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Study

Study Name: Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico

Projects

Biosamples

Organisms

Biosamples: 126 Seq. Projects: 130
STUDY INFORMATION
GOLD Study ID Gs0067861
Study Name Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico
Other Names Microbial Interactions in Extremophilic Mat Communities
NCBI Umbrella Bioproject Name
NCBI Umbrella Bioproject Accession
SRA Studies
SRA Study Id SRP099281  (Link to NCBI )
Study Title Hot spring sediment microbial communities from Joseph''s Coat, Yellowstone National Park, USA - JC3_ASED metagenome
Study Abstract
  
SRA Study Id SRP098030  (Link to NCBI )
Study Title Iron oxide microbial mat communities from Yellowstone National Park, Wyoming, USA - BED_top_diel_T=8 metaT metatranscriptome
Study Abstract
  
SRA Study Id SRP100355  (Link to NCBI )
Study Title Freshwater microbial communities from Yellowstone National Park, Wyoming, USA - Fairy Falls B (FF_Mn_B) MetaG metagenome
Study Abstract
  
SRA Study Id SRP100234  (Link to NCBI )
Study Title Hypersaline microbial mat communities from Hot Lake, Washington, USA - Hot Lake Consortium UCC-R28 metagenome
Study Abstract
  
SRA Study Id SRP100232  (Link to NCBI )
Study Title Hypersaline microbial mat communities from Hot Lake, Washington, USA - Hot Lake Consortium UCC-RE metagenome
Study Abstract
  
SRA Study Id SRP100358  (Link to NCBI )
Study Title Freshwater microbial communities from Yellowstone National Park, Wyoming, USA - Fairy Falls C (FF_Mn_C) metagenome
Study Abstract
  
SRA Study Id SRP100236  (Link to NCBI )
Study Title Hypersaline microbial mat communities from Hot Lake, Washington, USA - Hot Lake Consortium UCC-SLE metagenome
Study Abstract
  
SRA Study Id SRP100235  (Link to NCBI )
Study Title Hypersaline microbial mat communities from Hot Lake, Washington, USA - Hot Lake Consortium UCC-SL28 metagenome
Study Abstract
  
SRA Study Id SRP099286  (Link to NCBI )
Study Title Sulfidic aquatic microbial communities from Washburn Spring, Yellowstone National Park, USA - WS metagenome
Study Abstract
  
SRA Study Id SRP098031  (Link to NCBI )
Study Title Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - OCT_C_2 metaT metatranscriptome
Study Abstract
  
SRA Study Id SRP098032  (Link to NCBI )
Study Title Iron oxide microbial mat communities from Yellowstone National Park, Wyoming, USA - BED_top_diel_T=3 metaT metatranscriptome
Study Abstract
  
SRA Study Id SRP099288  (Link to NCBI )
Study Title Hot spring microbial communities from Joseph''s Coat, Yellowstone National Park, USA - JC2_E metagenome
Study Abstract
  
SRA Study Id SRP098033  (Link to NCBI )
Study Title Iron oxide microbial mat communities from Yellowstone National Park, Wyoming, USA - BED_top_diel_T=7 metaT metatranscriptome
Study Abstract
  
SRA Study Id SRP099287  (Link to NCBI )
Study Title Hot spring and microbial mat streamer communities from Octopus Spring Streamers, Yellowstone National Park, USA - OCT_B metagenome
Study Abstract
  
SRA Study Id SRP098034  (Link to NCBI )
Study Title Iron oxide microbial mat communities from Yellowstone National Park, Wyoming, USA - BED_top_diel_T=5 metaT metatranscriptome
Study Abstract
  
SRA Study Id SRP098035  (Link to NCBI )
Study Title Iron oxide microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_C_top_diel_T=5 metaT metatranscriptome
Study Abstract
  
SRA Study Id SRP099289  (Link to NCBI )
Study Title Hypoxic/sulfidic aquatic microbial communities from Monarch Geyser, Yellowstone National Park, USA - MG metagenome
Study Abstract
  
SRA Study Id SRP097860  (Link to NCBI )
Study Title Hypersaline microbial mat communities from Hot Lake, Washington, USA - Hot Lake Consortium UCC-LE metagenome
Study Abstract
  
