The following elements will have their visibility changed, please review the list before confirming the visibility change

Study

Study Name: Groundwater microbial communities from three deep subsurface sites in Europe

Projects

Biosamples

Organisms

Biosamples: 354 Seq. Projects: 554
STUDY INFORMATION
GOLD Study ID Gs0127568
Study Name Groundwater microbial communities from three deep subsurface sites in Europe
Other Names
NCBI Umbrella Bioproject Name
NCBI Umbrella Bioproject ID
SRA Studies
SRA Study Id SRP234255  (Link to NCBI )
Study Title Thermoleophilia bacterium strain:JGI_KA33_B08_062 Genome sequencing
Study Abstract
  
SRA Study Id SRP235102  (Link to NCBI )
Study Title Thiobacillus sp. JGI_KA33_E04_024 Genome sequencing
Study Abstract
  
SRA Study Id SRP234299  (Link to NCBI )
Study Title Thermoleophilia bacterium strain:JGI_SA12_G06_036 Genome sequencing
Study Abstract
  
SRA Study Id SRP234256  (Link to NCBI )
Study Title Hyphomonas sp. JGI_KA33_H02_002 Genome sequencing
Study Abstract
  
SRA Study Id SRP131543  (Link to NCBI )
Study Title Groundwater microbial communities from the Olkiluoto Island deep subsurface site, Finland - KR46_S_MetaG metagenome
Study Abstract
  
SRA Study Id SRP131544  (Link to NCBI )
Study Title Groundwater microbial communities from the Olkiluoto Island deep subsurface site, Finland - KR46_M_MetaG metagenome
Study Abstract
  
SRA Study Id SRP235067  (Link to NCBI )
Study Title Candidatus Dependentiae bacterium strain:JGI_SA12_E01_007 Genome sequencing
Study Abstract
  
SRA Study Id SRP234253  (Link to NCBI )
Study Title Thiobacillus sp. JGI_KA33_F07_053 Genome sequencing
Study Abstract
  
SRA Study Id SRP235100  (Link to NCBI )
Study Title Deltaproteobacteria bacterium strain:JGI_KA33_D08_058 Genome sequencing
Study Abstract
  
SRA Study Id SRP235101  (Link to NCBI )
Study Title Rhodobacteraceae bacterium strain:JGI_KA33_H11_081 Genome sequencing
Study Abstract
  
SRA Study Id SRP234291  (Link to NCBI )
Study Title Acholeplasma sp. JGI_SA12_E04_024 Genome sequencing
Study Abstract
  
SRA Study Id SRP234250  (Link to NCBI )
Study Title Candidatus Omnitrophica bacterium strain:JGI_KA33_B06_046 Genome sequencing
Study Abstract
  
SRA Study Id SRP131508  (Link to NCBI )
Study Title Groundwater microbial communities from the Aspo Hard Rock Laboratory (HRL) deep subsurface site, Sweden - OS_PW_MetaG metagenome
Study Abstract
  
SRA Study Id SRP139230  (Link to NCBI )
Study Title Groundwater microbial communities from the Olkiluoto Island deep subsurface site, Finland - KR11_0.1 MetaG metagenome
Study Abstract
  
SRA Study Id SRP234248  (Link to NCBI )
Study Title Candidatus Omnitrophica bacterium strain:JGI_KA33_E08_056 Genome sequencing
Study Abstract
  
SRA Study Id SRP234249  (Link to NCBI )
Study Title Erythrobacter sp. JGI_KA33_H01_001 Genome sequencing
Study Abstract
  
SRA Study Id SRP234244  (Link to NCBI )
Study Title Aequorivita sp. JGI_SA12_F02_006 Genome sequencing
Study Abstract
  
SRA Study Id SRP234245  (Link to NCBI )
Study Title Chromatiales bacterium strain:JGI_KA33_G08_052 Genome sequencing
Study Abstract
  
SRA Study Id SRP234247  (Link to NCBI )
Study Title Elusimicrobia bacterium strain:JGI_KA33_H07_049 Genome sequencing
Study Abstract
  
SRA Study Id SRP235098  (Link to NCBI )
Study Title Chromatiales bacterium strain:JGI_KA33_F01_005 Genome sequencing
Study Abstract
  
