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Study

Study Name: Synthetic bacterial communities of pure cultures isolated from sediment of Lake Washington, USA

Projects

Biosamples

Organisms

Biosamples: 12 Seq. Projects: 84
STUDY INFORMATION
GOLD Study ID Gs0127379
Study Name Synthetic bacterial communities of pure cultures isolated from sediment of Lake Washington, USA
Other Names
NCBI Umbrella Bioproject Name
NCBI Umbrella Bioproject ID
SRA Studies
SRA Study Id SRP225300  (Link to NCBI )
Study Title Janthinobacterium sp. 78 transcriptome - Chisto_RNA_28
Study Abstract
  
SRA Study Id SRP112869  (Link to NCBI )
Study Title Synthetic bacterial communities of pure cultures from sediment of Lake Washington, USA, under low oxygen conditions - MT methane_oxidizing 4strains_1hour-b metatranscriptome
Study Abstract
  
SRA Study Id SRP134778  (Link to NCBI )
Study Title Flavobacterium sp. 9 strain:9 Genome sequencing
Study Abstract
  
SRA Study Id SRP134777  (Link to NCBI )
Study Title Comamonas sp. 26 strain:26 Genome sequencing
Study Abstract
  
SRA Study Id SRP134775  (Link to NCBI )
Study Title Flavobacterium sp. 2 strain:2 Genome sequencing
Study Abstract
  
SRA Study Id SRP112868  (Link to NCBI )
Study Title Synthetic bacterial communities of pure cultures from sediment of Lake Washington, USA, under low oxygen conditions - MT methane_oxidizing 4strains_48hour-b metatranscriptome
Study Abstract
  
SRA Study Id SRP225309  (Link to NCBI )
Study Title Flavobacterium sp. 102 transcriptome - Chisto_RNA_36
Study Abstract
  
SRA Study Id SRP225307  (Link to NCBI )
Study Title Acidovorax sp. 94 transcriptome - Chisto_RNA_32
Study Abstract
  
SRA Study Id SRP139227  (Link to NCBI )
Study Title Acidovorax sp. 93 strain:93 Genome sequencing
Study Abstract
  
SRA Study Id SRP225308  (Link to NCBI )
Study Title Acidovorax sp. 99 transcriptome - Chisto_RNA_34
Study Abstract
  
SRA Study Id SRP139229  (Link to NCBI )
Study Title Flavobacterium sp. 90 strain:90 Genome sequencing
Study Abstract
  
SRA Study Id SRP225306  (Link to NCBI )
Study Title Flavobacterium sp. 103 transcriptome - Chisto_RNA_37
Study Abstract
  
SRA Study Id SRP139228  (Link to NCBI )
Study Title Janthinobacterium sp. 77 strain:77 Genome sequencing
Study Abstract
  
SRA Study Id SRP225303  (Link to NCBI )
Study Title Janthinobacterium sp. 67 transcriptome - Chisto_RNA_23
Study Abstract
  
SRA Study Id SRP225304  (Link to NCBI )
Study Title Flavobacterium sp. 81 transcriptome - Chisto_RNA_29
Study Abstract
  
SRA Study Id SRP225301  (Link to NCBI )
Study Title Acidovorax sp. 69 transcriptome - Chisto_RNA_24
Study Abstract
  
SRA Study Id SRP225302  (Link to NCBI )
Study Title Janthinobacterium sp. 75 transcriptome - Chisto_RNA_25
Study Abstract
  
SRA Study Id SRP134779  (Link to NCBI )
Study Title Flavobacterium sp. 5 strain:5 Genome sequencing
Study Abstract
  
SRA Study Id SRP225299  (Link to NCBI )
Study Title Acidovorax sp. 62 transcriptome - Chisto_RNA_21
Study Abstract
  
SRA Study Id SRP225297  (Link to NCBI )
Study Title Acidovorax sp. 56 transcriptome - Chisto_RNA_17
Study Abstract
  
SRA Study Id SRP139232  (Link to NCBI )
Study Title Janthinobacterium sp. 78 strain:78 Genome sequencing
Study Abstract
  
SRA Study Id SRP225298  (Link to NCBI )
Study Title Janthinobacterium sp. 61 transcriptome - Chisto_RNA_20
Study Abstract
  
