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Study

Study Name: Extremophilic microbial mat communities from USA and Mexico

Projects

Biosamples

Organisms

Biosamples: 420 Seq. Projects: 420
STUDY INFORMATION
GOLD Study ID Gs0116196
Study Name Extremophilic microbial mat communities from USA and Mexico
Other Names
NCBI Umbrella Bioproject Name
NCBI Umbrella Bioproject ID
SRA Studies
SRA Study Id SRP140457  (Link to NCBI )
Study Title Metatranscriptome of extremophilic microbial mat communities from Yellowstone National Park, Wyoming, USA - CONBC_RNA
Study Abstract
  
SRA Study Id SRP140456  (Link to NCBI )
Study Title Metatranscriptome of extremophilic microbial mat communities from Yellowstone National Park, Wyoming, USA - OCTB_RNA
Study Abstract
  
SRA Study Id SRP212421  (Link to NCBI )
Study Title Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_15 metagenome
Study Abstract
  
SRA Study Id SRP212420  (Link to NCBI )
Study Title Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_top metagenome
Study Abstract
  
SRA Study Id SRP109161  (Link to NCBI )
Study Title Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - BED_virus_MetaG metagenome
Study Abstract
  
SRA Study Id SRP241040  (Link to NCBI )
Study Title Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_bottom metagenome
Study Abstract
  
SRA Study Id SRP212477  (Link to NCBI )
Study Title Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0 metagenome
Study Abstract
  
SRA Study Id SRP109978  (Link to NCBI )
Study Title Extremophilic microbial mat communities from Yellowstone National Park, USA - OSPB_Mat_host_9_15 metagenome
Study Abstract
  
SRA Study Id SRP212430  (Link to NCBI )
Study Title Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_0 metagenome
Study Abstract
  
SRA Study Id SRP109178  (Link to NCBI )
Study Title Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - OSPB_host_MetaG metagenome
Study Abstract
  
SRA Study Id SRP109173  (Link to NCBI )
Study Title Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - BED_host_MetaG metagenome
Study Abstract
  
SRA Study Id SRP248168  (Link to NCBI )
Study Title Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_middle metagenome
Study Abstract
  
SRA Study Id SRP212409  (Link to NCBI )
Study Title Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_bottom metagenome
Study Abstract
  
SRA Study Id SRP104938  (Link to NCBI )
Study Title Extremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_host_6_15 metagenome
Study Abstract
  
SRA Study Id SRP140478  (Link to NCBI )
Study Title Extremophilic microbial mat communities from Yellowstone National Park, Wyoming, USA - OCT_B_HostDNA metagenome
Study Abstract
  
SRA Study Id SRP212488  (Link to NCBI )
Study Title Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0 metagenome
Study Abstract
  
SRA Study Id SRP213577  (Link to NCBI )
Study Title Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G14_18 metagenome
Study Abstract
  
SRA Study Id SRP213575  (Link to NCBI )
Study Title Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20 metagenome
Study Abstract
  
SRA Study Id SRP212486  (Link to NCBI )
Study Title Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_0 metagenome
Study Abstract
  
SRA Study Id SRP212485  (Link to NCBI )
Study Title Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G10_0 metagenome
Study Abstract
  
SRA Study Id SRP212484  (Link to NCBI )
Study Title Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_36 metagenome
Study Abstract
  
SRA Study Id SRP212483  (Link to NCBI )
Study Title Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_20 metagenome
Study Abstract
  
SRA Study Id SRP212481  (Link to NCBI )
Study Title Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0 metagenome
Study Abstract
  
SRA Study Id SRP213570  (Link to NCBI )
Study Title Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_20 metagenome
Study Abstract
  
SRA Study Id SRP212480  (Link to NCBI )
Study Title Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_40 metagenome
Study Abstract
  
SRA Study Id SRP109146  (Link to NCBI )
Study Title Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_B host_MetaG metagenome
Study Abstract
  
SRA Study Id SRP109980  (Link to NCBI )
Study Title Extremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_host_9_15 metagenome
Study Abstract
  