SRA Study Id SRP234284  (Link to NCBI )
Study Title Mollicutes bacterium strain:JGI_SA12_C03_027 Genome sequencing
Study Abstract
  
SRA Study Id SRP234285  (Link to NCBI )
Study Title Brachyspiraceae bacterium strain:JGI_SA12_G04_020 Genome sequencing
Study Abstract
  
SRA Study Id SRP235099  (Link to NCBI )
Study Title Desulfomicrobium sp. JGI_KA33_A08_064 Genome sequencing
Study Abstract
  
SRA Study Id SRP234286  (Link to NCBI )
Study Title Sinobacteraceae bacterium strain:JGI_SA12_F07_053 Genome sequencing
Study Abstract
  
SRA Study Id SRP234242  (Link to NCBI )
Study Title Myxococcales bacterium strain:JGI_SA12_C02_012 Genome sequencing
Study Abstract
  
SRA Study Id SRP234243  (Link to NCBI )
Study Title Parvibaculum sp. JGI_KA33_D01_009 Genome sequencing
Study Abstract
  
SRA Study Id SRP235094  (Link to NCBI )
Study Title Elusimicrobia bacterium strain:JGI_KA33_G01_003 Genome sequencing
Study Abstract
  
SRA Study Id SRP235095  (Link to NCBI )
Study Title Hyphomonas sp. JGI_KA33_B01_013 Genome sequencing
Study Abstract
  
SRA Study Id SRP234281  (Link to NCBI )
Study Title Myxococcales bacterium strain:JGI_SA12_C07_059 Genome sequencing
Study Abstract
  
SRA Study Id SRP234282  (Link to NCBI )
Study Title Candidatus Latescibacteria bacterium strain:JGI_SA12_A10_080 Genome sequencing
Study Abstract
  
SRA Study Id SRP235096  (Link to NCBI )
Study Title Candidatus Omnitrophica bacterium strain:JGI_KA33_D06_042 Genome sequencing
Study Abstract
  
SRA Study Id SRP234283  (Link to NCBI )
Study Title Dehalococcoidia bacterium strain:JGI_SA12_E06_040 Genome sequencing
Study Abstract
  
SRA Study Id SRP235097  (Link to NCBI )
Study Title Candidatus Omnitrophica bacterium strain:JGI_KA33_B02_014 Genome sequencing
Study Abstract
  
SRA Study Id SRP235093  (Link to NCBI )
Study Title Candidatus Omnitrophica bacterium strain:JGI_KA33_H05_033 Genome sequencing
Study Abstract
  
SRA Study Id SRP131513  (Link to NCBI )
Study Title Groundwater microbial communities from the Olkiluoto Island deep subsurface site, Finland - KR11_S1_MetaG metagenome
Study Abstract
  
SRA Study Id SRP234956  (Link to NCBI )
Study Title Ignavibacteria bacterium strain:JGI_KA33_F04_022 Genome sequencing
Study Abstract
  
SRA Study Id SRP234237  (Link to NCBI )
Study Title Mollicutes bacterium strain:JGI_SA12_B02_014 Genome sequencing
Study Abstract
  
SRA Study Id SRP234952  (Link to NCBI )
Study Title Thiobacillus sp. JGI_KA33_G04_020 Genome sequencing
Study Abstract
  
SRA Study Id SRP234953  (Link to NCBI )
Study Title Desulfobacteraceae bacterium strain:JGI_KA33_D04_026 Genome sequencing
Study Abstract
  
SRA Study Id SRP234239  (Link to NCBI )
Study Title Acholeplasma sp. JGI_SA12_B09_077 Genome sequencing
Study Abstract
  
SRA Study Id SRP234954  (Link to NCBI )
Study Title Flavobacteriaceae bacterium strain:JGI_KA33_H04_018 Genome sequencing
Study Abstract
  
SRA Study Id SRP234955  (Link to NCBI )
Study Title Desulfovibrio sp. JGI_KA33_F03_021 Genome sequencing
Study Abstract
  
SRA Study Id SRP234234  (Link to NCBI )
Study Title Candidatus Omnitrophica bacterium strain:JGI_SA12_H09_065 Genome sequencing
Study Abstract
  
SRA Study Id SRP234235  (Link to NCBI )
Study Title Brachyspiraceae bacterium strain:JGI_SA12_F06_038 Genome sequencing
Study Abstract
  
