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Study

Study Name: Determining the genomic basis for interactions between gut fungi and methanogenic archaea

Projects

Biosamples

Organisms

Biosamples: 147 Seq. Projects: 244
STUDY INFORMATION
GOLD Study ID Gs0118397
Study Name Determining the genomic basis for interactions between gut fungi and methanogenic archaea
Other Names
NCBI Umbrella Bioproject Name
NCBI Umbrella Bioproject ID
SRA Studies
SRA Study Id SRP141067  (Link to NCBI )
Study Title Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Alfalfa, Gen0, Rep 2, Chloramphenicol metagenome
Study Abstract
  
SRA Study Id SRP141101  (Link to NCBI )
Study Title Goat fecal pellet fungal communities from Santa Barbara, California, USA – diluted pellet 3 metagenome
Study Abstract
  
SRA Study Id SRP141069  (Link to NCBI )
Study Title Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Xylan, Gen0, Rep 2 metagenome
Study Abstract
  
SRA Study Id SRP141103  (Link to NCBI )
Study Title Goat fecal pellet fungal communities from Santa Barbara, California, USA – pellet 3 metagenome
Study Abstract
  
SRA Study Id SRP141064  (Link to NCBI )
Study Title Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Reed Canary Grass, Gen0, Rep 2, Chloramphenicol metagenome
Study Abstract
  
SRA Study Id SRP141065  (Link to NCBI )
Study Title Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Bagasse, Gen0, Rep 2, Chloramphenicol metagenome
Study Abstract
  
SRA Study Id SRP141066  (Link to NCBI )
Study Title Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Reed Canary Grass, Gen0, Rep 3, Penicillin and Streptomycin metagenome
Study Abstract
  
SRA Study Id SRP141106  (Link to NCBI )
Study Title Goat fecal pellet fungal communities from Santa Barbara, California, USA – diluted pellet 2 metagenome
Study Abstract
  
SRA Study Id SRP288962  (Link to NCBI )
Study Title Anaeromyces robustus S4 Gene Expression Profiling - M11D4 transcriptome
Study Abstract
  
SRA Study Id SRP241358  (Link to NCBI )
Study Title Fibrobacter succinogenes UWB7 Transcriptome - UWB7_AV_R1
Study Abstract
  
SRA Study Id SRP135624  (Link to NCBI )
Study Title Caecomyces sp. A strain:A Genome sequencing
Study Abstract
  
SRA Study Id SRP288963  (Link to NCBI )
Study Title Anaeromyces robustus S4 Gene Expression Profiling - M8D3 transcriptome
Study Abstract
  
SRA Study Id SRP288964  (Link to NCBI )
Study Title Anaeromyces robustus S4 Gene Expression Profiling - M12D4 transcriptome
Study Abstract
  
SRA Study Id SRP288965  (Link to NCBI )
Study Title Anaeromyces robustus S4 Gene Expression Profiling - M14D5 transcriptome
Study Abstract
  
SRA Study Id SRP288960  (Link to NCBI )
Study Title Anaeromyces robustus S4 Gene Expression Profiling - M10D4 transcriptome
Study Abstract
  
SRA Study Id SRP288961  (Link to NCBI )
Study Title Anaeromyces robustus S4 Gene Expression Profiling - M9D4 transcriptome
Study Abstract
  
SRA Study Id SRP241351  (Link to NCBI )
Study Title Fibrobacter succinogenes UWB7 Transcriptome - UWB7_SG_R1_S
Study Abstract
  
SRA Study Id SRP241350  (Link to NCBI )
Study Title Fibrobacter succinogenes UWB7 Transcriptome - UWB7_SG_R3_S
Study Abstract
  
SRA Study Id SRP241353  (Link to NCBI )
Study Title Fibrobacter succinogenes UWB7 Transcriptome - UWB7_SG_R3_C
Study Abstract
  
SRA Study Id SRP241352  (Link to NCBI )
Study Title Fibrobacter succinogenes UWB7 Transcriptome - UWB7_SG_R4_C
Study Abstract
  
SRA Study Id SRP241355  (Link to NCBI )
Study Title Fibrobacter succinogenes UWB7 Transcriptome - UWB7_AV_R4
Study Abstract
  
