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Study

Study Name: Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey

Projects

Biosamples

Organisms

Biosamples: 939 Seq. Projects: 1348
STUDY INFORMATION
GOLD Study ID Gs0117946
Study Name Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey
Other Names
NCBI Umbrella Bioproject Name
NCBI Umbrella Bioproject ID
SRA Studies
SRA Study Id ERP006156  (Link to NCBI )
Study Title
Study Abstract
  
SRA Study Id ERP003628  (Link to NCBI )
Study Title Shotgun Sequencing of Tara Oceans DNA samples corresponding to size fractions for protist
Study Abstract Seawater was filtered from different depths to retain small and large cell sizes. The DNA was extracted and submitted to high throughput sequencing.
  
SRA Study Id ERP001737  (Link to NCBI )
Study Title Shotgun Sequencing of Tara Oceans DNA samples corresponding to size fractions for prokaryotes and large DNA viruses
Study Abstract Seawater was filtered from different depths to retain small cell sizes. The DNA was extracted and submitted to high throughput sequencing.
  
SRA Study Id ERP003708  (Link to NCBI )
Study Title Shotgun Sequencing of Tara Oceans DNA samples corresponding to size fractions for DNA viruses
Study Abstract Seawater was filtered from different depths to retain small cell sizes. The DNA was extracted after viral particle purification and submitted to high throughput sequencing.
  
SRA Study Id ERP006157  (Link to NCBI )
Study Title Amplicon sequencing of Tara Oceans DNA samples corresponding to size fractions for protists.
Study Abstract Analysis of 18S DNA in Tara Oceans protit size fractions through amplicon sequencing.
  
SRA Study Id ERP018626  (Link to NCBI )
Study Title Diplonemids are the most diverse planktonic eukaryotes in the world ocean
Study Abstract Diplonemids sequence data corresponding to the V9 loop of the 18S rDNA in 850 size-fractionnated plankton communities sampled at 123 location including samples from the mesopelagic zone.
  
Legacy ER Study ID
Legacy GOLD ID
Added By JGI automated process on 2015-12-18
Last Modified By Tatiparthi Reddy on 2017-04-28
PI Matthew Sullivan
Description Metatranscriptome and Metagenome sequencing from different water depths to study small and large cell size protists and viral communities
Relevance
Study Information Link
Study Information Visibility Public
Metagenomic Study Yes
Publication
Is GEBA
Is HMP
ECOSYSTEM CLASSIFICATION
Ecosystem Environmental
Ecosystem Category Aquatic
Ecosystem Type Marine
Ecosystem Subtype
Specific Ecosystem
STUDY COMPOSITION
Number of Biosamples 939
Number of Organisms 0
Number of Seq Projects 1348
Number of Analysis Projects 1995
Number of Related Studies 0

 

 

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