SRA Study Id SRP234236  (Link to NCBI )
Study Title Candidatus Omnitrophica bacterium strain:JGI_SA12_C09_075 Genome sequencing
Study Abstract
  
SRA Study Id SRP234273  (Link to NCBI )
Study Title Ignavibacteriales bacterium strain:JGI_SA12_B06_046 Genome sequencing
Study Abstract
  
SRA Study Id SRP235043  (Link to NCBI )
Study Title Desulfobulbaceae bacterium strain:JGI_KA33_E07_055 Genome sequencing
Study Abstract
  
SRA Study Id SRP235044  (Link to NCBI )
Study Title Acholeplasma sp. JGI_SA12_B04_030 Genome sequencing
Study Abstract
  
SRA Study Id SRP235045  (Link to NCBI )
Study Title Candidatus Omnitrophica bacterium strain:JGI_SA12_C04_028 Genome sequencing
Study Abstract
  
SRA Study Id SRP235046  (Link to NCBI )
Study Title Ignavibacteriales bacterium strain:JGI_SA12_C08_060 Genome sequencing
Study Abstract
  
SRA Study Id SRP131484  (Link to NCBI )
Study Title Groundwater microbial communities from the Aspo Hard Rock Laboratory (HRL) deep subsurface site, Sweden - MM_PC_MetaG metagenome
Study Abstract
  
SRA Study Id SRP234270  (Link to NCBI )
Study Title Mollicutes bacterium strain:JGI_SA12_H11_081 Genome sequencing
Study Abstract
  
SRA Study Id SRP235040  (Link to NCBI )
Study Title Myxococcales bacterium strain:JGI_SA12_F11_085 Genome sequencing
Study Abstract
  
SRA Study Id SRP234271  (Link to NCBI )
Study Title Candidatus Omnitrophica bacterium strain:JGI_SA12_H05_033 Genome sequencing
Study Abstract
  
SRA Study Id SRP234272  (Link to NCBI )
Study Title Elusimicrobia bacterium strain:JGI_SA12_F05_037 Genome sequencing
Study Abstract
  
SRA Study Id SRP131483  (Link to NCBI )
Study Title Groundwater microbial communities from the Aspo Hard Rock Laboratory (HRL) deep subsurface site, Sweden - MM_PW_MetaG metagenome
Study Abstract
  
SRA Study Id SRP235080  (Link to NCBI )
Study Title Candidatus Latescibacteria bacterium strain:JGI_SA12_D02_010 Genome sequencing
Study Abstract
  
SRA Study Id SRP235081  (Link to NCBI )
Study Title Mollicutes bacterium strain:JGI_SA12_D11_089 Genome sequencing
Study Abstract
  
SRA Study Id SRP235082  (Link to NCBI )
Study Title Pedomicrobium sp. JGI_KA33_B03_029 Genome sequencing
Study Abstract
  
SRA Study Id SRP235036  (Link to NCBI )
Study Title Brachyspiraceae bacterium strain:JGI_SA12_H10_066 Genome sequencing
Study Abstract
  
SRA Study Id SRP234267  (Link to NCBI )
Study Title Candidatus Omnitrophica bacterium strain:JGI_SA12_B12_094 Genome sequencing
Study Abstract
  
SRA Study Id SRP234300  (Link to NCBI )
Study Title Anaerolineae bacterium strain:JGI_SA12_H03_017 Genome sequencing
Study Abstract
  
SRA Study Id SRP235037  (Link to NCBI )
Study Title Mollicutes bacterium strain:JGI_SA12_A04_032 Genome sequencing
Study Abstract
  
SRA Study Id SRP234268  (Link to NCBI )
Study Title Candidatus Omnitrophica bacterium strain:JGI_SA12_F08_054 Genome sequencing
Study Abstract
  
SRA Study Id SRP235038  (Link to NCBI )
Study Title Dehalococcoidaceae bacterium strain:JGI_SA12_B11_093 Genome sequencing
Study Abstract
  
SRA Study Id SRP234269  (Link to NCBI )
Study Title Chlorobi bacterium strain:JGI_SA12_B05_045 Genome sequencing
Study Abstract
  
SRA Study Id SRP235039  (Link to NCBI )
Study Title Desulfobulbaceae bacterium strain:JGI_SA12_B07_061 Genome sequencing
Study Abstract
  
