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Study

Study Name: Determining the genomic basis for interactions between gut fungi and methanogenic archaea

Projects

Biosamples

Organisms

Biosamples: 147 Seq. Projects: 226
STUDY INFORMATION
GOLD Study ID Gs0118397
Study Name Determining the genomic basis for interactions between gut fungi and methanogenic archaea
Other Names
NCBI Umbrella Bioproject Name
NCBI Umbrella Bioproject ID
SRA Studies
SRA Study Id SRP141067  (Link to NCBI )
Study Title Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Alfalfa, Gen0, Rep 2, Chloramphenicol metagenome
Study Abstract
  
SRA Study Id SRP144533  (Link to NCBI )
Study Title Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Xylan, Gen4, Rep 3, Penicillin and Streptomycin metagenome
Study Abstract
  
SRA Study Id SRP141101  (Link to NCBI )
Study Title Goat fecal pellet fungal communities from Santa Barbara, California, USA – diluted pellet 3 metagenome
Study Abstract
  
SRA Study Id SRP144532  (Link to NCBI )
Study Title Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Reed Canary Grass, Gen5, Rep 3, Penicillin and Streptomycin metagenome
Study Abstract
  
SRA Study Id SRP141069  (Link to NCBI )
Study Title Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Xylan, Gen0, Rep 2 metagenome
Study Abstract
  
SRA Study Id SRP144534  (Link to NCBI )
Study Title Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Alfalfa, Gen10, Rep 3 metagenome
Study Abstract
  
SRA Study Id SRP141103  (Link to NCBI )
Study Title Goat fecal pellet fungal communities from Santa Barbara, California, USA – pellet 3 metagenome
Study Abstract
  
SRA Study Id SRP190973  (Link to NCBI )
Study Title Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Xylan, Gen10, Rep 1 metagenome
Study Abstract
  
SRA Study Id SRP190974  (Link to NCBI )
Study Title Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Xylan, Gen10, Rep 2 metagenome
Study Abstract
  
SRA Study Id SRP141020  (Link to NCBI )
Study Title Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Alfalfa, Gen0, Rep 1, Penicillin and Streptomycin metagenome
Study Abstract
  
SRA Study Id SRP141086  (Link to NCBI )
Study Title Goat fecal pellet fungal communities from Santa Barbara, California, USA – pellet 1 metagenome
Study Abstract
  
SRA Study Id SRP141064  (Link to NCBI )
Study Title Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Reed Canary Grass, Gen0, Rep 2, Chloramphenicol metagenome
Study Abstract
  
SRA Study Id SRP141087  (Link to NCBI )
Study Title Goat fecal pellet fungal communities from Santa Barbara, California, USA – pellet 2 metagenome
Study Abstract
  
SRA Study Id SRP141065  (Link to NCBI )
Study Title Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Bagasse, Gen0, Rep 2, Chloramphenicol metagenome
Study Abstract
  
SRA Study Id SRP190971  (Link to NCBI )
Study Title Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Xylan, Gen5, Rep 2 metagenome
Study Abstract
  
SRA Study Id SRP141088  (Link to NCBI )
Study Title Goat fecal pellet fungal communities from Santa Barbara, California, USA – diluted pellet 1 metagenome
Study Abstract
  
SRA Study Id SRP141066  (Link to NCBI )
Study Title Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Reed Canary Grass, Gen0, Rep 3, Penicillin and Streptomycin metagenome
Study Abstract
  
SRA Study Id SRP144530  (Link to NCBI )
Study Title Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen5, Rep 3, Penicillin and Streptomycin metagenome
Study Abstract
  
SRA Study Id SRP144518  (Link to NCBI )
Study Title Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Alfalfa, Gen5, Rep 3 metagenome
Study Abstract
  
SRA Study Id SRP144539  (Link to NCBI )
Study Title Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Reed Canary Grass, Gen10, Rep 3 metagenome
Study Abstract
  
SRA Study Id SRP141106  (Link to NCBI )
Study Title Goat fecal pellet fungal communities from Santa Barbara, California, USA – diluted pellet 2 metagenome
Study Abstract
  
SRA Study Id SRP144538  (Link to NCBI )
Study Title Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen10, Rep 2 metagenome
Study Abstract
  
