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Study

Study Name: Aquatic microbiome from duckweeds obtained from Rutgers Duckweed Stock Cooperative (RDSC)

Projects

Biosamples

Organisms

Biosamples: 32 Seq. Projects: 69
STUDY INFORMATION
GOLD Study ID Gs0114374
Study Name Aquatic microbiome from duckweeds obtained from Rutgers Duckweed Stock Cooperative (RDSC)
Other Names
NCBI Umbrella Bioproject Name
NCBI Umbrella Bioproject Accession
SRA Studies
SRA Study Id SRP085654  (Link to NCBI )
Study Title Microbacterium sp. RU370.1 genome sequencing
Study Abstract
  
SRA Study Id SRP085653  (Link to NCBI )
Study Title Bacillus sp. RU9509.4 genome sequencing
Study Abstract
  
SRA Study Id SRP195003  (Link to NCBI )
Study Title Metatranscriptome of plant-associated microbial communities from Arabidopsis thaliana in University of Tennessee, Knoxville, TN, United States - Col_C
Study Abstract
  
SRA Study Id SRP097467  (Link to NCBI )
Study Title Bacillus cereus RU36C genome sequencing
Study Abstract
  
SRA Study Id SRP097566  (Link to NCBI )
Study Title Rhodanobacter sp. TND4EL1 Genome sequencing
Study Abstract
  
SRA Study Id SRP097567  (Link to NCBI )
Study Title Pseudomonas alcaligenes RU38D genome sequencing
Study Abstract
  
SRA Study Id SRP097545  (Link to NCBI )
Study Title Bacillus subtilis RU36A genome sequencing
Study Abstract
  
SRA Study Id SRP097568  (Link to NCBI )
Study Title Rhodanobacter sp. TND4FL3 Genome sequencing
Study Abstract
  
SRA Study Id SRP097547  (Link to NCBI )
Study Title Bosea sp. TND4EK4 Genome sequencing
Study Abstract
  
SRA Study Id SRP097569  (Link to NCBI )
Study Title Rhodanobacter sp. TND4FH1 Genome sequencing
Study Abstract
  
SRA Study Id SRP097548  (Link to NCBI )
Study Title Chryseobacterium sp. RU37D Genome sequencing
Study Abstract
  
SRA Study Id SRP097549  (Link to NCBI )
Study Title Paenibacillus sp. RU4X Genome sequencing
Study Abstract
  
SRA Study Id SRP097461  (Link to NCBI )
Study Title Aeromonas sp. RU34C Genome sequencing
Study Abstract
  
SRA Study Id SRP097560  (Link to NCBI )
Study Title Pseudomonas alcaligenes RU36E genome sequencing
Study Abstract
  
SRA Study Id SRP097561  (Link to NCBI )
Study Title Rhizobium sp. RU36D Genome sequencing
Study Abstract
  
SRA Study Id SRP097462  (Link to NCBI )
Study Title Azospirillum sp. RU37A Genome sequencing
Study Abstract
  
SRA Study Id SRP097562  (Link to NCBI )
Study Title Rhizobium sp. RU33A Genome sequencing
Study Abstract
  
SRA Study Id SRP097541  (Link to NCBI )
Study Title Bacillus sp. RU2C Genome sequencing
Study Abstract
  
SRA Study Id SRP097563  (Link to NCBI )
Study Title Rhodanobacter sp. TND4EH1 Genome sequencing
Study Abstract
  
SRA Study Id SRP097464  (Link to NCBI )
Study Title Aeromonas sp. RU39B Genome sequencing
Study Abstract
  
SRA Study Id SRP097564  (Link to NCBI )
Study Title Rhizobium sp. RU20A Genome sequencing
Study Abstract
  
SRA Study Id SRP097465  (Link to NCBI )
Study Title Bacillus simplex RUG2-6 genome sequencing
Study Abstract
  
SRA Study Id SRP097542  (Link to NCBI )
Study Title Bacillus sp. RUPDJ Genome sequencing
Study Abstract
  
SRA Study Id SRP097565  (Link to NCBI )
Study Title Rhizobium sp. RU35A Genome sequencing
Study Abstract
  
SRA Study Id SRP097466  (Link to NCBI )
Study Title Azospirillum sp. RU38E Genome sequencing
Study Abstract
  
SRA Study Id SRP097543  (Link to NCBI )
Study Title Bacillus sp. RUTrin4 Genome sequencing
Study Abstract
  
SRA Study Id SRP256759  (Link to NCBI )
Study Title Metatranscriptome of plant-associated microbial communities from Arabidopsis thaliana in University of Tennessee, Knoxville, TN, United States - Col_370_1
Study Abstract
  
SRA Study Id SRP097555  (Link to NCBI )
Study Title Paenibacillus sp. RU26A Genome sequencing
Study Abstract
  
SRA Study Id SRP097556  (Link to NCBI )
Study Title Chryseobacterium sp. RU33C Genome sequencing
Study Abstract
  
SRA Study Id SRP097557  (Link to NCBI )
Study Title Microbacterium sp. RU33B Genome sequencing
Study Abstract
  
SRA Study Id SRP097558  (Link to NCBI )
Study Title Paenibacillus sp. RU5M Genome sequencing
Study Abstract
  
SRA Study Id SRP097459  (Link to NCBI )
Study Title Aeromonas hydrophilia RU34A genome sequencing
Study Abstract
  
SRA Study Id SRP097559  (Link to NCBI )
Study Title Pseudacidovorax sp. RU35E Genome sequencing
Study Abstract
  
SRA Study Id SRP097538  (Link to NCBI )
Study Title Bacillus sp. RU27A Genome sequencing
Study Abstract
  
SRA Study Id SRP097539  (Link to NCBI )
Study Title Aeromonas veroni RU31B genome sequencing
Study Abstract
  
SRA Study Id SRP112356  (Link to NCBI )
Study Title Paenibacillus sp. RU5A Genome sequencing
Study Abstract
  
SRA Study Id SRP097550  (Link to NCBI )
Study Title Janthinobacterium sp. TND4EL3 Genome sequencing
Study Abstract
  
SRA Study Id SRP097551  (Link to NCBI )
Study Title Microbacterium sp. RU1D Genome sequencing
Study Abstract
  
SRA Study Id SRP097552  (Link to NCBI )
Study Title Paenibacillus sp. RU15A Genome sequencing
Study Abstract
  
SRA Study Id SRP097553  (Link to NCBI )
Study Title Microbacterium sp. RURRCA19A Genome sequencing
Study Abstract
  
SRA Study Id SRP097554  (Link to NCBI )
Study Title Paenibacillus sp. RU4T Genome sequencing
Study Abstract
  
Legacy ER Study ID
Legacy GOLD ID
Added By JGI automated process on 2015-02-25
Last Modified By JGI automated process on 2019-06-18
PI Sarah Lebeis
Description The goal of this study is to define the role of the microbiome in increasing duckweed biomass and extracting C, N, and P from its environment; to identify the targeted host pathways resulting in plant growth; and to examine how "pre-association" of the growth-promoting strains under controlled conditions impacts microbiome composition and function.
Relevance
Study Information Visibility Public
Metagenomic Study Yes
Publication
Is GEBA No
Is HMP No
ECOSYSTEM CLASSIFICATION
Ecosystem Host-associated
Ecosystem Category Plants
Ecosystem Type Phyllosphere
Ecosystem Subtype Unclassified
Specific Ecosystem Unclassified
STUDY COMPOSITION
Number of Biosamples 32
Number of Organisms 37
Number of Seq Projects 69
Number of Analysis Projects 101
Number of Related Studies 0

 

 

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