SRA Study Id SRP288966  (Link to NCBI )
Study Title Anaeromyces robustus S4 Gene Expression Profiling - M13D5 transcriptome
Study Abstract
  
SRA Study Id SRP241354  (Link to NCBI )
Study Title Fibrobacter succinogenes UWB7 Transcriptome - UWB7_SG_R1_C
Study Abstract
  
SRA Study Id SRP241357  (Link to NCBI )
Study Title Fibrobacter succinogenes UWB7 Transcriptome - UWB7_AV_R2
Study Abstract
  
SRA Study Id SRP241356  (Link to NCBI )
Study Title Fibrobacter succinogenes UWB7 Transcriptome - UWB7_AV_R3
Study Abstract
  
SRA Study Id SRP141078  (Link to NCBI )
Study Title Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Xylan, Gen0, Rep 3 metagenome
Study Abstract
  
SRA Study Id SRP141074  (Link to NCBI )
Study Title Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Xylan, Gen0, Rep 1 metagenome
Study Abstract
  
SRA Study Id SRP293367  (Link to NCBI )
Study Title Neocallimastix lanati sp3 Transcriptome - Filterpaper_RNA_MC_2
Study Abstract
  
SRA Study Id SRP293368  (Link to NCBI )
Study Title Neocallimastix lanati sp3 Transcriptome - Filterpaper_RNA_MC_3
Study Abstract
  
SRA Study Id SRP293369  (Link to NCBI )
Study Title Neocallimastix lanati sp3 Transcriptome - Filterpaper_RNA_MC_1
Study Abstract
  
SRA Study Id SRP140946  (Link to NCBI )
Study Title Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Reed Canary Grass, Gen0, Rep 3 metagenome
Study Abstract
  
SRA Study Id SRP140944  (Link to NCBI )
Study Title Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Bagasse, Gen0, Rep 2 metagenome
Study Abstract
  
SRA Study Id SRP140943  (Link to NCBI )
Study Title Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Alfalfa, Gen0, Rep 3 metagenome
Study Abstract
  
SRA Study Id SRP241369  (Link to NCBI )
Study Title Anaeromyces robustus S4 Transcriptome - S4_AV_R2
Study Abstract
  
SRA Study Id SRP241368  (Link to NCBI )
Study Title Anaeromyces robustus S4 Transcriptome - S4_AV_R4
Study Abstract
  
SRA Study Id SRP241367  (Link to NCBI )
Study Title Anaeromyces robustus S4 Transcriptome - S4_AV_R3
Study Abstract
  
SRA Study Id SRP241371  (Link to NCBI )
Study Title Anaeromyces robustus S4 Transcriptome - S4_SG_R4
Study Abstract
  
SRA Study Id SRP241370  (Link to NCBI )
Study Title Anaeromyces robustus S4 Transcriptome - S4_AV_R1
Study Abstract
  
SRA Study Id SRP241373  (Link to NCBI )
Study Title Anaeromyces robustus S4 Transcriptome - S4_SG_R1
Study Abstract
  
SRA Study Id SRP241372  (Link to NCBI )
Study Title Anaeromyces robustus S4 Transcriptome - S4_SG_R2
Study Abstract
  
SRA Study Id SRP241374  (Link to NCBI )
Study Title Anaeromyces robustus S4 Transcriptome - S4_SG_R3
Study Abstract
  
SRA Study Id SRP246673  (Link to NCBI )
Study Title Caecomyces churrovis A Gene Expression Profiling - MA3 transcriptome
Study Abstract
  
SRA Study Id SRP246672  (Link to NCBI )
Study Title Caecomyces churrovis A Gene Expression Profiling - MA4 transcriptome
Study Abstract
  
SRA Study Id SRP246671  (Link to NCBI )
Study Title Caecomyces churrovis A Gene Expression Profiling - MR1 transcriptome
Study Abstract
  
SRA Study Id SRP246670  (Link to NCBI )
Study Title Caecomyces churrovis A Gene Expression Profiling - MG4 transcriptome
Study Abstract
  
