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Study

Study Name: Biogas fermentation microbial communities from biogas plants in Germany

Projects

Biosamples

Organisms

Biosamples: 17 Seq. Projects: 87
STUDY INFORMATION
GOLD Study ID Gs0095506
Study Name Biogas fermentation microbial communities from biogas plants in Germany
Other Names Metagenome, metatranscriptome and single cell genome sequencing to uncover the microbiology and functional potential of biogas-producing microbial communities from production-scale biogas plants
NCBI Umbrella Bioproject Name
NCBI Umbrella Bioproject ID
SRA Studies
SRA Study Id SRP115771  (Link to NCBI )
Study Title Verrucomicrobia bacterium JGI 000170CP_F06 Genome sequencing
Study Abstract
  
SRA Study Id SRP115770  (Link to NCBI )
Study Title Clostridia bacterium JGI 000170CP_B08 Genome sequencing
Study Abstract
  
SRA Study Id SRP105045  (Link to NCBI )
Study Title Alkaliphilus sp. JGI 000170CP_B06 Genome sequencing
Study Abstract
  
SRA Study Id SRP116828  (Link to NCBI )
Study Title Candidatus Cloacimonetes bacterium JGI 000176CP_F02 Genome sequencing
Study Abstract
  
SRA Study Id SRP105044  (Link to NCBI )
Study Title Comamonas sp. JGI 000176CP_D06 Genome sequencing
Study Abstract
  
SRA Study Id SRP105088  (Link to NCBI )
Study Title Spirosoma sp. JGI 000178CP_D11 Genome sequencing
Study Abstract
  
SRA Study Id SRP116829  (Link to NCBI )
Study Title Candidatus Saccharibacteria bacterium JGI 000176CP_C05 Genome sequencing
Study Abstract
  
SRA Study Id SRP105087  (Link to NCBI )
Study Title Clostridiaceae bacterium strain:JGI 000176CP_H08 Genome sequencing
Study Abstract
  
SRA Study Id SRP105043  (Link to NCBI )
Study Title Coprococcus sp. JGI 000170CP_C06 Genome sequencing
Study Abstract
  
SRA Study Id SRP105040  (Link to NCBI )
Study Title Streptococcus sp. JGI 000170CP_B05 Genome sequencing
Study Abstract
  
SRA Study Id SRP116825  (Link to NCBI )
Study Title Clostridium sp. JGI 000176CP_E02 Genome sequencing
Study Abstract
  
SRA Study Id SRP097187  (Link to NCBI )
Study Title Biogas fermentation microbial communities from Germany - Plant 1 RNA1 metatranscriptome
Study Abstract
  
SRA Study Id SRP115762  (Link to NCBI )
Study Title Erysipelotrichaceae bacterium JGI 000170CP_A04 Genome sequencing
Study Abstract
  
SRA Study Id SRP115761  (Link to NCBI )
Study Title Porphyromonadaceae bacterium JGI 000176CP_D04 Genome sequencing
Study Abstract
  
SRA Study Id SRP115760  (Link to NCBI )
Study Title Clostridia bacterium JGI 000176CP_H05 Genome sequencing
Study Abstract
  
SRA Study Id SRP105053  (Link to NCBI )
Study Title Streptococcus sp. JGI 000170CP_B07 Genome sequencing
Study Abstract
  
SRA Study Id SRP105052  (Link to NCBI )
Study Title Syntrophomonas sp. JGI 000170CP_G06 Genome sequencing
Study Abstract
  
SRA Study Id SRP105054  (Link to NCBI )
Study Title Syntrophomonas sp. JGI 000170CP_C07 Genome sequencing
Study Abstract
  
SRA Study Id SRP115766  (Link to NCBI )
Study Title Erysipelotrichales bacterium JGI 000170CP_H05 Genome sequencing
Study Abstract
  
SRA Study Id SRP115765  (Link to NCBI )
Study Title Bacteroidaceae bacterium JGI 000170CP_E07 Genome sequencing
Study Abstract
  
SRA Study Id SRP115763  (Link to NCBI )
Study Title Mollicutes bacterium JGI 000170CP_C05 Genome sequencing
Study Abstract
  
