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Study

Study Name: Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations

Projects

Biosamples

Organisms

Biosamples: 184 Seq. Projects: 184
STUDY INFORMATION
GOLD Study ID Gs0053073
Study Name Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations
Other Names Plant associated metagenomes--Microbial community diversity and host control of community assembly across model and emerging plant ecological genomics systems
NCBI Umbrella Bioproject Name
NCBI Umbrella Bioproject ID
SRA Studies
SRA Study Id SRP127876
Study Title Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.8.old.040610 metagenome
Study Abstract
  
SRA Study Id SRP127910
Study Title Unplanted soil (control) microbial communities from North Carolina - M.Soil.3.yng.040610 metagenome
Study Abstract
  
SRA Study Id SRP127877
Study Title Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.3.yng.040610 metagenome
Study Abstract
  
SRA Study Id SRP127874
Study Title Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.080610_10 metagenome
Study Abstract
  
SRA Study Id SRP127875
Study Title Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.9.old.080610 metagenome
Study Abstract
  
SRA Study Id SRP105688
Study Title Arabidopsis rhizosphere microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 metagenome
Study Abstract
  
SRA Study Id SRP105687
Study Title Arabidopsis rhizosphere microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 metagenome
Study Abstract
  
SRA Study Id SRP127878
Study Title Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.4.yng.040610 metagenome
Study Abstract
  
SRA Study Id SRP127879
Study Title Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.10.yng.090610 metagenome
Study Abstract
  
SRA Study Id SRP105684
Study Title Arabidopsis rhizosphere microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 metagenome
Study Abstract
  
SRA Study Id SRP105683
Study Title Arabidopsis rhizosphere microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 metagenome
Study Abstract
  
SRA Study Id SRP105686
Study Title Arabidopsis rhizosphere microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 metagenome
Study Abstract
  
SRA Study Id SRP105685
Study Title Arabidopsis rhizosphere microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 metagenome
Study Abstract
  
SRA Study Id SRP127872
Study Title Unplanted soil (control) microbial communities from North Carolina - M.Soil.1.old.130510 metagenome
Study Abstract
  
SRA Study Id SRP105680
Study Title Arabidopsis rhizosphere microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 metagenome
Study Abstract
  
SRA Study Id SRP127873
Study Title Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.120510 metagenome
Study Abstract
  
SRA Study Id SRP099649
Study Title Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF metagenome
Study Abstract
  
SRA Study Id SRP105682
Study Title Arabidopsis rhizosphere microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 metagenome
Study Abstract
  
SRA Study Id SRP127871
Study Title Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.3.old.270510 metagenome
Study Abstract
  
SRA Study Id SRP105681
Study Title Arabidopsis rhizosphere microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 metagenome
Study Abstract
  
SRA Study Id SRP099440
Study Title Arabidopsis rhizosphere microbial communities from the University of North Carolina, USA - metaT NBMF1_01_fullP_nobac_d1 metatranscriptome
Study Abstract
  
SRA Study Id SRP099441
Study Title Arabidopsis rhizosphere microbial communities from the University of North Carolina, USA - metaT NBMF1_04_fullP_mix3_d1 metatranscriptome
Study Abstract
  
SRA Study Id SRP099446
Study Title Arabidopsis rhizosphere microbial communities from the University of North Carolina, USA - metaT NBMF1_10_fullP_mix1_d2 metatranscriptome
Study Abstract
  
SRA Study Id SRP127904
Study Title Unplanted soil (control) microbial communities from North Carolina - M.Soil.7.yng.070610 metagenome
Study Abstract
  
SRA Study Id SRP127905
Study Title Unplanted soil (control) microbial communities from North Carolina - M.Soil.10.yng.090610 metagenome
Study Abstract
  
SRA Study Id SRP099471
Study Title Arabidopsis rhizosphere microbial communities from the University of North Carolina, USA - metaT NBMF1_09_fullP_nobac_d2 metatranscriptome
Study Abstract
  
SRA Study Id SRP127866
Study Title Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.2.old.250510 metagenome
Study Abstract
  