SRA Study Id SRP288951  (Link to NCBI )
Study Title Anaeromyces robustus S4 Gene Expression Profiling - M16D5 transcriptome
Study Abstract
  
SRA Study Id SRP288952  (Link to NCBI )
Study Title Anaeromyces robustus S4 Gene Expression Profiling - M15D5 transcriptome
Study Abstract
  
SRA Study Id SRP288953  (Link to NCBI )
Study Title Anaeromyces robustus S4 Gene Expression Profiling - M5D3 transcriptome
Study Abstract
  
SRA Study Id SRP288954  (Link to NCBI )
Study Title Anaeromyces robustus S4 Gene Expression Profiling - M6D3 transcriptome
Study Abstract
  
SRA Study Id SRP246677  (Link to NCBI )
Study Title Caecomyces churrovis A Gene Expression Profiling - MX3 transcriptome
Study Abstract
  
SRA Study Id SRP288959  (Link to NCBI )
Study Title Anaeromyces robustus S4 Gene Expression Profiling - M4D2 transcriptome
Study Abstract
  
SRA Study Id SRP246676  (Link to NCBI )
Study Title Caecomyces churrovis A Gene Expression Profiling - MF3 transcriptome
Study Abstract
  
SRA Study Id SRP246675  (Link to NCBI )
Study Title Caecomyces churrovis A Gene Expression Profiling - MA1 transcriptome
Study Abstract
  
SRA Study Id SRP246674  (Link to NCBI )
Study Title Caecomyces churrovis A Gene Expression Profiling - MA2 transcriptome
Study Abstract
  
SRA Study Id SRP288955  (Link to NCBI )
Study Title Anaeromyces robustus S4 Gene Expression Profiling - M7D3 transcriptome
Study Abstract
  
SRA Study Id SRP280556  (Link to NCBI )
Study Title Neocallimastix lanati sp3 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP288956  (Link to NCBI )
Study Title Anaeromyces robustus S4 Gene Expression Profiling - M20D6 transcriptome
Study Abstract
  
SRA Study Id SRP246679  (Link to NCBI )
Study Title Caecomyces churrovis A Gene Expression Profiling - MF4 transcriptome
Study Abstract
  
SRA Study Id SRP288957  (Link to NCBI )
Study Title Anaeromyces robustus S4 Gene Expression Profiling - M1D2 transcriptome
Study Abstract
  
SRA Study Id SRP246678  (Link to NCBI )
Study Title Caecomyces churrovis A Gene Expression Profiling - MF2 transcriptome
Study Abstract
  
SRA Study Id SRP288958  (Link to NCBI )
Study Title Anaeromyces robustus S4 Gene Expression Profiling - M2D2 transcriptome
Study Abstract
  
SRA Study Id SRP246680  (Link to NCBI )
Study Title Caecomyces churrovis A Gene Expression Profiling - MF1 transcriptome
Study Abstract
  
SRA Study Id SRP144533  (Link to NCBI )
Study Title Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Xylan, Gen4, Rep 3, Penicillin and Streptomycin metagenome
Study Abstract
  
SRA Study Id SRP144532  (Link to NCBI )
Study Title Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Reed Canary Grass, Gen5, Rep 3, Penicillin and Streptomycin metagenome
Study Abstract
  
SRA Study Id SRP144534  (Link to NCBI )
Study Title Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Alfalfa, Gen10, Rep 3 metagenome
Study Abstract
  
SRA Study Id SRP246684  (Link to NCBI )
Study Title Caecomyces churrovis A Gene Expression Profiling - MX4 transcriptome
Study Abstract
  
SRA Study Id SRP246683  (Link to NCBI )
Study Title Caecomyces churrovis A Gene Expression Profiling - MX1 transcriptome
Study Abstract
  
SRA Study Id SRP141020  (Link to NCBI )
Study Title Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Alfalfa, Gen0, Rep 1, Penicillin and Streptomycin metagenome
Study Abstract
  
SRA Study Id SRP246682  (Link to NCBI )
Study Title Caecomyces churrovis A Gene Expression Profiling - MG3 transcriptome
Study Abstract
  
