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Study

Study Name: Biogas fermentation microbial communities from biogas plants in Germany

Projects

Biosamples

Organisms

Biosamples: 17 Seq. Projects: 87
STUDY INFORMATION
GOLD Study ID Gs0095506
Study Name Biogas fermentation microbial communities from biogas plants in Germany
Other Names Metagenome, metatranscriptome and single cell genome sequencing to uncover the microbiology and functional potential of biogas-producing microbial communities from production-scale biogas plants
NCBI Umbrella Bioproject Name
NCBI Umbrella Bioproject ID
SRA Studies
SRA Study Id SRP115771
Study Title Verrucomicrobia bacterium JGI 000170CP_F06 Genome sequencing
Study Abstract
  
SRA Study Id SRP115770
Study Title Clostridia bacterium JGI 000170CP_B08 Genome sequencing
Study Abstract
  
SRA Study Id SRP105045
Study Title Alkaliphilus sp. JGI 000170CP_B06 Genome sequencing
Study Abstract
  
SRA Study Id SRP116828
Study Title Candidatus Cloacimonetes bacterium JGI 000176CP_F02 Genome sequencing
Study Abstract
  
SRA Study Id SRP105044
Study Title Comamonas sp. JGI 000176CP_D06 Genome sequencing
Study Abstract
  
SRA Study Id SRP105088
Study Title Spirosoma sp. JGI 000178CP_D11 Genome sequencing
Study Abstract
  
SRA Study Id SRP116829
Study Title Candidatus Saccharibacteria bacterium JGI 000176CP_C05 Genome sequencing
Study Abstract
  
SRA Study Id SRP105087
Study Title Clostridiaceae bacterium strain:JGI 000176CP_H08 Genome sequencing
Study Abstract
  
SRA Study Id SRP105043
Study Title Coprococcus sp. JGI 000170CP_C06 Genome sequencing
Study Abstract
  
SRA Study Id SRP105040
Study Title Streptococcus sp. JGI 000170CP_B05 Genome sequencing
Study Abstract
  
SRA Study Id SRP116825
Study Title Clostridium sp. JGI 000176CP_E02 Genome sequencing
Study Abstract
  
SRA Study Id SRP097187
Study Title Biogas fermentation microbial communities from Germany - Plant 1 RNA1 metatranscriptome
Study Abstract
  
SRA Study Id SRP115762
Study Title Erysipelotrichaceae bacterium JGI 000170CP_A04 Genome sequencing
Study Abstract
  
SRA Study Id SRP115761
Study Title Porphyromonadaceae bacterium JGI 000176CP_D04 Genome sequencing
Study Abstract
  
SRA Study Id SRP115760
Study Title Clostridia bacterium JGI 000176CP_H05 Genome sequencing
Study Abstract
  
SRA Study Id SRP105053
Study Title Streptococcus sp. JGI 000170CP_B07 Genome sequencing
Study Abstract
  
SRA Study Id SRP105052
Study Title Syntrophomonas sp. JGI 000170CP_G06 Genome sequencing
Study Abstract
  
SRA Study Id SRP105054
Study Title Syntrophomonas sp. JGI 000170CP_C07 Genome sequencing
Study Abstract
  
SRA Study Id SRP115766
Study Title Erysipelotrichales bacterium JGI 000170CP_H05 Genome sequencing
Study Abstract
  
SRA Study Id SRP115765
Study Title Bacteroidaceae bacterium JGI 000170CP_E07 Genome sequencing
Study Abstract
  
SRA Study Id SRP115763
Study Title Mollicutes bacterium JGI 000170CP_C05 Genome sequencing
Study Abstract
  
SRA Study Id SRP098222
Study Title Clostridiales bacterium strain:JGI 000170CP_F07 Genome sequencing
Study Abstract
  
SRA Study Id SRP098223
Study Title Clostridiaceae bacterium strain:JGI 000176CP_E08 Genome sequencing
Study Abstract
  
SRA Study Id SRP115769
Study Title Natranaerobiales bacterium JGI 000176CP_D07 Genome sequencing
Study Abstract
  
SRA Study Id SRP098224
Study Title Clostridiales bacterium strain:JGI 000176CP_B07 Genome sequencing
Study Abstract
  
SRA Study Id SRP115768
Study Title Bacteroidales bacterium JGI 000170CP_C08 Genome sequencing
Study Abstract
  
SRA Study Id SRP115767
Study Title Clostridia bacterium JGI 000176CP_B06 Genome sequencing
Study Abstract
  
SRA Study Id SRP115751
Study Title Bacteroidales bacterium JGI 000176CP_H02 Genome sequencing
Study Abstract
  
SRA Study Id SRP070719
Study Title Biogas fermentation microbial communities from Germany - Plant 2 DNA2 metagenome
Study Abstract
  