SRA Study Id SRP097862  (Link to NCBI )
Study Title Hypersaline microbial mat communities from Hot Lake, Washington, USA - Hot Lake Consortium UCC-L28 metagenome
Study Abstract
  
SRA Study Id SRP120871  (Link to NCBI )
Study Title Hypersaline microbial mat communities from Hot Lake, Washington, USA - Section #5 metagenome
Study Abstract
  
SRA Study Id SRP120870  (Link to NCBI )
Study Title Hypersaline microbial mat communities from Hot Lake, Washington, USA - Section #4 metagenome
Study Abstract
  
SRA Study Id SRP118232  (Link to NCBI )
Study Title Iron oxide microbial mat communities from Yellowstone National Park, Wyoming, USA - BED_top_diel_T=1 metaT metatranscriptome
Study Abstract
  
SRA Study Id SRP100366  (Link to NCBI )
Study Title Thermal spring microbial communities from Yellowstone National Park, Wyoming, USA - Perpetual Spouter B (PS_B) MetaG metagenome
Study Abstract
  
SRA Study Id SRP100363  (Link to NCBI )
Study Title Thermal spring microbial communities from Yellowstone National Park, Wyoming, USA - Perpetual Spouter A (PS_A) MetaG metagenome
Study Abstract
  
SRA Study Id SRP100369  (Link to NCBI )
Study Title Archaeal communities from Yellowstone National Park, Wyoming, USA - Archaeal consortia 1 (NAG2) MetaG metagenome
Study Abstract
  
SRA Study Id SRP100367  (Link to NCBI )
Study Title Archaeal communities from Yellowstone National Park, Wyoming, USA - Perpetual Spouter C (PS_C) MetaG metagenome
Study Abstract
  
SRA Study Id SRP098029  (Link to NCBI )
Study Title Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - OCT_C_1 metaT metatranscriptome
Study Abstract
  
SRA Study Id SRP108447  (Link to NCBI )
Study Title Hot spring microbial communities from Elkhorn Slough, Monterey Bay, USA - MD2A metagenome
Study Abstract
  
SRA Study Id SRP098026  (Link to NCBI )
Study Title Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - OCT_B_1 metaT metatranscriptome
Study Abstract
  
SRA Study Id SRP098027  (Link to NCBI )
Study Title Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - OCT_B_2 metaT metatranscriptome
Study Abstract
  
SRA Study Id SRP100338  (Link to NCBI )
Study Title Thermal spring microbial communities from Beowulf Spring, Yellowstone National Park, Wyoming, USA - Beowulf (BE_D) metatranscriptome
Study Abstract
  
SRA Study Id SRP086504  (Link to NCBI )
Study Title Rhizobiales bacterium HL-109 Genome sequencing
Study Abstract
  
SRA Study Id SRP086506  (Link to NCBI )
Study Title Halomonas sp. HL-4 genome sequencing
Study Abstract
  
SRA Study Id SRP100332  (Link to NCBI )
Study Title Hypersaline microbial mat communities from Yellowstone National Park, Wyoming, USA - Beowulf (BE_B) metatranscriptome
Study Abstract
  
SRA Study Id SRP120705  (Link to NCBI )
Study Title Hot spring microbial communities from Elkhorn Slough, Monterey Bay, USA - MR2A metatranscriptome
Study Abstract
  
SRA Study Id SRP100375  (Link to NCBI )
Study Title Archaeal communities from Yellowstone National Park, Wyoming, USA - Archaeal consortia 3 (5D1_ECH) MetaG metagenome
Study Abstract
  
SRA Study Id SRP100374  (Link to NCBI )
Study Title Archaeal communities from Yellowstone National Park, Wyoming, USA - Archaeal consortia 2 (NAG2) MetaG metagenome
Study Abstract
  
SRA Study Id SRP120703  (Link to NCBI )
Study Title Hot spring microbial communities from Elkhorn Slough, Monterey Bay, USA - MR6A metatranscriptome
Study Abstract
  
SRA Study Id SRP120868  (Link to NCBI )
Study Title Hypersaline microbial mat communities from Hot Lake, Washington, USA - Section #1 metagenome
Study Abstract
  
SRA Study Id SRP120702  (Link to NCBI )
Study Title Hot spring microbial communities from Elkhorn Slough, Monterey Bay, USA - CR6B metatranscriptome
Study Abstract
  