SRA Study Id SRP098222  (Link to NCBI )
Study Title Clostridiales bacterium strain:JGI 000170CP_F07 Genome sequencing
Study Abstract
  
SRA Study Id SRP098223  (Link to NCBI )
Study Title Clostridiaceae bacterium strain:JGI 000176CP_E08 Genome sequencing
Study Abstract
  
SRA Study Id SRP115769  (Link to NCBI )
Study Title Natranaerobiales bacterium JGI 000176CP_D07 Genome sequencing
Study Abstract
  
SRA Study Id SRP098224  (Link to NCBI )
Study Title Clostridiales bacterium strain:JGI 000176CP_B07 Genome sequencing
Study Abstract
  
SRA Study Id SRP115768  (Link to NCBI )
Study Title Bacteroidales bacterium JGI 000170CP_C08 Genome sequencing
Study Abstract
  
SRA Study Id SRP115767  (Link to NCBI )
Study Title Clostridia bacterium JGI 000176CP_B06 Genome sequencing
Study Abstract
  
SRA Study Id SRP115751  (Link to NCBI )
Study Title Bacteroidales bacterium JGI 000176CP_H02 Genome sequencing
Study Abstract
  
SRA Study Id SRP070719  (Link to NCBI )
Study Title Biogas fermentation microbial communities from Germany - Plant 2 DNA2 metagenome
Study Abstract
  
SRA Study Id SRP096994  (Link to NCBI )
Study Title Biogas fermentation microbial communities from Germany - Plant 3 RNA1 metatranscriptome
Study Abstract
  
SRA Study Id SRP096995  (Link to NCBI )
Study Title Biogas fermentation microbial communities from Germany - Plant 4 RNA1 metatranscriptome
Study Abstract
  
SRA Study Id SRP098216  (Link to NCBI )
Study Title Lachnospiraceae bacterium strain:JGI 000170CP_A07 Genome sequencing
Study Abstract
  
SRA Study Id SRP096996  (Link to NCBI )
Study Title Biogas fermentation microbial communities from Germany - Plant 4 RNA2 metatranscriptome
Study Abstract
  
SRA Study Id SRP070720  (Link to NCBI )
Study Title Biogas fermentation microbial communities from Germany - Plant 2 DNA1 metagenome
Study Abstract
  
SRA Study Id SRP105063  (Link to NCBI )
Study Title Clostridium sp. JGI 000170CP_A08 Genome sequencing
Study Abstract
  
SRA Study Id SRP070722  (Link to NCBI )
Study Title Biogas fermentation microbial communities from Germany - Plant 1 DNA1 metagenome
Study Abstract
  
SRA Study Id SRP115754  (Link to NCBI )
Study Title Clostridia bacterium JGI 000170CP_E03 Genome sequencing
Study Abstract
  
SRA Study Id SRP105062  (Link to NCBI )
Study Title Alkaliphilus sp. JGI 000170CP_H07 Genome sequencing
Study Abstract
  
SRA Study Id SRP115753  (Link to NCBI )
Study Title Erysipelotrichaceae bacterium JGI 000170CP_B03 Genome sequencing
Study Abstract
  
SRA Study Id SRP105061  (Link to NCBI )
Study Title Clostridium sp. JGI 000170CP_D08 Genome sequencing
Study Abstract
  
SRA Study Id SRP098210  (Link to NCBI )
Study Title Clostridiales bacterium strain:JGI 000170CP_A02 Genome sequencing
Study Abstract
  
SRA Study Id SRP115759  (Link to NCBI )
Study Title Clostridia bacterium JGI 000170CP_A05 Genome sequencing
Study Abstract
  
SRA Study Id SRP098211  (Link to NCBI )
Study Title Clostridiaceae bacterium strain:JGI 000170CP_H04 Genome sequencing
Study Abstract
  
SRA Study Id SRP116841  (Link to NCBI )
Study Title Candidatus Cloacimonetes bacterium JGI 000178CP_E11 Genome sequencing
Study Abstract
  
