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Study

Study Name: Methane metabolizing microbial communities from different methane-rich environments from various locations

Projects

Biosamples

Organisms

Biosamples: 434 Seq. Projects: 434
STUDY INFORMATION
GOLD Study ID Gs0127566
Study Name Methane metabolizing microbial communities from different methane-rich environments from various locations
Other Names
NCBI Umbrella Bioproject Name
NCBI Umbrella Bioproject ID
SRA Studies
SRA Study Id SRP155631  (Link to NCBI )
Study Title Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_21 metagenome
Study Abstract
  
SRA Study Id SRP155632  (Link to NCBI )
Study Title Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_27 metagenome
Study Abstract
  
SRA Study Id SRP183824  (Link to NCBI )
Study Title Freshwater microbial communities from Lake Matano, South Sulawesi, Indonesia - Watercolumn_Matano_2014_100_MG metagenome
Study Abstract
  
SRA Study Id SRP155633  (Link to NCBI )
Study Title Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_23 metagenome
Study Abstract
  
SRA Study Id SRP178631  (Link to NCBI )
Study Title Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_27 metagenome
Study Abstract
  
SRA Study Id SRP155634  (Link to NCBI )
Study Title Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_1 metagenome
Study Abstract
  
SRA Study Id SRP178630  (Link to NCBI )
Study Title Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_10_MG metagenome
Study Abstract
  
SRA Study Id SRP178634  (Link to NCBI )
Study Title Seawater microbial communities from Amundsen Gulf, Northwest Territories, Canada - Cases_109_6 metagenome
Study Abstract
  
SRA Study Id SRP155630  (Link to NCBI )
Study Title Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_5 metagenome
Study Abstract
  
SRA Study Id SRP178637  (Link to NCBI )
Study Title Sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Sediment_Towuti_2014_0_MG metagenome
Study Abstract
  
SRA Study Id SRP247852  (Link to NCBI )
Study Title Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo – kab_022012_12m metagenome
Study Abstract
  
SRA Study Id SRP178639  (Link to NCBI )
Study Title Sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Sediment_Towuti_2014_1_MG metagenome
Study Abstract
  
SRA Study Id SRP247851  (Link to NCBI )
Study Title Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo – kab_022012_11.5m metagenome
Study Abstract
  
SRA Study Id SRP178638  (Link to NCBI )
Study Title Sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Sediment_Towuti_2014_0.5_MG metagenome
Study Abstract
  
SRA Study Id SRP247858  (Link to NCBI )
Study Title Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo – kab_092012_9.5m metagenome
Study Abstract
  
SRA Study Id SRP155637  (Link to NCBI )
Study Title Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_2 metagenome
Study Abstract
  
SRA Study Id SRP247860  (Link to NCBI )
Study Title Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo – kab_092012_10m metagenome
Study Abstract
  
SRA Study Id SRP178640  (Link to NCBI )
Study Title Seawater microbial communities from Amundsen Gulf, Northwest Territories, Canada - Cases_109_9 metagenome
Study Abstract
  
SRA Study Id SRP155621  (Link to NCBI )
Study Title Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_oxic_7_MG metagenome
Study Abstract
  
SRA Study Id SRP155622  (Link to NCBI )
Study Title Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_oxic_13_MG metagenome
Study Abstract
  
SRA Study Id SRP155623  (Link to NCBI )
Study Title Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_oxic_11_MG metagenome
Study Abstract
  
SRA Study Id SRP155980  (Link to NCBI )
Study Title Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_150_MG metagenome
Study Abstract
  
SRA Study Id SRP155982  (Link to NCBI )
Study Title Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_200_MG metagenome
Study Abstract
  
SRA Study Id SRP155629  (Link to NCBI )
Study Title Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_9 metagenome
Study Abstract
  
SRA Study Id SRP155625  (Link to NCBI )
Study Title Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_1_MG metagenome
Study Abstract
  
SRA Study Id SRP155626  (Link to NCBI )
Study Title Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_2_MG metagenome
Study Abstract
  
SRA Study Id SRP155627  (Link to NCBI )
Study Title Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_4_MG metagenome
Study Abstract
  