SRA Study Id SRP096994
Study Title Biogas fermentation microbial communities from Germany - Plant 3 RNA1 metatranscriptome
Study Abstract
  
SRA Study Id SRP096995
Study Title Biogas fermentation microbial communities from Germany - Plant 4 RNA1 metatranscriptome
Study Abstract
  
SRA Study Id SRP098216
Study Title Lachnospiraceae bacterium strain:JGI 000170CP_A07 Genome sequencing
Study Abstract
  
SRA Study Id SRP096996
Study Title Biogas fermentation microbial communities from Germany - Plant 4 RNA2 metatranscriptome
Study Abstract
  
SRA Study Id SRP070720
Study Title Biogas fermentation microbial communities from Germany - Plant 2 DNA1 metagenome
Study Abstract
  
SRA Study Id SRP105063
Study Title Clostridium sp. JGI 000170CP_A08 Genome sequencing
Study Abstract
  
SRA Study Id SRP070722
Study Title Biogas fermentation microbial communities from Germany - Plant 1 DNA1 metagenome
Study Abstract
  
SRA Study Id SRP115754
Study Title Clostridia bacterium JGI 000170CP_E03 Genome sequencing
Study Abstract
  
SRA Study Id SRP105062
Study Title Alkaliphilus sp. JGI 000170CP_H07 Genome sequencing
Study Abstract
  
SRA Study Id SRP115753
Study Title Erysipelotrichaceae bacterium JGI 000170CP_B03 Genome sequencing
Study Abstract
  
SRA Study Id SRP105061
Study Title Clostridium sp. JGI 000170CP_D08 Genome sequencing
Study Abstract
  
SRA Study Id SRP098210
Study Title Clostridiales bacterium strain:JGI 000170CP_A02 Genome sequencing
Study Abstract
  
SRA Study Id SRP115759
Study Title Clostridia bacterium JGI 000170CP_A05 Genome sequencing
Study Abstract
  
SRA Study Id SRP098211
Study Title Clostridiaceae bacterium strain:JGI 000170CP_H04 Genome sequencing
Study Abstract
  
SRA Study Id SRP116841
Study Title Candidatus Cloacimonetes bacterium JGI 000178CP_E11 Genome sequencing
Study Abstract
  
SRA Study Id SRP096990
Study Title Biogas fermentation microbial communities from Germany - Plant 1 RNA2 metatranscriptome
Study Abstract
  
SRA Study Id SRP115758
Study Title Verrucomicrobia bacterium JGI 000176CP_A05 Genome sequencing
Study Abstract
  
SRA Study Id SRP098212
Study Title Clostridiales bacterium strain:JGI 000170CP_G04 Genome sequencing
Study Abstract
  
SRA Study Id SRP116842
Study Title Candidatus Cloacimonetes bacterium JGI 000176CP_D08 Genome sequencing
Study Abstract
  
SRA Study Id SRP096991
Study Title Biogas fermentation microbial communities from Germany - Plant 2 RNA1 metatranscriptome
Study Abstract
  
SRA Study Id SRP096992
Study Title Biogas fermentation microbial communities from Germany - Plant 2 RNA2 metatranscriptome
Study Abstract
  
SRA Study Id SRP116843
Study Title Candidatus Saccharibacteria bacterium JGI 000176CP_E07 Genome sequencing
Study Abstract
  
SRA Study Id SRP098213
Study Title Clostridiales bacterium strain:JGI 000176CP_E06 Genome sequencing
Study Abstract
  
SRA Study Id SRP115757
Study Title Erysipelotrichaceae bacterium JGI 000170CP_H03 Genome sequencing
Study Abstract
  
SRA Study Id SRP096993
Study Title Biogas fermentation microbial communities from Germany - Plant 3 RNA2 metatranscriptome
Study Abstract
  
SRA Study Id SRP098214
Study Title Clostridiales bacterium strain:JGI 000170CP_E06 Genome sequencing
Study Abstract
  
SRA Study Id SRP115756
Study Title Erysipelotrichaceae bacterium JGI 000170CP_A03 Genome sequencing
Study Abstract
  
SRA Study Id SRP070724
Study Title Biogas fermentation microbial communities from Germany - Plant 1 DNA2 metagenome
Study Abstract
  
SRA Study Id SRP070725
Study Title Biogas fermentation microbial communities from Germany - Plant 3 DNA1 metagenome
Study Abstract
  
SRA Study Id SRP105039
Study Title Clostridium sp. JGI 000170CP_E05 Genome sequencing
Study Abstract
  
SRA Study Id SRP070728
Study Title Biogas fermentation microbial communities from Germany - Plant 4 DNA1 metagenome
Study Abstract
  
