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Study

Study Name: Freshwater and sediment microbial communities from various areas in North America, analyzing microbe dynamics in response to fracking

Projects

Biosamples

Organisms

Biosamples: 40 Seq. Projects: 177
STUDY INFORMATION
GOLD Study ID Gs0114818
Study Name Freshwater and sediment microbial communities from various areas in North America, analyzing microbe dynamics in response to fracking
Other Names Microbial community dynamics in response to fracking in North America
NCBI Umbrella Bioproject Name
NCBI Umbrella Bioproject ID
SRA Studies
SRA Study Id SRP123757  (Link to NCBI )
Study Title Thermoplasmatales archaeon JGI SC39-E20 Genome sequencing
Study Abstract
  
SRA Study Id SRP143763  (Link to NCBI )
Study Title Metatranscriptome of freshwater microbial communities from pre-fracked creek in Pennsylvania, United States - DR:C
Study Abstract
  
SRA Study Id SRP143762  (Link to NCBI )
Study Title Metatranscriptome of freshwater microbial communities from pre-fracked creek in Pennsylvania, United States - EE:C
Study Abstract
  
SRA Study Id SRP153609  (Link to NCBI )
Study Title Klebsiella oxytoca 67 genome sequencing
Study Abstract
  
SRA Study Id SRP143765  (Link to NCBI )
Study Title Metatranscriptome of freshwater microbial communities from pre-fracked creek in Pennsylvania, United States - WE:C
Study Abstract
  
SRA Study Id SRP143764  (Link to NCBI )
Study Title Metatranscriptome of freshwater microbial communities from post-fracked creek in Pennsylvania, United States - LL:C
Study Abstract
  
SRA Study Id SRP153608  (Link to NCBI )
Study Title Aeromonas salmonicida 17 genome sequencing
Study Abstract
  
SRA Study Id SRP148018  (Link to NCBI )
Study Title Brevibacterium celere 3b_TX genome sequencing
Study Abstract
  
SRA Study Id SRP148017  (Link to NCBI )
Study Title Bacillus mycoides DB-1 genome sequencing
Study Abstract
  
SRA Study Id SRP143761  (Link to NCBI )
Study Title Metatranscriptome of freshwater microbial communities from post-fracked creek in Pennsylvania, United States - NH:C
Study Abstract
  
SRA Study Id SRP148016  (Link to NCBI )
Study Title Bacillus safensis 47a_TX genome sequencing
Study Abstract
  
SRA Study Id SRP148015  (Link to NCBI )
Study Title Brevibacterium sanguinis 2b_TX genome sequencing
Study Abstract
  
SRA Study Id SRP155074  (Link to NCBI )
Study Title Bacillus aquimaris 97B genome sequencing
Study Abstract
  
SRA Study Id SRP123750  (Link to NCBI )
Study Title uncultured Rhodospirillales bacterium strain:JGI SC39-K17 Genome sequencing
Study Abstract
  
SRA Study Id SRP107707  (Link to NCBI )
Study Title Synthetic microbial communities from Ohio, USA - SynthPrep_16_END_DS12_MetaG metagenome
Study Abstract
  
SRA Study Id SRP123751  (Link to NCBI )
Study Title uncultured Kiloniellales bacterium strain:JGI SC39-F14 Genome sequencing
Study Abstract
  
SRA Study Id SRP107702  (Link to NCBI )
Study Title Synthetic microbial communities from Ohio, USA - SynthPrep_1_END_DS7_MetaG metagenome
Study Abstract
  
SRA Study Id SRP143767  (Link to NCBI )
Study Title Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2014
Study Abstract
  
SRA Study Id SRP123753  (Link to NCBI )
Study Title Uncultured parvibaculum JGI SC39-H5 genome sequencing
Study Abstract
  
SRA Study Id SRP123754  (Link to NCBI )
Study Title Uncultured Xanthobacter bacterium JGI SC39-B18 genome sequencing
Study Abstract
  
SRA Study Id SRP143766  (Link to NCBI )
Study Title Metatranscriptome of freshwater microbial communities from post-fracked creek in Pennsylvania, United States - AB:C
Study Abstract
  
SRA Study Id SRP107703  (Link to NCBI )
Study Title Synthetic microbial communities from Ohio, USA - SynthPrep_5_END_DS10_MetaG metagenome
Study Abstract
  
SRA Study Id SRP123755  (Link to NCBI )
Study Title Uncultured parvibaculum JGI SC39-J11 genome sequencing
Study Abstract
  