SRA Study Id SRP120867  (Link to NCBI )
Study Title Hypersaline microbial mat communities from Hot Lake, Washington, USA - Section #3 metagenome
Study Abstract
  
SRA Study Id SRP120866  (Link to NCBI )
Study Title Hypersaline microbial mat communities from Hot Lake, Washington, USA - Section #2 metagenome
Study Abstract
  
SRA Study Id SRP100336  (Link to NCBI )
Study Title Hypersaline microbial mat communities from Yellowstone National Park, Wyoming, USA - Narrow Gauge (NG_F) metatranscriptome
Study Abstract
  
SRA Study Id SRP100334  (Link to NCBI )
Study Title Hypersaline microbial mat communities from Yellowstone National Park, Wyoming, USA - Grendel (GRN_C) metatranscriptome
Study Abstract
  
SRA Study Id SRP183602  (Link to NCBI )
Study Title Iron oxide microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_B_top_diel_T=5 metaT metatranscriptome
Study Abstract
  
SRA Study Id SRP183603  (Link to NCBI )
Study Title Iron oxide microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_B_top_diel_T=1 metaT metatranscriptome
Study Abstract
  
SRA Study Id SRP121225  (Link to NCBI )
Study Title Hot spring microbial streamer communities from Conch Spring, Yellowstone National Park, USA - CON_C metagenome
Study Abstract
  
SRA Study Id SRP086514  (Link to NCBI )
Study Title Erythrobacter sp. hl-111 Genome sequencing
Study Abstract
  
SRA Study Id SRP121224  (Link to NCBI )
Study Title Ferric oxide microbial mat and aquatic microbial communities from Rainbow Spring, Yellowstone National Park, USA - RS3B metagenome
Study Abstract
  
SRA Study Id SRP120970  (Link to NCBI )
Study Title Microbial mat communities from Grendel Spring, Yellowstone National Park, USA metatranscriptome
Study Abstract
  
SRA Study Id SRP120695  (Link to NCBI )
Study Title Microbial mat communities from Octopus Spring, Yellowstone National Park, USA metatranscriptome
Study Abstract
  
SRA Study Id SRP100349  (Link to NCBI )
Study Title Ferric microbial mat communities from Yellowstone National Park, Wyoming, USA - One Hundred Spring Plain (OSP_B) metatranscriptome
Study Abstract
  
SRA Study Id SRP120694  (Link to NCBI )
Study Title Microbial mat communities from Liberty Cap, Yellowstone National Park, USA metatranscriptome
Study Abstract
  
SRA Study Id SRP086518  (Link to NCBI )
Study Title Halomonas sp. HL-93 genome sequencing
Study Abstract
  
SRA Study Id SRP100345  (Link to NCBI )
Study Title Acidic geyser microbial communities from Echinus Geyser, Yellowstone National Park, Wyoming, USA - Echinus (ECH_B) metatranscriptome
Study Abstract
  
SRA Study Id SRP183613  (Link to NCBI )
Study Title Iron oxide microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_C_top_diel_T=7 metaT metatranscriptome
Study Abstract
  
SRA Study Id SRP183614  (Link to NCBI )
Study Title Iron oxide microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_C_top_diel_T=1 metaT metatranscriptome
Study Abstract
  
SRA Study Id SRP099653  (Link to NCBI )
Study Title Hypersaline microbial mat communities from Elkhorn Slough, Monterey Bay, California, USA - CR8A/B metatranscriptome
Study Abstract
  
Legacy ER Study ID 22861
Legacy GOLD ID Gm00369
Added By Ionna Pagani on 2012-02-08
Last Modified By JGI automated process on 2019-09-06
PI Jim Fredrickson
Description Microbial Interactions in Extremophilic Mat Communities
Relevance
Study Information Visibility Public
Metagenomic Study Yes
Publication
Is GEBA No
Is HMP No
ECOSYSTEM CLASSIFICATION
Ecosystem Environmental
Ecosystem Category Aquatic
Ecosystem Type Unclassified
Ecosystem Subtype Unclassified
Specific Ecosystem Unclassified
Ecosystem Path ID 3984
STUDY COMPOSITION
Number of Biosamples 126
Number of Organisms 4
Number of Seq Projects 130
Number of Analysis Projects 528
Number of Related Studies 0

 

 

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