edodes Le(Bin) 0899 ss11 transcriptome - Le(Bin)0899ss11-R
Study Abstract
  
SRA Study Id SRP224370  (Link to NCBI )
Study Title Lentinula raphanica JLM1587 Minimal Draft genome sequencing
Study Abstract
  
SRA Study Id SRP183737  (Link to NCBI )
Study Title Lentinula novae-zelandieae TMI-1172 Minimal Draft genome sequencing
Study Abstract
  
SRA Study Id SRP183742  (Link to NCBI )
Study Title Lentinula afn. lateritia sp 3 TMI1502 Minimal Draft genome sequencing
Study Abstract
  
SRA Study Id SRP280520  (Link to NCBI )
Study Title Lentinula edodes CS-560 Transcriptome - CS-560-R
Study Abstract
  
SRA Study Id SRP228336  (Link to NCBI )
Study Title Lentinula boryana TFB10291 Transcriptome - TFB10291-R
Study Abstract
  
SRA Study Id SRP224364  (Link to NCBI )
Study Title Lentinula edodes TMI1148 Minimal Draft genome sequencing
Study Abstract
  
SRA Study Id SRP194526  (Link to NCBI )
Study Title Lentinula raphanica INPA1820 Minimal Draft genome sequencing
Study Abstract
  
SRA Study Id SRP194527  (Link to NCBI )
Study Title Lentinula raphanica INPA1820 Transcriptome - INPA1820-R
Study Abstract
  
SRA Study Id SRP137451  (Link to NCBI )
Study Title Lentinula raphanica INPA1701G ss19 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP393728  (Link to NCBI )
Study Title Lentinula edodes H600 Gene Expression Profiling - 2Md_1Ml_sawdust media_2
Study Abstract
  
SRA Study Id SRP137452  (Link to NCBI )
Study Title Lentinula lateritia RHP3577 ss4 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP393727  (Link to NCBI )
Study Title Lentinula edodes H600 Gene Expression Profiling - 2Md_1Ml_sawdust media_3
Study Abstract
  
SRA Study Id SRP293200  (Link to NCBI )
Study Title Lentinula boryana TFB10292 Transcriptome - 10292R
Study Abstract
  
SRA Study Id SRP393729  (Link to NCBI )
Study Title Lentinula edodes H600 Gene Expression Profiling - 2Md_1Ml_sawdust media_1dc_1
Study Abstract
  
SRA Study Id SRP231333  (Link to NCBI )
Study Title Lentinula edodes VB361 Transcriptome - VB361R
Study Abstract
  
SRA Study Id SRP239698  (Link to NCBI )
Study Title Lentinula boryana TFB10291 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP393735  (Link to NCBI )
Study Title Lentinula edodes H600 Gene Expression Profiling - 2Md_1Ml_sawdust media_1
Study Abstract
  
SRA Study Id SRP393734  (Link to NCBI )
Study Title Lentinula edodes H600 Gene Expression Profiling - 3M_sawdust media_2
Study Abstract
  
SRA Study Id SRP393737  (Link to NCBI )
Study Title Lentinula edodes H600 Gene Expression Profiling - mycelia with primordia_stage1_2
Study Abstract
  
SRA Study Id SRP393736  (Link to NCBI )
Study Title Lentinula edodes H600 Gene Expression Profiling - mycelia with primordia_stage1_3
Study Abstract
  
SRA Study Id SRP393731  (Link to NCBI )
Study Title Lentinula edodes H600 Gene Expression Profiling - 2M_sawdust media_3
Study Abstract
  
SRA Study Id SRP224369  (Link to NCBI )
Study Title Lentinula raphanica JLM1587 Transcriptome - JLM1587-R
Study Abstract
  
SRA Study Id SRP393730  (Link to NCBI )
Study Title Lentinula edodes H600 Gene Expression Profiling - stipe_1_2
Study Abstract
  
SRA Study Id SRP224366  (Link to NCBI )
Study Title Lentinula edodes VB361 Minimal Draft genome sequencing
Study Abstract
  
SRA Study Id SRP393733  (Link to NCBI )
Study Title Lentinula edodes H600 Gene Expression Profiling - 3M_sawdust media_3
Study Abstract
  
SRA Study Id SRP224367  (Link to NCBI )
Study Title Lentinula lateritia TMI1499 Minimal Draft genome sequencing
Study Abstract
  
SRA Study Id SRP393732  (Link to NCBI )
Study Title Lentinula edodes H600 Gene Expression Profiling - 3M_sawdust media_1
Study Abstract
  
SRA Study Id SRP231326  (Link to NCBI )
Study Title Lentinula edodes TMI1633 Minimal Draft genome sequencing
Study Abstract
  
SRA Study Id SRP393739  (Link to NCBI )
Study Title Lentinula edodes H600 Gene Expression Profiling - 2M_sawdust media_2
Study Abstract
  
SRA Study Id SRP393738  (Link to NCBI )
Study Title Lentinula edodes H600 Gene Expression Profiling - mycelia on agar_2
Study Abstract
  