SRA Study Id SRP155690  (Link to NCBI )
Study Title Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MG metagenome
Study Abstract
  
SRA Study Id SRP155692  (Link to NCBI )
Study Title Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_100_MG metagenome
Study Abstract
  
SRA Study Id SRP179104  (Link to NCBI )
Study Title Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_12m metagenome
Study Abstract
  
SRA Study Id SRP155698  (Link to NCBI )
Study Title Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_120_MG metagenome
Study Abstract
  
SRA Study Id SRP155699  (Link to NCBI )
Study Title Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_135_MG metagenome
Study Abstract
  
SRA Study Id SRP130158  (Link to NCBI )
Study Title Sediment microbial communities from Lake Kivu, Rwanda - Sediment s2_kivu2a2 metagenome
Study Abstract
  
SRA Study Id SRP179069  (Link to NCBI )
Study Title Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - MeOH1_35cm_T3_179 metagenome
Study Abstract
  
SRA Study Id SRP179102  (Link to NCBI )
Study Title Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_8m metagenome
Study Abstract
  
SRA Study Id SRP155975  (Link to NCBI )
Study Title Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_135_MG metagenome
Study Abstract
  
SRA Study Id SRP179105  (Link to NCBI )
Study Title Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_13.5m metagenome
Study Abstract
  
SRA Study Id SRP247876  (Link to NCBI )
Study Title Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo – kab_092012_10.3m metagenome
Study Abstract
  
SRA Study Id SRP155617  (Link to NCBI )
Study Title Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_oxic_2_MG metagenome
Study Abstract
  
SRA Study Id SRP155618  (Link to NCBI )
Study Title Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_oxic_5_MG metagenome
Study Abstract
  
SRA Study Id SRP155619  (Link to NCBI )
Study Title Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_oxic_3_MG metagenome
Study Abstract
  
SRA Study Id SRP179109  (Link to NCBI )
Study Title Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_14.5m metagenome
Study Abstract
  
SRA Study Id SRP130159  (Link to NCBI )
Study Title Sediment microbial communities from Lake Kivu, Rwanda - Sediment s1_kivu2a2 metagenome
Study Abstract
  
SRA Study Id SRP155735  (Link to NCBI )
Study Title Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_10_MG metagenome
Study Abstract
  
SRA Study Id SRP155736  (Link to NCBI )
Study Title Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_100_MG metagenome
Study Abstract
  
SRA Study Id SRP247877  (Link to NCBI )
Study Title Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo – kab_092012_11.1m metagenome
Study Abstract
  
SRA Study Id SRP155616  (Link to NCBI )
Study Title Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_oxic_1_MG metagenome
Study Abstract
  
SRA Study Id SRP179073  (Link to NCBI )
Study Title Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - plant10 metagenome
Study Abstract
  
SRA Study Id SRP130160  (Link to NCBI )
Study Title Sediment microbial communities from Lake Kivu, Rwanda - Sediment site 10cm metagenome
Study Abstract
  
SRA Study Id SRP179114  (Link to NCBI )
Study Title Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_16m metagenome
Study Abstract
  
SRA Study Id SRP155686  (Link to NCBI )
Study Title Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_200_MG metagenome
Study Abstract
  
SRA Study Id SRP179115  (Link to NCBI )
Study Title Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_15m metagenome
Study Abstract
  
SRA Study Id SRP130163  (Link to NCBI )
Study Title Sediment microbial communities from Lake Kivu, Rwanda - Sediment site 48cm metagenome
Study Abstract
  
SRA Study Id SRP179118  (Link to NCBI )
Study Title Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch201714.5m_1 metagenome
Study Abstract
  
SRA Study Id SRP130162  (Link to NCBI )
Study Title Sediment microbial communities from Lake Kivu, Rwanda - Sediment site 69cm metagenome
Study Abstract
  
SRA Study Id SRP155685  (Link to NCBI )
Study Title Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_150_MG metagenome
Study Abstract
  
SRA Study Id SRP179117  (Link to NCBI )
Study Title Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2017_8m metagenome
Study Abstract
  
SRA Study Id SRP179080  (Link to NCBI )
Study Title Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - plant12 metagenome
Study Abstract
  