SRA Study Id SRP127863
Study Title Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.4.old.040610 metagenome
Study Abstract
  
SRA Study Id SRP127869
Study Title Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.7.old.040610 metagenome
Study Abstract
  
SRA Study Id SRP127902
Study Title Unplanted soil (control) microbial communities from North Carolina - M.Soil.6.yng.070610 metagenome
Study Abstract
  
SRA Study Id SRP127903
Study Title Unplanted soil (control) microbial communities from North Carolina - M.Soil.4.yng.090610 metagenome
Study Abstract
  
SRA Study Id SRP127867
Study Title Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.5.old.040610 metagenome
Study Abstract
  
SRA Study Id SRP127900
Study Title Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.4.yng.030610 metagenome
Study Abstract
  
SRA Study Id SRP127868
Study Title Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.6.old.040610 metagenome
Study Abstract
  
SRA Study Id SRP127861
Study Title Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.10.old.080610 metagenome
Study Abstract
  
SRA Study Id SRP127862
Study Title Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.2.old.130510 metagenome
Study Abstract
  
SRA Study Id SRP127860
Study Title Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.4.old.130510 metagenome
Study Abstract
  
SRA Study Id SRP099472
Study Title Arabidopsis rhizosphere microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 metatranscriptome
Study Abstract
  
SRA Study Id SRP127898
Study Title Unplanted soil (control) microbial communities from North Carolina - M.Soil.2.yng.030610 metagenome
Study Abstract
  
SRA Study Id SRP080523
Study Title Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB metagenome
Study Abstract
  
SRA Study Id SRP127899
Study Title Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.3.yng.090410 metagenome
Study Abstract
  
SRA Study Id SRP080522
Study Title Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA metagenome
Study Abstract
  
SRA Study Id SRP127896
Study Title Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.5.yng.040610 metagenome
Study Abstract
  
SRA Study Id SRP080521
Study Title Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS metagenome
Study Abstract
  
SRA Study Id SRP127897
Study Title Unplanted soil (control) microbial communities from North Carolina - M.Soil.5.yng.040610 metagenome
Study Abstract
  
SRA Study Id SRP080520
Study Title Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS metagenome
Study Abstract
  
SRA Study Id SRP121630
Study Title Arabidopsis rhizosphere microbial communities from the University of North Carolina, USA - metaT NBMF1_06_lowP_mix1_d1 metatranscriptome
Study Abstract
  
SRA Study Id SRP127858
Study Title Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.2.old.270510 metagenome
Study Abstract
  
SRA Study Id SRP127859
Study Title Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.9.old.080610 metagenome
Study Abstract
  
SRA Study Id SRP127856
Study Title Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.2.old.240510 metagenome
Study Abstract
  
SRA Study Id SRP127857
Study Title Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.1.yng.040610 metagenome
Study Abstract
  
SRA Study Id SRP127891
Study Title Unplanted soil (control) microbial communities from North Carolina - M.Soil.4.yng.170610 metagenome
Study Abstract
  
SRA Study Id SRP080519
Study Title Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL metagenome
Study Abstract
  
SRA Study Id SRP080518
Study Title Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA metagenome
Study Abstract
  
SRA Study Id SRP127894
Study Title Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.6.yng.070610 metagenome
Study Abstract
  
SRA Study Id SRP080515
Study Title Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mLB metagenome
Study Abstract
  
SRA Study Id SRP127851
Study Title Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.4.old.080610 metagenome
Study Abstract
  
SRA Study Id SRP127895
Study Title Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.2.yng.040610 metagenome
Study Abstract
  
SRA Study Id SRP080514
Study Title Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA metagenome
Study Abstract
  
SRA Study Id SRP080513
Study Title Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS metagenome
Study Abstract
  
SRA Study Id SRP127893
Study Title Unplanted soil (control) microbial communities from North Carolina - M.Soil.1.yng.030610 metagenome
Study Abstract
  
SRA Study Id SRP099462
Study Title Arabidopsis rhizosphere microbial communities from the University of North Carolina, USA - metaT NBMF1_05_lowP_nobac_d1 metatranscriptome
Study Abstract
  