SRA Study Id SRP123756  (Link to NCBI )
Study Title Caulobacter sp. JGI SC39-H11 Genome sequencing
Study Abstract
  
SRA Study Id SRP093063  (Link to NCBI )
Study Title uncultured Kiloniellales bacterium strain:JGI SC39-H20 Genome sequencing
Study Abstract
  
SRA Study Id SRP148092  (Link to NCBI )
Study Title Vibrio parahaemolyticus 108B genome sequencing
Study Abstract
  
SRA Study Id SRP155077  (Link to NCBI )
Study Title Bacillus sp. DB-2 Genome sequencing
Study Abstract
  
SRA Study Id SRP153610  (Link to NCBI )
Study Title Raoultella planticola 103 genome sequencing
Study Abstract
  
SRA Study Id SRP155078  (Link to NCBI )
Study Title Bacillus subtilis 51_TX genome sequencing
Study Abstract
  
SRA Study Id SRP153614  (Link to NCBI )
Study Title Idiomarina sp. 017G Genome sequencing
Study Abstract
  
SRA Study Id SRP148014  (Link to NCBI )
Study Title Bacillus oceanisediminis 15_TX genome sequencing
Study Abstract
  
SRA Study Id SRP153613  (Link to NCBI )
Study Title Idiomarina Ioihiensis E2 genome sequencing
Study Abstract
  
SRA Study Id SRP148013  (Link to NCBI )
Study Title Bacillus oceanisediminis 13_TX genome sequencing
Study Abstract
  
SRA Study Id SRP153612  (Link to NCBI )
Study Title Idiomarina sp. H2 strain:H2 Genome sequencing
Study Abstract
  
SRA Study Id SRP148012  (Link to NCBI )
Study Title Bacillus licheniformis 19_TX genome sequencing
Study Abstract
  
SRA Study Id SRP153615  (Link to NCBI )
Study Title Marinobacter pelagius 114J genome sequencing
Study Abstract
  
SRA Study Id SRP143774  (Link to NCBI )
Study Title Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016
Study Abstract
  
SRA Study Id SRP123747  (Link to NCBI )
Study Title Alphaproteobacteria bacterium JGI SC39-D17 Genome sequencing
Study Abstract
  
SRA Study Id SRP143773  (Link to NCBI )
Study Title Metatranscriptome of freshwater sediment microbial communities from pre-fracked creek in Pennsylvania, United States - G-2016_18
Study Abstract
  
SRA Study Id SRP143776  (Link to NCBI )
Study Title Metatranscriptome of freshwater sediment microbial communities from pre-fracked creek in Pennsylvania, United States - G-2016_45
Study Abstract
  
SRA Study Id SRP123749  (Link to NCBI )
Study Title Alphaproteobacteria bacterium JGI SC39-G12 Genome sequencing
Study Abstract
  
SRA Study Id SRP143775  (Link to NCBI )
Study Title Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - G-2016_31
Study Abstract
  
SRA Study Id SRP143770  (Link to NCBI )
Study Title Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2015
Study Abstract
  
SRA Study Id SRP143772  (Link to NCBI )
Study Title Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - G-2016_32
Study Abstract
  
SRA Study Id SRP145839  (Link to NCBI )
Study Title Idiomarina tainanensis 125Bg genome sequencing
Study Abstract
  
SRA Study Id SRP123061  (Link to NCBI )
Study Title Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaT_SC_2013 metatranscriptome
Study Abstract
  
SRA Study Id SRP175138  (Link to NCBI )
Study Title Shewanella fodinae 74A genome sequencing
Study Abstract
  
SRA Study Id SRP153607  (Link to NCBI )
Study Title Salegentibacter sp. 24 strain:24 Genome sequencing
Study Abstract
  
SRA Study Id SRP171654  (Link to NCBI )
Study Title Bacillus cereus 121B genome sequencing
Study Abstract
  
SRA Study Id SRP171652  (Link to NCBI )
Study Title Dietzia maris 97 genome sequencing
Study Abstract
  
SRA Study Id SRP107689  (Link to NCBI )
Study Title Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013 metagenome
Study Abstract
  
SRA Study Id SRP175140  (Link to NCBI )
Study Title Martelella mediterranea 175.2 genome sequencing
Study Abstract
  
SRA Study Id SRP148072  (Link to NCBI )
Study Title Rhodobacter sp. 140A Genome sequencing
Study Abstract
  
SRA Study Id SRP148071  (Link to NCBI )
Study Title Raoultella planticola 103_o genome sequencing
Study Abstract
  
SRA Study Id SRP148078  (Link to NCBI )
Study Title Sunxiuqinia elliptica 114D_o genome sequencing
Study Abstract
  