SRA Study Id SRP179084  (Link to NCBI )
Study Title Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - plant16 metagenome
Study Abstract
  
SRA Study Id SRP179085  (Link to NCBI )
Study Title Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - plant18 metagenome
Study Abstract
  
SRA Study Id SRP155670  (Link to NCBI )
Study Title Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_10_MG metagenome
Study Abstract
  
SRA Study Id SRP179121  (Link to NCBI )
Study Title Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_17m metagenome
Study Abstract
  
SRA Study Id SRP179088  (Link to NCBI )
Study Title Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - plant20 metagenome
Study Abstract
  
SRA Study Id SRP179086  (Link to NCBI )
Study Title Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - plant14 metagenome
Study Abstract
  
SRA Study Id SRP179120  (Link to NCBI )
Study Title Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_14m metagenome
Study Abstract
  
SRA Study Id SRP155710  (Link to NCBI )
Study Title Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_150_MG metagenome
Study Abstract
  
SRA Study Id SRP155677  (Link to NCBI )
Study Title Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_120_MG metagenome
Study Abstract
  
SRA Study Id SRP155678  (Link to NCBI )
Study Title Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_135_MG metagenome
Study Abstract
  
SRA Study Id SRP155711  (Link to NCBI )
Study Title Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_200_MG metagenome
Study Abstract
  
SRA Study Id SRP184159  (Link to NCBI )
Study Title Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH5_T0_E5 metagenome
Study Abstract
  
SRA Study Id SRP155792  (Link to NCBI )
Study Title Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_200_MG metagenome
Study Abstract
  
SRA Study Id SRP155671  (Link to NCBI )
Study Title Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_100_MG metagenome
Study Abstract
  
SRA Study Id SRP155794  (Link to NCBI )
Study Title Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_10_MG metagenome
Study Abstract
  
SRA Study Id SRP155795  (Link to NCBI )
Study Title Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_100_MG metagenome
Study Abstract
  
SRA Study Id SRP148179  (Link to NCBI )
Study Title Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_2 metagenome
Study Abstract
  
SRA Study Id SRP184155  (Link to NCBI )
Study Title Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH4_T0_E4 metagenome
Study Abstract
  
SRA Study Id SRP148178  (Link to NCBI )
Study Title Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_1 metagenome
Study Abstract
  
SRA Study Id SRP184157  (Link to NCBI )
Study Title Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH1_T0_E1 metagenome
Study Abstract
  
SRA Study Id SRP148175  (Link to NCBI )
Study Title Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_5 metagenome
Study Abstract
  
SRA Study Id SRP148172  (Link to NCBI )
Study Title Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_9 metagenome
Study Abstract
  
SRA Study Id SRP179092  (Link to NCBI )
Study Title Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_1m metagenome
Study Abstract
  
SRA Study Id SRP179094  (Link to NCBI )
Study Title Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - plant24 metagenome
Study Abstract
  
SRA Study Id SRP179097  (Link to NCBI )
Study Title Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_4m metagenome
Study Abstract
  
SRA Study Id SRP155666  (Link to NCBI )
Study Title Freshwater microbial communities from Lake Matano, South Sulawesi, Indonesia - Watercolumn_Matano_2014_110_MG metagenome
Study Abstract
  
SRA Study Id SRP155667  (Link to NCBI )
Study Title Freshwater microbial communities from Lake Matano, South Sulawesi, Indonesia - Watercolumn_Matano_2014_112_MG metagenome
Study Abstract
  
SRA Study Id SRP155660  (Link to NCBI )
Study Title Seawater microbial communities from Amundsen Gulf, Northwest Territories, Canada - Cases_109_1 metagenome
Study Abstract
  
SRA Study Id SRP184169  (Link to NCBI )
Study Title Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_19m metagenome
Study Abstract
  
SRA Study Id SRP155661  (Link to NCBI )
Study Title Freshwater microbial communities from Lake Matano, South Sulawesi, Indonesia - Watercolumn_Matano_2014_102_MG metagenome
Study Abstract
  