SRA Study Id SRP139231  (Link to NCBI )
Study Title Acidovorax sp. 94 strain:94 Genome sequencing
Study Abstract
  
SRA Study Id SRP225295  (Link to NCBI )
Study Title Delftia sp. 60 transcriptome - Chisto_RNA_19
Study Abstract
  
SRA Study Id SRP139234  (Link to NCBI )
Study Title Acidovorax sp. 99 strain:99 Genome sequencing
Study Abstract
  
SRA Study Id SRP112890  (Link to NCBI )
Study Title Synthetic bacterial communities of pure cultures from sediment of Lake Washington, USA, under high oxygen condition - MT methane_oxidizing 14strains_48hour-b metatranscriptome
Study Abstract
  
SRA Study Id SRP225296  (Link to NCBI )
Study Title Janthinobacterium sp. 64 transcriptome - Chisto_RNA_22
Study Abstract
  
SRA Study Id SRP139233  (Link to NCBI )
Study Title Flavobacterium sp. 81 strain:81 Genome sequencing
Study Abstract
  
SRA Study Id SRP112891  (Link to NCBI )
Study Title Synthetic bacterial communities of pure cultures from sediment of Lake Washington, USA, under high oxygen condition - MT methane_oxidizing 14strains_48hour-a metatranscriptome
Study Abstract
  
SRA Study Id SRP225293  (Link to NCBI )
Study Title Chryseobacterium sp. 52 transcriptome - Chisto_RNA_15
Study Abstract
  
SRA Study Id SRP139236  (Link to NCBI )
Study Title Acidovorax sp. 104 Genome sequencing
Study Abstract
  
SRA Study Id SRP225294  (Link to NCBI )
Study Title Comamonas sp. 26 transcriptome - Chisto_RNA_11
Study Abstract
  
SRA Study Id SRP139235  (Link to NCBI )
Study Title Flavobacterium sp. 103 Genome sequencing
Study Abstract
  
SRA Study Id SRP225291  (Link to NCBI )
Study Title Janthinobacterium sp. 35 transcriptome - Chisto_RNA_14
Study Abstract
  
SRA Study Id SRP134781  (Link to NCBI )
Study Title Chryseobacterium sp. 7 strain:7 Genome sequencing
Study Abstract
  
SRA Study Id SRP225292  (Link to NCBI )
Study Title Variovorax sp. 54 transcriptome - Chisto_RNA_16
Study Abstract
  
SRA Study Id SRP134780  (Link to NCBI )
Study Title Burkholderiales bacterium 23 strain:23 Genome sequencing
Study Abstract
  
SRA Study Id SRP225290  (Link to NCBI )
Study Title Variovorax sp. 30 transcriptome - Chisto_RNA_13
Study Abstract
  
SRA Study Id SRP134789  (Link to NCBI )
Study Title Chryseobacterium sp. 52 strain:52 Genome sequencing
Study Abstract
  
SRA Study Id SRP134788  (Link to NCBI )
Study Title Acidovorax sp. 30 strain:30 Genome sequencing
Study Abstract
  
SRA Study Id SRP134787  (Link to NCBI )
Study Title Delftia sp. 60 strain:60 Genome sequencing
Study Abstract
  
SRA Study Id SRP134786  (Link to NCBI )
Study Title Variovorax sp. 54 strain:54 Genome sequencing
Study Abstract
  
SRA Study Id SRP134785  (Link to NCBI )
Study Title [Flavobacterium] sp. 29 strain:29 Genome sequencing
Study Abstract
  
SRA Study Id SRP134784  (Link to NCBI )
Study Title Acidovorax sp. 59 strain:59 Genome sequencing
Study Abstract
  
SRA Study Id SRP134783  (Link to NCBI )
Study Title Flavobacterium sp. 11 strain:11 Genome sequencing
Study Abstract
  
SRA Study Id SRP134782  (Link to NCBI )
Study Title Janthinobacterium sp. 13 strain:13 Genome sequencing
Study Abstract
  
SRA Study Id SRP139238  (Link to NCBI )
Study Title Flavobacterium sp. 102 Genome sequencing
Study Abstract
  
SRA Study Id SRP112892  (Link to NCBI )
Study Title Synthetic bacterial communities of pure cultures from sediment of Lake Washington, USA, under high oxygen condition - MT methane_oxidizing 14strains_24hour-b metatranscriptome
Study Abstract
  