SRA Study Id SRP096990  (Link to NCBI )
Study Title Biogas fermentation microbial communities from Germany - Plant 1 RNA2 metatranscriptome
Study Abstract
  
SRA Study Id SRP115758  (Link to NCBI )
Study Title Verrucomicrobia bacterium JGI 000176CP_A05 Genome sequencing
Study Abstract
  
SRA Study Id SRP098212  (Link to NCBI )
Study Title Clostridiales bacterium strain:JGI 000170CP_G04 Genome sequencing
Study Abstract
  
SRA Study Id SRP116842  (Link to NCBI )
Study Title Candidatus Cloacimonetes bacterium JGI 000176CP_D08 Genome sequencing
Study Abstract
  
SRA Study Id SRP096991  (Link to NCBI )
Study Title Biogas fermentation microbial communities from Germany - Plant 2 RNA1 metatranscriptome
Study Abstract
  
SRA Study Id SRP096992  (Link to NCBI )
Study Title Biogas fermentation microbial communities from Germany - Plant 2 RNA2 metatranscriptome
Study Abstract
  
SRA Study Id SRP116843  (Link to NCBI )
Study Title Candidatus Saccharibacteria bacterium JGI 000176CP_E07 Genome sequencing
Study Abstract
  
SRA Study Id SRP098213  (Link to NCBI )
Study Title Clostridiales bacterium strain:JGI 000176CP_E06 Genome sequencing
Study Abstract
  
SRA Study Id SRP115757  (Link to NCBI )
Study Title Erysipelotrichaceae bacterium JGI 000170CP_H03 Genome sequencing
Study Abstract
  
SRA Study Id SRP096993  (Link to NCBI )
Study Title Biogas fermentation microbial communities from Germany - Plant 3 RNA2 metatranscriptome
Study Abstract
  
SRA Study Id SRP098214  (Link to NCBI )
Study Title Clostridiales bacterium strain:JGI 000170CP_E06 Genome sequencing
Study Abstract
  
SRA Study Id SRP115756  (Link to NCBI )
Study Title Erysipelotrichaceae bacterium JGI 000170CP_A03 Genome sequencing
Study Abstract
  
SRA Study Id SRP070724  (Link to NCBI )
Study Title Biogas fermentation microbial communities from Germany - Plant 1 DNA2 metagenome
Study Abstract
  
SRA Study Id SRP070725  (Link to NCBI )
Study Title Biogas fermentation microbial communities from Germany - Plant 3 DNA1 metagenome
Study Abstract
  
SRA Study Id SRP105039  (Link to NCBI )
Study Title Clostridium sp. JGI 000170CP_E05 Genome sequencing
Study Abstract
  
SRA Study Id SRP070728  (Link to NCBI )
Study Title Biogas fermentation microbial communities from Germany - Plant 4 DNA1 metagenome
Study Abstract
  
SRA Study Id SRP070727  (Link to NCBI )
Study Title Biogas fermentation microbial communities from Germany - Plant 4 DNA2 metagenome
Study Abstract
  
SRA Study Id SRP105038  (Link to NCBI )
Study Title Clostridium sp. JGI 000170CP_A06 Genome sequencing
Study Abstract
  
SRA Study Id SRP070729  (Link to NCBI )
Study Title Biogas fermentation microbial communities from Germany - Plant 3 DNA2 metagenome
Study Abstract
  
SRA Study Id SRP105035  (Link to NCBI )
Study Title Ruminococcaceae bacterium strain:JGI 000176CP_H03 Genome sequencing
Study Abstract
  
SRA Study Id SRP105078  (Link to NCBI )
Study Title Clostridiales bacterium strain:JGI 000176CP_G08 Genome sequencing
Study Abstract
  
SRA Study Id SRP105037  (Link to NCBI )
Study Title Streptococcus sp. JGI 000170CP_B04 Genome sequencing
Study Abstract
  
SRA Study Id SRP105036  (Link to NCBI )
Study Title Fastidiosipila sp. JGI 000176CP_A02 Genome sequencing
Study Abstract
  
SRA Study Id SRP098207  (Link to NCBI )
Study Title Clostridiales bacterium strain:JGI 000170CP_C03 Genome sequencing
Study Abstract
  