SRA Study Id SRP148077  (Link to NCBI )
Study Title Sunxiuqinia elliptica 114D genome sequencing
Study Abstract
  
SRA Study Id SRP148076  (Link to NCBI )
Study Title Marinobacter hydrocarbonoclasticus 114E genome sequencing
Study Abstract
  
SRA Study Id SRP148075  (Link to NCBI )
Study Title Shewanella putrefaciens 97 genome sequencing
Study Abstract
  
SRA Study Id SRP117932  (Link to NCBI )
Study Title Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaT_SC_2012 metatranscriptome
Study Abstract
  
SRA Study Id SRP148074  (Link to NCBI )
Study Title Paenibacillus pabuli DB-3 genome sequencing
Study Abstract
  
SRA Study Id SRP230543  (Link to NCBI )
Study Title Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaT_CSR_2013 metatranscriptome
Study Abstract
  
SRA Study Id SRP107698  (Link to NCBI )
Study Title Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013 metagenome
Study Abstract
  
SRA Study Id SRP107699  (Link to NCBI )
Study Title Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 metagenome
Study Abstract
  
SRA Study Id SRP107697  (Link to NCBI )
Study Title Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014 metagenome
Study Abstract
  
SRA Study Id SRP107694  (Link to NCBI )
Study Title Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 metagenome
Study Abstract
  
SRA Study Id SRP107695  (Link to NCBI )
Study Title Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012 metagenome
Study Abstract
  
SRA Study Id SRP107693  (Link to NCBI )
Study Title Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 metagenome
Study Abstract
  
SRA Study Id SRP145094  (Link to NCBI )
Study Title Bacillus firmus 14_TX genome sequencing
Study Abstract
  
SRA Study Id SRP088623  (Link to NCBI )
Study Title uncultured bacterium strain:JGI SC39-E13 Genome sequencing
Study Abstract
  
SRA Study Id SRP193424  (Link to NCBI )
Study Title Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaT_CSR_2012 metatranscriptome
Study Abstract
  
SRA Study Id SRP088621  (Link to NCBI )
Study Title Thiobacillus sp. JGI SC39-D10 Genome sequencing
Study Abstract
  
SRA Study Id SRP088622  (Link to NCBI )
Study Title Caulobacteraceae bacterium JGI SC39-D6 Genome sequencing
Study Abstract
  
SRA Study Id SRP104238  (Link to NCBI )
Study Title Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014 metagenome
Study Abstract
  
SRA Study Id SRP104231  (Link to NCBI )
Study Title Freshwater microbial communities in response to fracking from Pennsylvania, USA - Allegheny Zone_MetaG_DW_15 metagenome
Study Abstract
  
SRA Study Id SRP104233  (Link to NCBI )
Study Title Freshwater microbial communities from Pennsylvania, USA, analyzing microbe dynamics in response to fracking - TARM_MetaG_T_14 metagenome
Study Abstract
  
SRA Study Id SRP088633  (Link to NCBI )
Study Title Kiloniellales bacterium JGI SC39-B19 Genome sequencing
Study Abstract
  
SRA Study Id SRP148061  (Link to NCBI )
Study Title Idiomarina abyssalis 017G.2 genome sequencing
Study Abstract
  
SRA Study Id SRP104240  (Link to NCBI )
Study Title Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaT_ABR_2013 metatranscriptome
Study Abstract
  
SRA Study Id SRP148069  (Link to NCBI )
Study Title Idiomarina tainanensis 86_o genome sequencing
Study Abstract
  
SRA Study Id SRP148065  (Link to NCBI )
Study Title Idiomarina maritima 125B1 genome sequencing
Study Abstract
  
SRA Study Id SRP148064  (Link to NCBI )
Study Title Halomonas xianhensis 6_TX genome sequencing
Study Abstract
  
SRA Study Id SRP148063  (Link to NCBI )
Study Title Halomonas ventosae 1_TX genome sequencing
Study Abstract
  
SRA Study Id SRP145843  (Link to NCBI )
Study Title Metatranscriptome of freshwater microbial communities from Pennsylvania, United States - DR:GLUT
Study Abstract
  
SRA Study Id SRP088449  (Link to NCBI )
Study Title Hydrogenophaga sp. JGI SC37-D6 Genome sequencing
Study Abstract
  
SRA Study Id SRP137382  (Link to NCBI )
Study Title Freshwater microbial communities from Pennsylvania, USA, analyzing microbe dynamics in response to fracking - TARM_MetaG_T3_14 metagenome
Study Abstract
  