SRA Study Id SRP214950  (Link to NCBI )
Study Title Caecomyces churrovis A Transcriptome - Ceco_SG_R1
Study Abstract
  
SRA Study Id SRP214951  (Link to NCBI )
Study Title Caecomyces churrovis A Transcriptome - Ceco_SG_R4
Study Abstract
  
SRA Study Id SRP135624  (Link to NCBI )
Study Title Caecomyces sp. A strain:A Genome sequencing
Study Abstract
  
SRA Study Id SRP214952  (Link to NCBI )
Study Title Caecomyces churrovis A Transcriptome - Ceco_SG_R2
Study Abstract
  
SRA Study Id SRP214953  (Link to NCBI )
Study Title Caecomyces churrovis A Transcriptome - Ceco_SG_R3
Study Abstract
  
SRA Study Id SRP190968  (Link to NCBI )
Study Title Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Xylan, Gen5, Rep 1 metagenome
Study Abstract
  
SRA Study Id SRP141078  (Link to NCBI )
Study Title Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Xylan, Gen0, Rep 3 metagenome
Study Abstract
  
SRA Study Id SRP144522  (Link to NCBI )
Study Title Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen5, Rep 2 metagenome
Study Abstract
  
SRA Study Id SRP144545  (Link to NCBI )
Study Title Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen10, Rep 3, Penicillin and Streptomycin metagenome
Study Abstract
  
SRA Study Id SRP170255  (Link to NCBI )
Study Title Caecomyces churrovis A Transcriptome - MAO_Caeco_RNA
Study Abstract
  
SRA Study Id SRP141074  (Link to NCBI )
Study Title Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Xylan, Gen0, Rep 1 metagenome
Study Abstract
  
SRA Study Id SRP144540  (Link to NCBI )
Study Title Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Alfalfa, Gen10, Rep 1, Penicillin and Streptomycin metagenome
Study Abstract
  
SRA Study Id SRP144542  (Link to NCBI )
Study Title Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Reed Canary Grass, Gen10, Rep 3, Penicillin and Streptomycin metagenome
Study Abstract
  
SRA Study Id SRP144541  (Link to NCBI )
Study Title Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Xylan, Gen10, Rep 3, Penicillin and Streptomycin metagenome
Study Abstract
  
SRA Study Id SRP140946  (Link to NCBI )
Study Title Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Reed Canary Grass, Gen0, Rep 3 metagenome
Study Abstract
  
SRA Study Id SRP140944  (Link to NCBI )
Study Title Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Bagasse, Gen0, Rep 2 metagenome
Study Abstract
  
SRA Study Id SRP144528  (Link to NCBI )
Study Title Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Alfalfa, Gen5, Rep 1, Penicillin and Streptomycin metagenome
Study Abstract
  
SRA Study Id SRP144527  (Link to NCBI )
Study Title Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Reed Canary Grass, Gen5, Rep 3 metagenome
Study Abstract
  
SRA Study Id SRP140943  (Link to NCBI )
Study Title Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Alfalfa, Gen0, Rep 3 metagenome
Study Abstract
  
SRA Study Id SRP141019  (Link to NCBI )
Study Title Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Bagasse, Gen0, Rep 3, Penicillin and Streptomycin metagenome
Study Abstract
  
Legacy ER Study ID
Legacy GOLD ID
Added By JGI automated process on 2016-02-23
Last Modified By JGI automated process on 2019-09-06
PI Michelle O'Malley
Description The goal of this work is to develop the knowledge necessary to use understudied anaerobes to enhance lignocellulosic biofuel production. In order to accomplish this we look both to identify lignocellulose active enzyme for use in existing systems as well as develop gut fungi and fungal-methanogen co-cultures as a novel platforms for production.
Relevance
Study Information Link
Study Information Visibility Public
Metagenomic Study Yes
Publication
Is GEBA
Is HMP
ECOSYSTEM CLASSIFICATION
Ecosystem Host-associated
Ecosystem Category Mammals
Ecosystem Type Digestive system
Ecosystem Subtype Unclassified
Specific Ecosystem Unclassified
STUDY COMPOSITION
Number of Biosamples 147
Number of Organisms 4
Number of Seq Projects 226
Number of Analysis Projects 246
Number of Related Studies 0

 

 

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