SRA Study Id SRP098208  (Link to NCBI )
Study Title Clostridiales bacterium strain:JGI 000176CP_D02 Genome sequencing
Study Abstract
  
SRA Study Id SRP116838  (Link to NCBI )
Study Title Candidatus Saccharibacteria bacterium JGI 000176CP_H06 Genome sequencing
Study Abstract
  
SRA Study Id SRP098209  (Link to NCBI )
Study Title Ruminococcaceae bacterium strain:JGI 000176CP_B03 Genome sequencing
Study Abstract
  
SRA Study Id SRP105030  (Link to NCBI )
Study Title Streptococcus sp. JGI 000170CP_G01 Genome sequencing
Study Abstract
  
SRA Study Id SRP105032  (Link to NCBI )
Study Title Clostridiaceae bacterium strain:JGI 000176CP_B01 Genome sequencing
Study Abstract
  
SRA Study Id SRP115744  (Link to NCBI )
Study Title Bacteroidaceae bacterium JGI 000170CP_C02 Genome sequencing
Study Abstract
  
SRA Study Id SRP116834  (Link to NCBI )
Study Title Streptococcus sp. JGI 000170CP_H01 Genome sequencing
Study Abstract
  
SRA Study Id SRP115743  (Link to NCBI )
Study Title Clostridia bacterium JGI 000170CP_H02 Genome sequencing
Study Abstract
  
SRA Study Id SRP116837  (Link to NCBI )
Study Title Candidatus Cloacimonetes bacterium JGI 000176CP_E05 Genome sequencing
Study Abstract
  
SRA Study Id SRP115741  (Link to NCBI )
Study Title Bacteroidaceae bacterium JGI 000170CP_F02 Genome sequencing
Study Abstract
  
SRA Study Id SRP116830  (Link to NCBI )
Study Title Candidatus Cloacimonetes bacterium JGI 000170CP_E04 Genome sequencing
Study Abstract
  
SRA Study Id SRP098200  (Link to NCBI )
Study Title Lachnospiraceae bacterium strain:JGI 000170CP_F01 Genome sequencing
Study Abstract
  
SRA Study Id SRP116831  (Link to NCBI )
Study Title Porphyromonadaceae bacterium JGI 000176CP_C01 Genome sequencing
Study Abstract
  
SRA Study Id SRP098201  (Link to NCBI )
Study Title Streptococcus luteciae JGI 000170CP_B01 genome sequencing
Study Abstract
  
SRA Study Id SRP116832  (Link to NCBI )
Study Title Syntrophomonas sp. JGI 000176CP_H01 Genome sequencing
Study Abstract
  
SRA Study Id SRP115746  (Link to NCBI )
Study Title Erysipelotrichaceae bacterium JGI 000170CP_G02 Genome sequencing
Study Abstract
  
SRA Study Id SRP098202  (Link to NCBI )
Study Title Clostridiales bacterium strain:JGI 000170CP_C01 Genome sequencing
Study Abstract
  
SRA Study Id SRP098203  (Link to NCBI )
Study Title Enterococcus cecorum JGI 000170CP_E01 genome sequencing
Study Abstract
  
Legacy ER Study ID 50506
Legacy GOLD ID Gm0050506
Added By Ionna Pagani on 2013-06-25
Last Modified By Supratim Mukherjee on 2016-11-28
PI Alexander Sczyrba
Description Insights into the genetic repertoire of a biogas producing microbial community and dominant individual members of the community residing in fermentation batches of production-scale biogas plants.
Relevance
Study Information Link
Study Information Visibility Public
Metagenomic Study Yes
Publication
Is GEBA No
Is HMP No
ECOSYSTEM CLASSIFICATION
Ecosystem Engineered
Ecosystem Category Biotransformation
Ecosystem Type Mixed alcohol bioreactor
Ecosystem Subtype Unclassified
Specific Ecosystem Unclassified
STUDY COMPOSITION
Number of Biosamples 17
Number of Organisms 70
Number of Seq Projects 87
Number of Analysis Projects 151
Number of Related Studies 0

 

 

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