SRA Study Id SRP139239  (Link to NCBI )
Study Title Acidovorax sp. 100 Genome sequencing
Study Abstract
  
SRA Study Id SRP224885  (Link to NCBI )
Study Title Flavobacterium sp. 1 transcriptome - Chisto_RNA_1
Study Abstract
  
SRA Study Id SRP224884  (Link to NCBI )
Study Title Flavobacterium sp. 2 transcriptome - Chisto_RNA_2
Study Abstract
  
SRA Study Id SRP139241  (Link to NCBI )
Study Title Acidovorax sp. 107 Genome sequencing
Study Abstract
  
SRA Study Id SRP139240  (Link to NCBI )
Study Title Acidovorax sp. 106 Genome sequencing
Study Abstract
  
SRA Study Id SRP225286  (Link to NCBI )
Study Title Janthinobacterium sp. 13 transcriptome - Chisto_RNA_9
Study Abstract
  
SRA Study Id SRP139243  (Link to NCBI )
Study Title Simplicispira sp. 110 Genome sequencing
Study Abstract
  
SRA Study Id SRP225287  (Link to NCBI )
Study Title Flavobacterium sp. 11 transcriptome - Chisto_RNA_8
Study Abstract
  
SRA Study Id SRP139242  (Link to NCBI )
Study Title Rhodanobacter sp. 113 Genome sequencing
Study Abstract
  
SRA Study Id SRP225284  (Link to NCBI )
Study Title Burkholderiales sp. 23 transcriptome - Chisto_RNA_10
Study Abstract
  
SRA Study Id SRP139245  (Link to NCBI )
Study Title Acidovorax sp. 108 Genome sequencing
Study Abstract
  
SRA Study Id SRP225285  (Link to NCBI )
Study Title Chryseobacterium sp. 7 transcriptome - Chisto_RNA_4
Study Abstract
  
SRA Study Id SRP139244  (Link to NCBI )
Study Title Flavobacterium sp. 109 Genome sequencing
Study Abstract
  
SRA Study Id SRP112880  (Link to NCBI )
Study Title Synthetic bacterial communities of pure cultures from sediment of Lake Washington, USA, under high oxygen condition - MT methane_oxidizing 14strains_1hour-b metatranscriptome
Study Abstract
  
SRA Study Id SRP139247  (Link to NCBI )
Study Title Bosea sp. 124 Genome sequencing
Study Abstract
  
SRA Study Id SRP225283  (Link to NCBI )
Study Title Flavobacterium sp. 9 transcriptome - Chisto_RNA_6
Study Abstract
  
SRA Study Id SRP139246  (Link to NCBI )
Study Title Flavobacterium sp. 120 Genome sequencing
Study Abstract
  
SRA Study Id SRP134792  (Link to NCBI )
Study Title Janthinobacterium sp. 64 strain:64 Genome sequencing
Study Abstract
  
SRA Study Id SRP134791  (Link to NCBI )
Study Title Janthinobacterium sp. 35 strain:35 Genome sequencing
Study Abstract
  
SRA Study Id SRP134790  (Link to NCBI )
Study Title Acidovorax sp. 56 strain:56 Genome sequencing
Study Abstract
  
SRA Study Id SRP134799  (Link to NCBI )
Study Title Janthinobacterium sp. 67 strain:67 Genome sequencing
Study Abstract
  
SRA Study Id SRP134798  (Link to NCBI )
Study Title Acidovorax sp. 69 strain:69 Genome sequencing
Study Abstract
  
SRA Study Id SRP112889  (Link to NCBI )
Study Title Synthetic bacterial communities of pure cultures from sediment of Lake Washington, USA, under high oxygen condition - MT methane_oxidizing 14strains_24hour-a metatranscriptome
Study Abstract
  
SRA Study Id SRP134797  (Link to NCBI )
Study Title Acidovorax sp. 62 strain:62 Genome sequencing
Study Abstract
  
SRA Study Id SRP129677  (Link to NCBI )
Study Title Synthetic bacterial communities of pure cultures from sediment of Lake Washington, USA, under low oxygen conditions - MT methane_oxidizing 4strains_48hour-a metatranscriptome
Study Abstract
  