SRA Study Id SRP155662  (Link to NCBI )
Study Title Freshwater microbial communities from Lake Matano, South Sulawesi, Indonesia - Watercolumn_Matano_2014_107_MG metagenome
Study Abstract
  
SRA Study Id SRP184166  (Link to NCBI )
Study Title Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - plant22 metagenome
Study Abstract
  
SRA Study Id SRP155789  (Link to NCBI )
Study Title Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_150_MG metagenome
Study Abstract
  
SRA Study Id SRP155668  (Link to NCBI )
Study Title Freshwater microbial communities from Lake Towuti, South Sulawesi, Indonesia - Watercolumn_Towuti2014_125_MG metagenome
Study Abstract
  
SRA Study Id SRP184161  (Link to NCBI )
Study Title Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH5_35cm_T3_129 metagenome
Study Abstract
  
SRA Study Id SRP155669  (Link to NCBI )
Study Title Freshwater microbial communities from Lake Towuti, South Sulawesi, Indonesia - Watercolumn_Towuti2014_140_MG metagenome
Study Abstract
  
SRA Study Id SRP194932  (Link to NCBI )
Study Title Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - MeOH1_35cm_T4_195 metagenome
Study Abstract
  
SRA Study Id SRP184170  (Link to NCBI )
Study Title Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_18m metagenome
Study Abstract
  
SRA Study Id SRP155775  (Link to NCBI )
Study Title Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_120_MG metagenome
Study Abstract
  
SRA Study Id SRP247838  (Link to NCBI )
Study Title Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo – kab_022012_11.25m metagenome
Study Abstract
  
SRA Study Id SRP155776  (Link to NCBI )
Study Title Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_135_MG metagenome
Study Abstract
  
SRA Study Id SRP247836  (Link to NCBI )
Study Title Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo – kab_022012_11m metagenome
Study Abstract
  
SRA Study Id SRP155658  (Link to NCBI )
Study Title Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_3 metagenome
Study Abstract
  
SRA Study Id SRP247833  (Link to NCBI )
Study Title Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo – kab_022012_10m metagenome
Study Abstract
  
SRA Study Id SRP178622  (Link to NCBI )
Study Title Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_22 metagenome
Study Abstract
  
SRA Study Id SRP178624  (Link to NCBI )
Study Title Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_21 metagenome
Study Abstract
  
SRA Study Id SRP178623  (Link to NCBI )
Study Title Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_12_MG metagenome
Study Abstract
  
SRA Study Id SRP178628  (Link to NCBI )
Study Title Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_6_MG metagenome
Study Abstract
  
SRA Study Id SRP178627  (Link to NCBI )
Study Title Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_23 metagenome
Study Abstract
  
SRA Study Id SRP178629  (Link to NCBI )
Study Title Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_3 metagenome
Study Abstract
  
SRA Study Id SRP155801  (Link to NCBI )
Study Title Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_120_MG metagenome
Study Abstract
  
Legacy ER Study ID
Legacy GOLD ID
Added By JGI automated process on 2017-02-05
Last Modified By JGI automated process on 2019-09-06
PI Sean Crowe
Description The methanome comprises genomic information distributed across organisms that either produce or consume methane as part of their metabolic repertoire. The methanome thus encodes information that regulates methane cycling in natural and engineered ecosystems both impacting climate and the efficacy of industrial process. We have chosen a suite of sample sites that together capture key underexplored niches in the methanosphere. Data arising from this study will provide an information reservoir for researchers and educators interested in exploring diversity and metabolic complexity of natural and engineered microbial communities. Information on ecology and niche adaptation of methanogens and methanotrophs will provide key information critical to incorporating microbial traits into predictive models of global methane budgets.
Relevance
Study Information Link
Study Information Visibility Public
Metagenomic Study Yes
Publication
Is GEBA
Is HMP
ECOSYSTEM CLASSIFICATION
Ecosystem Environmental
Ecosystem Category Aquatic
Ecosystem Type Freshwater
Ecosystem Subtype Lake
Specific Ecosystem Unclassified
STUDY COMPOSITION
Number of Biosamples 434
Number of Organisms 0
Number of Seq Projects 434
Number of Analysis Projects 432
Number of Related Studies 0

 

 

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