SRA Study Id SRP235032  (Link to NCBI )
Study Title Candidatus Omnitrophica bacterium strain:JGI_KA33_H03_017 Genome sequencing
Study Abstract
  
SRA Study Id SRP234263  (Link to NCBI )
Study Title Desulfobulbaceae bacterium strain:JGI_KA33_A02_016 Genome sequencing
Study Abstract
  
SRA Study Id SRP235033  (Link to NCBI )
Study Title Bacteroidales bacterium strain:JGI_SA12_A05_047 Genome sequencing
Study Abstract
  
SRA Study Id SRP131533  (Link to NCBI )
Study Title Groundwater microbial communities from the Olkiluoto Island deep subsurface site, Finland - KR13_J_MetaG metagenome
Study Abstract
  
SRA Study Id SRP234264  (Link to NCBI )
Study Title Candidatus Aminicenantes bacterium strain:JGI_SA12_B08_062 Genome sequencing
Study Abstract
  
SRA Study Id SRP235034  (Link to NCBI )
Study Title Candidatus Omnitrophica bacterium strain:JGI_KA33_C08_060 Genome sequencing
Study Abstract
  
SRA Study Id SRP131530  (Link to NCBI )
Study Title Groundwater microbial communities from the Olkiluoto Island deep subsurface site, Finland - KR11_S2_MetaG metagenome
Study Abstract
  
SRA Study Id SRP235079  (Link to NCBI )
Study Title Desulfobacteraceae bacterium strain:JGI_SA12_H12_082 Genome sequencing
Study Abstract
  
SRA Study Id SRP235035  (Link to NCBI )
Study Title Candidatus Omnitrophica bacterium strain:JGI_SA12_F09_069 Genome sequencing
Study Abstract
  
SRA Study Id SRP131495  (Link to NCBI )
Study Title Groundwater microbial communities from the Aspo Hard Rock Laboratory (HRL) deep subsurface site, Sweden - OS_PC_MetaG metagenome
Study Abstract
  
SRA Study Id SRP234260  (Link to NCBI )
Study Title Anaerolineae bacterium strain:JGI_KA33_D07_057 Genome sequencing
Study Abstract
  
SRA Study Id SRP235030  (Link to NCBI )
Study Title Candidatus Omnitrophica bacterium strain:JGI_SA12_H08_050 Genome sequencing
Study Abstract
  
SRA Study Id SRP235031  (Link to NCBI )
Study Title Phyllobacteriaceae bacterium strain:JGI_KA33_F08_054 Genome sequencing
Study Abstract
  
SRA Study Id SRP234261  (Link to NCBI )
Study Title Ignavibacteriales bacterium strain:JGI_KA33_H08_050 Genome sequencing
Study Abstract
  
SRA Study Id SRP131537  (Link to NCBI )
Study Title Groundwater microbial communities from the Olkiluoto Island deep subsurface site, Finland - KR13_S2_MetaG metagenome
Study Abstract
  
SRA Study Id SRP131534  (Link to NCBI )
Study Title Groundwater microbial communities from the Olkiluoto Island deep subsurface site, Finland - KR13_S1_MetaG metagenome
Study Abstract
  
Legacy ER Study ID
Legacy GOLD ID
Added By JGI automated process on 2017-02-05
Last Modified By JGI automated process on 2019-09-06
PI Mark Dopson
Description The deep biosphere is expected to harbor untapped (or poorly characterized) microbial diversity. Accessing this diversity and capturing the genetic potential of these populations can ultimately lead to significant biotechnological innovation.
Relevance
Study Information Link
Study Information Visibility Public
Metagenomic Study Yes
Publication
Is GEBA
Is HMP
ECOSYSTEM CLASSIFICATION
Ecosystem Environmental
Ecosystem Category Aquatic
Ecosystem Type Freshwater
Ecosystem Subtype Groundwater
Specific Ecosystem Unclassified
STUDY COMPOSITION
Number of Biosamples 354
Number of Organisms 200
Number of Seq Projects 554
Number of Analysis Projects 354
Number of Related Studies 0

 

 

  You are going to add the following user to ALL Sequencing Projects, Biosamples and Analysis Projects that
sit under this study (a cascading permission update).

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to all Sequencing Projects,
Biosamples and Analysis Projects under this study.

 

Contact Name/Email:

Do you want to continue?