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Study

Study Name: Above-ground endophytic microbial communities from plants in different locations in the United States

Projects

Biosamples

Organisms

Biosamples: 100 Seq. Projects: 154
STUDY INFORMATION
GOLD Study ID Gs0116272
Study Name Above-ground endophytic microbial communities from plants in different locations in the United States
Other Names Genome sequencing of diazotrophic endophytes in native pines, poplar and willow
NCBI Umbrella Bioproject Name
NCBI Umbrella Bioproject ID
SRA Studies
SRA Study Id SRP164124  (Link to NCBI )
Study Title Enterobacter sp. WPL_7_2 genome sequencing
Study Abstract
  
SRA Study Id SRP164126  (Link to NCBI )
Study Title Rhizobium sp. WW_1 strain:WW_1 Genome sequencing
Study Abstract
  
SRA Study Id SRP164125  (Link to NCBI )
Study Title Pseudomonas sp. WPR_5_2 Genome sequencing
Study Abstract
  
SRA Study Id SRP164128  (Link to NCBI )
Study Title Enterobacter sp. WPR_3_1 Genome sequencing
Study Abstract
  
SRA Study Id SRP143408  (Link to NCBI )
Study Title Leaf-associated microbial communities from Abies magnifica in Yosemite National Park, California, United States - Redfir_Yose_1 metagenome
Study Abstract
  
SRA Study Id SRP164127  (Link to NCBI )
Study Title Enterobacter sp. WPL_7_1 genome sequencing
Study Abstract
  
SRA Study Id SRP088363  (Link to NCBI )
Study Title Rhizobium sp. jgi pfnr15_l4 Genome sequencing
Study Abstract
  
SRA Study Id SRP143404  (Link to NCBI )
Study Title Leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States - Lodgepole_Yose_4 metagenome
Study Abstract
  
SRA Study Id SRP175141  (Link to NCBI )
Study Title Pseudomonas graminis WP_8 genome sequencing
Study Abstract
  
SRA Study Id SRP175142  (Link to NCBI )
Study Title Ochrobactrum sp. LP_5_YM strain:LP_5_YM Genome sequencing
Study Abstract
  
SRA Study Id SRP175145  (Link to NCBI )
Study Title Rhodococcus sp. LP_3_YM strain:LP_3_YM Genome sequencing
Study Abstract
  
SRA Study Id SRP088360  (Link to NCBI )
Study Title Rhizobium sp. jgi pfnr15_e18 Genome sequencing
Study Abstract
  
SRA Study Id SRP180850  (Link to NCBI )
Study Title Pseudomonas sp. LP_7_YM strain:LP_7_YM Genome sequencing
Study Abstract
  
SRA Study Id SRP222611  (Link to NCBI )
Study Title Curtobacterium pusillum WPL5_2 genome sequencing
Study Abstract
  
SRA Study Id SRP164131  (Link to NCBI )
Study Title Pseudomonas synxantha finPsuedoS genome sequencing
Study Abstract
  
SRA Study Id SRP143411  (Link to NCBI )
Study Title Leaf-associated microbial communities from Abies magnifica in Yosemite National Park, California, United States - Redfir_Yose_2 metagenome
Study Abstract
  
SRA Study Id SRP164132  (Link to NCBI )
Study Title Rahnella aquatilis WPL_8_1 genome sequencing
Study Abstract
  
SRA Study Id SRP143397  (Link to NCBI )
Study Title Leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States - Lodgepole_Yose_3 metagenome
Study Abstract
  
SRA Study Id SRP180838  (Link to NCBI )
Study Title Bacillus thuringiensis LP_2_YM genome sequencing
Study Abstract
  
SRA Study Id SRP088358  (Link to NCBI )
Study Title Rhizobium sp. JGI PFNR15_M10 Genome sequencing
Study Abstract
  
SRA Study Id SRP088355  (Link to NCBI )
Study Title Rhizobium sp. JGI PFNR15_M14 Genome sequencing
Study Abstract
  
SRA Study Id SRP088356  (Link to NCBI )
Study Title Rhizobium sp. jgi pfnr15_k19 Genome sequencing
Study Abstract
  
SRA Study Id SRP222608  (Link to NCBI )
Study Title Pantoea agglomerans WP7 genome sequencing
Study Abstract
  
SRA Study Id SRP222607  (Link to NCBI )
Study Title Curtobacterium flaccumfaciens WW7 genome sequencing
Study Abstract
  
SRA Study Id SRP180841  (Link to NCBI )
Study Title Bacillus thuringiensis LP_1_YM genome sequencing
Study Abstract
  
SRA Study Id SRP180842  (Link to NCBI )
Study Title Luteibacter rhizovicinus LP_13_YM genome sequencing
Study Abstract
  
SRA Study Id SRP222609  (Link to NCBI )
Study Title Paraburkholderia tropici WP4_3_2 genome sequencing
Study Abstract
  
SRA Study Id SRP175155  (Link to NCBI )
Study Title Rhodococcus sp. LP_11_YM strain:LP_11_YM Genome sequencing
Study Abstract
  
SRA Study Id SRP175133  (Link to NCBI )
Study Title Pseudomonas sp. LP_6_YM strain:LP_6_YM Genome sequencing
Study Abstract
  
SRA Study Id SRP180843  (Link to NCBI )
Study Title Pseudomonas sp. LP_4_YM strain:LP_4_YM Genome sequencing
Study Abstract
  
SRA Study Id SRP109555  (Link to NCBI )
Study Title Acetobacteraceae bacterium strain:JGI PFNR15_L19 Genome sequencing
Study Abstract
  
SRA Study Id SRP222606  (Link to NCBI )
Study Title Pseudomonas koreensis WW6 genome sequencing
Study Abstract
  
SRA Study Id SRP175137  (Link to NCBI )
Study Title Burkholderia vietnamiensis WW_17 genome sequencing
Study Abstract
  
SRA Study Id SRP175139  (Link to NCBI )
Study Title Pseudomonas sp. LP_8_YM strain:LP_8_YM Genome sequencing
Study Abstract
  
SRA Study Id SRP143393  (Link to NCBI )
Study Title Leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States - Lodgepole_Yose_2 metagenome
Study Abstract
  
SRA Study Id SRP143390  (Link to NCBI )
Study Title Leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States - Lodgepole_Yose_1 metagenome
Study Abstract
  
Legacy ER Study ID
Legacy GOLD ID
Added By JGI automated process on 2015-08-22
Last Modified By JGI automated process on 2019-09-06
PI Carolin Frank
Description The goal of this project is to study the above-ground endophytic communities of several plant species that naturally grow in nutrient limited environments for applications in sustainable agriculture and biofuel production, and reducing the need for artificial N fertilization.
Relevance
Study Information Link
Study Information Visibility Public
Metagenomic Study Yes
Publication
Is GEBA
Is HMP
ECOSYSTEM CLASSIFICATION
Ecosystem Host-associated
Ecosystem Category Plants
Ecosystem Type Phyllosphere
Ecosystem Subtype Unclassified
Specific Ecosystem Unclassified
STUDY COMPOSITION
Number of Biosamples 100
Number of Organisms 54
Number of Seq Projects 154
Number of Analysis Projects 140
Number of Related Studies 0

 

 

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