SRA Study Id SRP246681  (Link to NCBI )
Study Title Caecomyces churrovis A Gene Expression Profiling - MX2 transcriptome
Study Abstract
  
SRA Study Id SRP144530  (Link to NCBI )
Study Title Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen5, Rep 3, Penicillin and Streptomycin metagenome
Study Abstract
  
SRA Study Id SRP144539  (Link to NCBI )
Study Title Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Reed Canary Grass, Gen10, Rep 3 metagenome
Study Abstract
  
SRA Study Id SRP144538  (Link to NCBI )
Study Title Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen10, Rep 2 metagenome
Study Abstract
  
SRA Study Id SRP246688  (Link to NCBI )
Study Title Caecomyces churrovis A Gene Expression Profiling - MR3 transcriptome
Study Abstract
  
SRA Study Id SRP246687  (Link to NCBI )
Study Title Caecomyces churrovis A Gene Expression Profiling - MR4 transcriptome
Study Abstract
  
SRA Study Id SRP246686  (Link to NCBI )
Study Title Caecomyces churrovis A Gene Expression Profiling - MG1 transcriptome
Study Abstract
  
SRA Study Id SRP246685  (Link to NCBI )
Study Title Caecomyces churrovis A Gene Expression Profiling - MG2 transcriptome
Study Abstract
  
SRA Study Id SRP246689  (Link to NCBI )
Study Title Caecomyces churrovis A Gene Expression Profiling - MR2 transcriptome
Study Abstract
  
SRA Study Id SRP144545  (Link to NCBI )
Study Title Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen10, Rep 3, Penicillin and Streptomycin metagenome
Study Abstract
  
SRA Study Id SRP170255  (Link to NCBI )
Study Title Caecomyces churrovis A Transcriptome - MAO_Caeco_RNA
Study Abstract
  
SRA Study Id SRP144540  (Link to NCBI )
Study Title Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Alfalfa, Gen10, Rep 1, Penicillin and Streptomycin metagenome
Study Abstract
  
SRA Study Id SRP144542  (Link to NCBI )
Study Title Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Reed Canary Grass, Gen10, Rep 3, Penicillin and Streptomycin metagenome
Study Abstract
  
SRA Study Id SRP144541  (Link to NCBI )
Study Title Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Xylan, Gen10, Rep 3, Penicillin and Streptomycin metagenome
Study Abstract
  
SRA Study Id SRP293370  (Link to NCBI )
Study Title Neocallimastix lanati sp3 Transcriptome - Cellobiose_RNA_MC_3
Study Abstract
  
SRA Study Id SRP293371  (Link to NCBI )
Study Title Neocallimastix lanati sp3 Transcriptome - Cellobiose_RNA_MC_2
Study Abstract
  
SRA Study Id SRP293372  (Link to NCBI )
Study Title Neocallimastix lanati sp3 Transcriptome - AS_RNA_MC_3
Study Abstract
  
SRA Study Id SRP190973  (Link to NCBI )
Study Title Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Xylan, Gen10, Rep 1 metagenome
Study Abstract
  
SRA Study Id SRP293373  (Link to NCBI )
Study Title Neocallimastix lanati sp3 Transcriptome - CS_RNA_MC_3
Study Abstract
  
SRA Study Id SRP190974  (Link to NCBI )
Study Title Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Xylan, Gen10, Rep 2 metagenome
Study Abstract
  
SRA Study Id SRP141086  (Link to NCBI )
Study Title Goat fecal pellet fungal communities from Santa Barbara, California, USA – pellet 1 metagenome
Study Abstract
  
SRA Study Id SRP293374  (Link to NCBI )
Study Title Neocallimastix lanati sp3 Transcriptome - AS_RNA_MC_2
Study Abstract
  
SRA Study Id SRP141087  (Link to NCBI )
Study Title Goat fecal pellet fungal communities from Santa Barbara, California, USA – pellet 2 metagenome
Study Abstract
  
SRA Study Id SRP190971  (Link to NCBI )
Study Title Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Xylan, Gen5, Rep 2 metagenome
Study Abstract
  
SRA Study Id SRP293375  (Link to NCBI )
Study Title Neocallimastix lanati sp3 Transcriptome - CS_RNA_MC_1
Study Abstract
  