SRA Study Id SRP088447  (Link to NCBI )
Study Title bacterium JGI SC37-C12 Genome sequencing
Study Abstract
  
SRA Study Id SRP145841  (Link to NCBI )
Study Title Marinobacter hydrocarbonoclasticus 105B genome sequencing
Study Abstract
  
SRA Study Id SRP145842  (Link to NCBI )
Study Title Marinilabilia salmonicolor 160A genome sequencing
Study Abstract
  
SRA Study Id SRP155090  (Link to NCBI )
Study Title Paenibacillus taichungensis DB-4 genome sequencing
Study Abstract
  
SRA Study Id SRP145840  (Link to NCBI )
Study Title Marinobacter hydrocarbonoclasticus 114E_o genome sequencing
Study Abstract
  
SRA Study Id SRP155095  (Link to NCBI )
Study Title Vibrio diazotrophicus 99A genome sequencing
Study Abstract
  
SRA Study Id SRP088440  (Link to NCBI )
Study Title bacterium JGI SC37-E21 Genome sequencing
Study Abstract
  
SRA Study Id SRP164129  (Link to NCBI )
Study Title Freshwater microbial communities from Pennsylvania, USA, analyzing microbe dynamics in response to fracking - TARM_MetaG_T3A_14 metagenome
Study Abstract
  
SRA Study Id SRP104259  (Link to NCBI )
Study Title Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 metagenome
Study Abstract
  
SRA Study Id SRP104254  (Link to NCBI )
Study Title Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012 metagenome
Study Abstract
  
SRA Study Id SRP104253  (Link to NCBI )
Study Title Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014 metagenome
Study Abstract
  
SRA Study Id SRP104252  (Link to NCBI )
Study Title Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 metagenome
Study Abstract
  
SRA Study Id SRP148036  (Link to NCBI )
Study Title Idiomarina aquatica 18_TX genome sequencing
Study Abstract
  
SRA Study Id SRP148034  (Link to NCBI )
Study Title Idiomarina loihiensis H2.2 genome sequencing
Study Abstract
  
SRA Study Id SRP148033  (Link to NCBI )
Study Title Chromohalobacter salexigens 40a_TX genome sequencing
Study Abstract
  
SRA Study Id SRP088618  (Link to NCBI )
Study Title Ancylobacter sp. JGI SC39-N9 Genome sequencing
Study Abstract
  
SRA Study Id SRP123729  (Link to NCBI )
Study Title Hydrogenophaga sp. JGI SC37-E5 Genome sequencing
Study Abstract
  
SRA Study Id SRP088619  (Link to NCBI )
Study Title Magnetospirillum gryphiswaldense JGI SC39-F21 genome sequencing
Study Abstract
  
SRA Study Id SRP088616  (Link to NCBI )
Study Title beta proteobacterium JGI SC39-G4 Genome sequencing
Study Abstract
  
SRA Study Id SRP088617  (Link to NCBI )
Study Title Rhizobiaceae bacterium JGI SC39-K5 Genome sequencing
Study Abstract
  
SRA Study Id SRP088450  (Link to NCBI )
Study Title bacterium JGI SC37-K22 Genome sequencing
Study Abstract
  
SRA Study Id SRP155081  (Link to NCBI )
Study Title Paenibacillus pabuli NG-13 genome sequencing
Study Abstract
  
SRA Study Id SRP155083  (Link to NCBI )
Study Title Bacillus subtilis 140B genome sequencing
Study Abstract
  
SRA Study Id SRP163939  (Link to NCBI )
Study Title Freshwater microbial communities from Pennsylvania, USA, analyzing microbe dynamics in response to fracking - TARM_MetaG_T2_14 metagenome
Study Abstract
  
Legacy ER Study ID
Legacy GOLD ID
Added By Regina Lamendella on 2015-06-11
Last Modified By JGI automated process on 2019-06-18
PI Regina Lamendella
Description Systems Biology Approach to study microbial community dynamics in response to fracking for environmental monitoring
Relevance Environmental
Bioremediation
Study Information Link
Study Information Visibility Public
Metagenomic Study Yes
Publication
Is GEBA No
Is HMP No
ECOSYSTEM CLASSIFICATION
Ecosystem Environmental
Ecosystem Category Aquatic
Ecosystem Type Sediment
Ecosystem Subtype Unclassified
Specific Ecosystem Unclassified
STUDY COMPOSITION
Number of Biosamples 40
Number of Organisms 137
Number of Seq Projects 177
Number of Analysis Projects 160
Number of Related Studies 0

 

 

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