SRA Study Id SRP139249  (Link to NCBI )
Study Title Simplicispira sp. 125 Genome sequencing
Study Abstract
  
SRA Study Id SRP225310  (Link to NCBI )
Study Title Acidovorax sp. 106 transcriptome - Chisto_RNA_39
Study Abstract
  
SRA Study Id SRP139212  (Link to NCBI )
Study Title Janthinobacterium sp. 75 strain:75 Genome sequencing
Study Abstract
  
SRA Study Id SRP139211  (Link to NCBI )
Study Title Acidovorax sp. 76 strain:76 Genome sequencing
Study Abstract
  
SRA Study Id SRP139250  (Link to NCBI )
Study Title Flavobacterium sp. 123 Genome sequencing
Study Abstract
  
SRA Study Id SRP134800  (Link to NCBI )
Study Title Janthinobacterium sp. 61 strain:61 Genome sequencing
Study Abstract
  
SRA Study Id SRP112872  (Link to NCBI )
Study Title Synthetic bacterial communities of pure cultures from sediment of Lake Washington, USA, under low oxygen conditions - MT methane_oxidizing 4strains_24hour-b metatranscriptome
Study Abstract
  
SRA Study Id SRP225316  (Link to NCBI )
Study Title Flavobacterium sp. 120 transcriptome - Chisto_RNA_45
Study Abstract
  
SRA Study Id SRP112870  (Link to NCBI )
Study Title Synthetic bacterial communities of pure cultures from sediment of Lake Washington, USA, under low oxygen conditions - MT methane_oxidizing 4strains_1hour-a metatranscriptome
Study Abstract
  
SRA Study Id SRP226647  (Link to NCBI )
Study Title Flavobacterium sp. 5 transcriptome - Chisto_RNA_3
Study Abstract
  
SRA Study Id SRP112871  (Link to NCBI )
Study Title Synthetic bacterial communities of pure cultures from sediment of Lake Washington, USA, under low oxygen conditions - MT methane_oxidizing 4strains_24hour-a metatranscriptome
Study Abstract
  
SRA Study Id SRP225314  (Link to NCBI )
Study Title Flavobacterium sp. 123 transcriptome - Chisto_RNA_46
Study Abstract
  
SRA Study Id SRP112876  (Link to NCBI )
Study Title Synthetic bacterial communities of pure cultures from sediment of Lake Washington, USA, under high oxygen condition - MT methane_oxidizing 14strains_1hour-a metatranscriptome
Study Abstract
  
SRA Study Id SRP225315  (Link to NCBI )
Study Title Bosea sp. 124 transcriptome - Chisto_RNA_47
Study Abstract
  
SRA Study Id SRP225312  (Link to NCBI )
Study Title Simplicispira sp. 110 transcriptome - Chisto_RNA_43
Study Abstract
  
SRA Study Id SRP225313  (Link to NCBI )
Study Title Acidovorax sp. 107 transcriptome - Chisto_RNA_40
Study Abstract
  
SRA Study Id SRP134768  (Link to NCBI )
Study Title Flavobacterium sp. 1 strain:1 Genome sequencing
Study Abstract
  
Legacy ER Study ID
Legacy GOLD ID
Added By JGI automated process on 2016-12-14
Last Modified By JGI automated process on 2019-09-06
PI Ludmila Chistoserdova
Description Because the interest for methane-oxidizing organisms (and methane-oxidizing communities) is huge, the goal of the study is to look for the missing links in methane oxidation and sequencing genomes and metatranscriptomes representing understudied and underestimated functional guilds that are parts of methane-oxidizing communities with a goal to detect methane-mitigating activities through detecting ‘community signatures’ and to provide a better resolution to understanding and ultimately modeling microbially mediated global and local cycles, including greenhouse gas cycles.
Relevance
Study Information Link
Study Information Visibility Public
Metagenomic Study Yes
Publication
Is GEBA
Is HMP
ECOSYSTEM CLASSIFICATION
Ecosystem Engineered
Ecosystem Category Modeled
Ecosystem Type Simulated communities (microbial mixture)
Ecosystem Subtype Unclassified
Specific Ecosystem Unclassified
STUDY COMPOSITION
Number of Biosamples 12
Number of Organisms 41
Number of Seq Projects 84
Number of Analysis Projects 80
Number of Related Studies 0

 

 

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