SRA Study Id SRP141088  (Link to NCBI )
Study Title Goat fecal pellet fungal communities from Santa Barbara, California, USA – diluted pellet 1 metagenome
Study Abstract
  
SRA Study Id SRP293376  (Link to NCBI )
Study Title Neocallimastix lanati sp3 Transcriptome - RCG_RNA_MC_3
Study Abstract
  
SRA Study Id SRP293377  (Link to NCBI )
Study Title Neocallimastix lanati sp3 Transcriptome - CS_RNA_MC_2
Study Abstract
  
SRA Study Id SRP144518  (Link to NCBI )
Study Title Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Alfalfa, Gen5, Rep 3 metagenome
Study Abstract
  
SRA Study Id SRP293378  (Link to NCBI )
Study Title Neocallimastix lanati sp3 Transcriptome - AS_RNA_MC_1
Study Abstract
  
SRA Study Id SRP293379  (Link to NCBI )
Study Title Neocallimastix lanati sp3 Transcriptome - S3_RNA_MC_RCG
Study Abstract
  
SRA Study Id SRP214950  (Link to NCBI )
Study Title Caecomyces churrovis A Transcriptome - Ceco_SG_R1
Study Abstract
  
SRA Study Id SRP214951  (Link to NCBI )
Study Title Caecomyces churrovis A Transcriptome - Ceco_SG_R4
Study Abstract
  
SRA Study Id SRP214952  (Link to NCBI )
Study Title Caecomyces churrovis A Transcriptome - Ceco_SG_R2
Study Abstract
  
SRA Study Id SRP214953  (Link to NCBI )
Study Title Caecomyces churrovis A Transcriptome - Ceco_SG_R3
Study Abstract
  
SRA Study Id SRP190968  (Link to NCBI )
Study Title Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Xylan, Gen5, Rep 1 metagenome
Study Abstract
  
SRA Study Id SRP144522  (Link to NCBI )
Study Title Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen5, Rep 2 metagenome
Study Abstract
  
SRA Study Id SRP293380  (Link to NCBI )
Study Title Neocallimastix lanati sp3 Transcriptome - Cellobiose_RNA_MC_1
Study Abstract
  
SRA Study Id SRP293381  (Link to NCBI )
Study Title Neocallimastix lanati sp3 Transcriptome - RCG_RNA_MC_1
Study Abstract
  
SRA Study Id SRP144528  (Link to NCBI )
Study Title Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Alfalfa, Gen5, Rep 1, Penicillin and Streptomycin metagenome
Study Abstract
  
SRA Study Id SRP144527  (Link to NCBI )
Study Title Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Reed Canary Grass, Gen5, Rep 3 metagenome
Study Abstract
  
SRA Study Id SRP141019  (Link to NCBI )
Study Title Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Bagasse, Gen0, Rep 3, Penicillin and Streptomycin metagenome
Study Abstract
  
SRA Study Id SRP241349  (Link to NCBI )
Study Title Fibrobacter succinogenes UWB7 Transcriptome - UWB7_SG_R4_S
Study Abstract
  
Legacy ER Study ID
Legacy GOLD ID
Added By JGI automated process on 2016-02-23
Last Modified By JGI automated process on 2019-09-06
PI Michelle O'Malley
Description The goal of this work is to develop the knowledge necessary to use understudied anaerobes to enhance lignocellulosic biofuel production. In order to accomplish this we look both to identify lignocellulose active enzyme for use in existing systems as well as develop gut fungi and fungal-methanogen co-cultures as a novel platforms for production.
Relevance
Study Information Link
Study Information Visibility Public
Metagenomic Study Yes
Publication
Is GEBA
Is HMP
ECOSYSTEM CLASSIFICATION
Ecosystem Host-associated
Ecosystem Category Mammals
Ecosystem Type Digestive system
Ecosystem Subtype Unclassified
Specific Ecosystem Unclassified
STUDY COMPOSITION
Number of Biosamples 147
Number of Organisms 6
Number of Seq Projects 244
Number of Analysis Projects 217
Number of Related Studies 0

 

 

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