SRA Study Id SRP104948  (Link to NCBI )
Study Title Extremophilic microbial mat communities from Yellowstone National Park, USA - OSPB_Mat_virus_9_15 metagenome
Study Abstract
  
SRA Study Id SRP212419  (Link to NCBI )
Study Title Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_0 metagenome
Study Abstract
  
SRA Study Id SRP212417  (Link to NCBI )
Study Title Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_top metagenome
Study Abstract
  
SRA Study Id SRP212416  (Link to NCBI )
Study Title Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G03_0 metagenome
Study Abstract
  
SRA Study Id SRP104943  (Link to NCBI )
Study Title Extremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_virus_9_15 metagenome
Study Abstract
  
SRA Study Id SRP104946  (Link to NCBI )
Study Title Extremophilic microbial mat communities from Yellowstone National Park, USA - OSPB_Slides-mat_host_7_15 metagenome
Study Abstract
  
SRA Study Id SRP104940  (Link to NCBI )
Study Title Extremophilic microbial mat communities from Yellowstone National Park, USA - BED_Slide_host_7_15 metagenome
Study Abstract
  
SRA Study Id SRP212499  (Link to NCBI )
Study Title Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G14_0 metagenome
Study Abstract
  
SRA Study Id SRP212410  (Link to NCBI )
Study Title Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_middle metagenome
Study Abstract
  
SRA Study Id SRP212498  (Link to NCBI )
Study Title Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40 metagenome
Study Abstract
  
SRA Study Id SRP104942  (Link to NCBI )
Study Title Extremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_virus_6_15 metagenome
Study Abstract
  
SRA Study Id SRP212497  (Link to NCBI )
Study Title Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_20 metagenome
Study Abstract
  
SRA Study Id SRP213586  (Link to NCBI )
Study Title Extremophilic microbial mat communities from Washburn Hot Springs, YNP, Wyoming, USA - WHS_1_MG metagenome
Study Abstract
  
SRA Study Id SRP212496  (Link to NCBI )
Study Title Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20 metagenome
Study Abstract
  
SRA Study Id SRP212495  (Link to NCBI )
Study Title Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_0 metagenome
Study Abstract
  
SRA Study Id SRP212493  (Link to NCBI )
Study Title Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_0 metagenome
Study Abstract
  
SRA Study Id SRP213582  (Link to NCBI )
Study Title Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G15_0 metagenome
Study Abstract
  
SRA Study Id SRP212492  (Link to NCBI )
Study Title Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_40 metagenome
Study Abstract
  
SRA Study Id SRP213581  (Link to NCBI )
Study Title Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16 metagenome
Study Abstract
  
SRA Study Id SRP212491  (Link to NCBI )
Study Title Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_20 metagenome
Study Abstract
  
SRA Study Id SRP109157  (Link to NCBI )
Study Title Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_C host_MetaG metagenome
Study Abstract
  
SRA Study Id SRP109156  (Link to NCBI )
Study Title Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_C virus_MetaG metagenome
Study Abstract
  
SRA Study Id SRP109154  (Link to NCBI )
Study Title Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_B nyco_MetaG metagenome
Study Abstract
  
Legacy ER Study ID
Legacy GOLD ID
Added By Supratim Mukherjee on 2015-07-20
Last Modified By JGI automated process on 2019-09-06
PI Jim Fredrickson
Description The primary goal of this project is to develop highly-resolved, population-specific functional profiles of dynamic microbial mat communities (hypersaline phototrophic and hightemperature chemotrophic systems) across relevant spatial and temporal scales.
Relevance Carbon cycle
Bioenergy
Study Information Link
Study Information Visibility Public
Metagenomic Study Yes
Publication
Is GEBA No
Is HMP No
ECOSYSTEM CLASSIFICATION
Ecosystem Environmental
Ecosystem Category Aquatic
Ecosystem Type Thermal springs
Ecosystem Subtype Hot (42-90C)
Specific Ecosystem Unclassified
STUDY COMPOSITION
Number of Biosamples 420
Number of Organisms 0
Number of Seq Projects 420
Number of Analysis Projects 439
Number of Related Studies 0

 

 

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