SRA Study Id SRP099463
Study Title Arabidopsis rhizosphere microbial communities from the University of North Carolina, USA - metaT NBMF1_16_lowP_mix3_d2 metatranscriptome
Study Abstract
  
SRA Study Id SRP121667
Study Title Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB metagenome
Study Abstract
  
SRA Study Id SRP127887
Study Title Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.2.yng.030610 metagenome
Study Abstract
  
SRA Study Id SRP127888
Study Title Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.7.yng.070610 metagenome
Study Abstract
  
SRA Study Id SRP127886
Study Title Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.12.yng.090610 metagenome
Study Abstract
  
SRA Study Id SRP105677
Study Title Arabidopsis rhizosphere microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 metagenome
Study Abstract
  
SRA Study Id SRP105676
Study Title Arabidopsis rhizosphere microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 metagenome
Study Abstract
  
SRA Study Id SRP127848
Study Title Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.5.old.080610_R metagenome
Study Abstract
  
SRA Study Id SRP105599
Study Title Arabidopsis rhizosphere microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 metagenome
Study Abstract
  
SRA Study Id SRP105679
Study Title Arabidopsis rhizosphere microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 metagenome
Study Abstract
  
SRA Study Id SRP105678
Study Title Arabidopsis rhizosphere microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 metagenome
Study Abstract
  
SRA Study Id SRP105673
Study Title Arabidopsis rhizosphere microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 metagenome
Study Abstract
  
SRA Study Id SRP127880
Study Title Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.2.yng.030610 metagenome
Study Abstract
  
SRA Study Id SRP105672
Study Title Arabidopsis rhizosphere microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 metagenome
Study Abstract
  
SRA Study Id SRP105675
Study Title Arabidopsis rhizosphere microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 metagenome
Study Abstract
  
SRA Study Id SRP105598
Study Title Arabidopsis rhizosphere microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 metagenome
Study Abstract
  
SRA Study Id SRP105674
Study Title Arabidopsis rhizosphere microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 metagenome
Study Abstract
  
SRA Study Id SRP127883
Study Title Unplanted soil (control) microbial communities from North Carolina - M.Soil.2.old.190510 metagenome
Study Abstract
  
SRA Study Id SRP080527
Study Title Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF metagenome
Study Abstract
  
SRA Study Id SRP080525
Study Title Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA metagenome
Study Abstract
  
SRA Study Id SRP127881
Study Title Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.080610_6 metagenome
Study Abstract
  
SRA Study Id SRP127882
Study Title Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.7.yng.070610 metagenome
Study Abstract
  
SRA Study Id SRP105670
Study Title Arabidopsis rhizosphere microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 metagenome
Study Abstract
  
SRA Study Id SRP099650
Study Title Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS metagenome
Study Abstract
  
SRA Study Id SRP099455
Study Title Arabidopsis rhizosphere microbial communities from the University of North Carolina, USA - metaT NBMF1_13_lowP_nobac_d2 metatranscriptome
Study Abstract
  
SRA Study Id SRP099652
Study Title Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL metagenome
Study Abstract
  
SRA Study Id SRP099654
Study Title Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB metagenome
Study Abstract
  
Legacy ER Study ID 8073
Legacy GOLD ID Gm00406
Added By Ionna Pagani on 2012-02-10
Last Modified By Galina Ovchinnikova on 2016-12-01
PI Jeff Dangl
Description Plant associated metagenomes--Microbial community diversity and host control of community assembly across model and emerging plant ecological genomics systems
Relevance
Study Information Link
Study Information Visibility Public
Metagenomic Study Yes
Publication
Is GEBA No
Is HMP No
ECOSYSTEM CLASSIFICATION
Ecosystem Host-associated
Ecosystem Category Plants
Ecosystem Type Rhizoplane
Ecosystem Subtype Epiphytes
Specific Ecosystem Unclassified
STUDY COMPOSITION
Number of Biosamples 184
Number of Organisms 0
Number of Seq Projects 184
Number of Analysis Projects 368
Number of Related Studies 0

 

 

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