SRA Study Id SRP070727
Study Title Biogas fermentation microbial communities from Germany - Plant 4 DNA2 metagenome
Study Abstract
  
SRA Study Id SRP105038
Study Title Clostridium sp. JGI 000170CP_A06 Genome sequencing
Study Abstract
  
SRA Study Id SRP070729
Study Title Biogas fermentation microbial communities from Germany - Plant 3 DNA2 metagenome
Study Abstract
  
SRA Study Id SRP105035
Study Title Ruminococcaceae bacterium strain:JGI 000176CP_H03 Genome sequencing
Study Abstract
  
SRA Study Id SRP105078
Study Title Clostridiales bacterium strain:JGI 000176CP_G08 Genome sequencing
Study Abstract
  
SRA Study Id SRP105037
Study Title Streptococcus sp. JGI 000170CP_B04 Genome sequencing
Study Abstract
  
SRA Study Id SRP105036
Study Title Fastidiosipila sp. JGI 000176CP_A02 Genome sequencing
Study Abstract
  
SRA Study Id SRP098207
Study Title Clostridiales bacterium strain:JGI 000170CP_C03 Genome sequencing
Study Abstract
  
SRA Study Id SRP098208
Study Title Clostridiales bacterium strain:JGI 000176CP_D02 Genome sequencing
Study Abstract
  
SRA Study Id SRP116838
Study Title Candidatus Saccharibacteria bacterium JGI 000176CP_H06 Genome sequencing
Study Abstract
  
SRA Study Id SRP098209
Study Title Ruminococcaceae bacterium strain:JGI 000176CP_B03 Genome sequencing
Study Abstract
  
SRA Study Id SRP105030
Study Title Streptococcus sp. JGI 000170CP_G01 Genome sequencing
Study Abstract
  
SRA Study Id SRP105032
Study Title Clostridiaceae bacterium strain:JGI 000176CP_B01 Genome sequencing
Study Abstract
  
SRA Study Id SRP115744
Study Title Bacteroidaceae bacterium JGI 000170CP_C02 Genome sequencing
Study Abstract
  
SRA Study Id SRP116834
Study Title Streptococcus sp. JGI 000170CP_H01 Genome sequencing
Study Abstract
  
SRA Study Id SRP115743
Study Title Clostridia bacterium JGI 000170CP_H02 Genome sequencing
Study Abstract
  
SRA Study Id SRP116837
Study Title Candidatus Cloacimonetes bacterium JGI 000176CP_E05 Genome sequencing
Study Abstract
  
SRA Study Id SRP115741
Study Title Bacteroidaceae bacterium JGI 000170CP_F02 Genome sequencing
Study Abstract
  
SRA Study Id SRP116830
Study Title Candidatus Cloacimonetes bacterium JGI 000170CP_E04 Genome sequencing
Study Abstract
  
SRA Study Id SRP098200
Study Title Lachnospiraceae bacterium strain:JGI 000170CP_F01 Genome sequencing
Study Abstract
  
SRA Study Id SRP116831
Study Title Porphyromonadaceae bacterium JGI 000176CP_C01 Genome sequencing
Study Abstract
  
SRA Study Id SRP098201
Study Title Streptococcus luteciae JGI 000170CP_B01 genome sequencing
Study Abstract
  
SRA Study Id SRP116832
Study Title Syntrophomonas sp. JGI 000176CP_H01 Genome sequencing
Study Abstract
  
SRA Study Id SRP115746
Study Title Erysipelotrichaceae bacterium JGI 000170CP_G02 Genome sequencing
Study Abstract
  
SRA Study Id SRP098202
Study Title Clostridiales bacterium strain:JGI 000170CP_C01 Genome sequencing
Study Abstract
  
SRA Study Id SRP098203
Study Title Enterococcus cecorum JGI 000170CP_E01 genome sequencing
Study Abstract
  
Legacy ER Study ID 50506
Legacy GOLD ID Gm0050506
Added By Ionna Pagani on 2013-06-25
Last Modified By Supratim Mukherjee on 2016-11-28
PI Alexander Sczyrba
Description Insights into the genetic repertoire of a biogas producing microbial community and dominant individual members of the community residing in fermentation batches of production-scale biogas plants.
Relevance
Study Information Link
Study Information Visibility Public
Metagenomic Study Yes
Publication
Is GEBA No
Is HMP No
ECOSYSTEM CLASSIFICATION
Ecosystem Engineered
Ecosystem Category Biotransformation
Ecosystem Type Mixed alcohol bioreactor
Ecosystem Subtype Unclassified
Specific Ecosystem Unclassified
STUDY COMPOSITION
Number of Biosamples 17
Number of Organisms 70
Number of Seq Projects 87
Number of Analysis Projects 135
Number of Related Studies 0

 

 

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