SRA Study Id SRP393740  (Link to NCBI )
Study Title Lentinula edodes H600 Gene Expression Profiling - 2M_sawdust media_1
Study Abstract
  
SRA Study Id SRP393746  (Link to NCBI )
Study Title Lentinula edodes H600 Gene Expression Profiling - 1M_sawdust media_3
Study Abstract
  
SRA Study Id SRP393745  (Link to NCBI )
Study Title Lentinula edodes H600 Gene Expression Profiling - gill_D4_3
Study Abstract
  
SRA Study Id SRP393748  (Link to NCBI )
Study Title Lentinula edodes H600 Gene Expression Profiling - gill_D4_1
Study Abstract
  
SRA Study Id SRP393747  (Link to NCBI )
Study Title Lentinula edodes H600 Gene Expression Profiling - young_fruiting body_1_1
Study Abstract
  
SRA Study Id SRP194528  (Link to NCBI )
Study Title Lentinula raphanica TFB8682 Transcriptome - TFB8682-R
Study Abstract
  
SRA Study Id SRP393742  (Link to NCBI )
Study Title Lentinula edodes H600 Gene Expression Profiling - 1M_sawdust media_1
Study Abstract
  
SRA Study Id SRP393741  (Link to NCBI )
Study Title Lentinula edodes H600 Gene Expression Profiling - gill_D4_2
Study Abstract
  
SRA Study Id SRP393744  (Link to NCBI )
Study Title Lentinula edodes H600 Gene Expression Profiling - 1M_sawdust media_2
Study Abstract
  
SRA Study Id SRP393743  (Link to NCBI )
Study Title Lentinula edodes H600 Gene Expression Profiling - mycelia on agar_3
Study Abstract
  
SRA Study Id SRP231317  (Link to NCBI )
Study Title Lentinula boryana TFB7810 ss12 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP231318  (Link to NCBI )
Study Title Lentinula afn. boryana ET3784 Transcriptome - ET3784-R
Study Abstract
  
SRA Study Id SRP393749  (Link to NCBI )
Study Title Lentinula edodes H600 Gene Expression Profiling - primordia_stage1_2
Study Abstract
  
SRA Study Id SRP231319  (Link to NCBI )
Study Title Lentinula afn. boryana ET3784 Transcriptome - ET3784R
Study Abstract
  
SRA Study Id SRP393751  (Link to NCBI )
Study Title Lentinula edodes H600 Gene Expression Profiling - mycelia with primordia_stage1_1
Study Abstract
  
SRA Study Id SRP393750  (Link to NCBI )
Study Title Lentinula edodes H600 Gene Expression Profiling - primordia_stage1_3
Study Abstract
  
SRA Study Id SRP224748  (Link to NCBI )
Study Title Lentinula raphanica TFB9207 Transcriptome - TFB9207-R
Study Abstract
  
SRA Study Id SRP393757  (Link to NCBI )
Study Title Lentinula edodes H600 Gene Expression Profiling - primordia_stage0_1
Study Abstract
  
SRA Study Id SRP393756  (Link to NCBI )
Study Title Lentinula edodes H600 Gene Expression Profiling - mycelia with primordia_stage0_1
Study Abstract
  
SRA Study Id SRP393759  (Link to NCBI )
Study Title Lentinula edodes H600 Gene Expression Profiling - mycelia on agar_1
Study Abstract
  
SRA Study Id SRP393758  (Link to NCBI )
Study Title Lentinula edodes H600 Gene Expression Profiling - primordia_stage0_2
Study Abstract
  
SRA Study Id SRP393753  (Link to NCBI )
Study Title Lentinula edodes H600 Gene Expression Profiling - mycelia with primordia_stage0_3
Study Abstract
  
SRA Study Id SRP393752  (Link to NCBI )
Study Title Lentinula edodes H600 Gene Expression Profiling - mycelia with primordia_stage0_2
Study Abstract
  
SRA Study Id SRP393755  (Link to NCBI )
Study Title Lentinula edodes H600 Gene Expression Profiling - primordia_stage0_3
Study Abstract
  
SRA Study Id SRP393754  (Link to NCBI )
Study Title Lentinula edodes H600 Gene Expression Profiling - primordia_stage1_1
Study Abstract
  
Legacy ER Study ID
Legacy GOLD ID
Added By JGI automated process on 2017-03-07
Last Modified By TBK Reddy on 2022-08-23
PI David S. Hibbett
Description Comparative and functional genomics of shiitake mushrooms to resolve evolutionary relationships, substrate specificity, growth profiles, and routes to domestication in the amphi-Pacific genus Lentinula
Relevance
Study Information Visibility Public
Metagenomic Study Yes
Publication
Is GEBA
Is HMP
ECOSYSTEM CLASSIFICATION
Ecosystem
Ecosystem Category
Ecosystem Type
Ecosystem Subtype
Specific Ecosystem
Ecosystem Path ID 1
STUDY COMPOSITION
Number of Biosamples 3
Number of Organisms 272
Number of Seq Projects 353
Number of Analysis Projects 8
Number of Related Studies 0

 

 

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