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Study

Study Name: Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States

Projects

Biosamples

Organisms

Biosamples: 108 Seq. Projects: 161
STUDY INFORMATION
GOLD Study ID Gs0142245
Study Name Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States
Other Names
NCBI Umbrella Bioproject Name
NCBI Umbrella Bioproject Accession
SRA Studies
SRA Study Id SRP298585  (Link to NCBI )
Study Title Mesorhizobium sp. OAE845 Genome sequencing
Study Abstract
  
SRA Study Id SRP298586  (Link to NCBI )
Study Title Mesorhizobium sp. OAP1076 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP298584  (Link to NCBI )
Study Title Oxalobacteraceae bacterium OAS666 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP298587  (Link to NCBI )
Study Title Pelomonas sp. OAE585 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP298588  (Link to NCBI )
Study Title Caulobacter sp. OAE837 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP298967  (Link to NCBI )
Study Title Chitinophaga sp. OAE873 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP291807  (Link to NCBI )
Study Title Bosea sp. OAE506 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP291806  (Link to NCBI )
Study Title Microbacterium sp. OAE522 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP291805  (Link to NCBI )
Study Title Nocardioides sp. OAE507 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP291804  (Link to NCBI )
Study Title Dyella sp. OAE510 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP292069  (Link to NCBI )
Study Title Rhodococcus sp. OAS809 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP292068  (Link to NCBI )
Study Title Sphingopyxis sp. OAS728 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP292046  (Link to NCBI )
Study Title Bosea sp. OAE752 Genome sequencing
Study Abstract
  
SRA Study Id SRP292045  (Link to NCBI )
Study Title Ramlibacter sp. OAE822 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP292089  (Link to NCBI )
Study Title Sphingomonas sp. OAS965 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP292044  (Link to NCBI )
Study Title Nordella sp. OAE833 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP292022  (Link to NCBI )
Study Title Sphingobium sp. OAE613 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP292021  (Link to NCBI )
Study Title Bacillus sp. OAE603 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP292043  (Link to NCBI )
Study Title Bradyrhizobium sp. OAE829 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP292042  (Link to NCBI )
Study Title Flavitalea sp. OAE831 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP292020  (Link to NCBI )
Study Title Aeromicrobium sp. OAE604 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP292041  (Link to NCBI )
Study Title Burkholderia sp. OAE615 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP292040  (Link to NCBI )
Study Title Paenibacillus sp. OAE614 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP292070  (Link to NCBI )
Study Title Mycobacterium sp. OAS707 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP292092  (Link to NCBI )
Study Title Bradyrhizobiaceae sp. OAS957 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP298993  (Link to NCBI )
Study Title Reyranella sp. OAS946 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP292091  (Link to NCBI )
Study Title Devosia sp. OAS928 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP292090  (Link to NCBI )
Study Title Chitinophagaceae bacterium OAS944 Genome sequencing
Study Abstract
  
SRA Study Id SRP298913  (Link to NCBI )
Study Title Rhizobium sp. OAE497 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP292019  (Link to NCBI )
Study Title Methylobacterium sp. OAE512b Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP292018  (Link to NCBI )
Study Title Bacillus sp. OAE578 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP292016  (Link to NCBI )
Study Title Nocardioides sp. OAE577 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP292057  (Link to NCBI )
Study Title Mycobacterium sp. OAE906 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP292056  (Link to NCBI )
Study Title Microbacterium sp. OAP127 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP292054  (Link to NCBI )
Study Title Starkeya sp. OAE902 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP292076  (Link to NCBI )
Study Title Leifsonia sp. OAS740 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP292075  (Link to NCBI )
Study Title Comamonadaceae bacterium OAS658 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP292053  (Link to NCBI )
Study Title Sphingomonas sp. OAE905 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP292052  (Link to NCBI )
Study Title Sphingomonas sp. OAE898 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP292074  (Link to NCBI )
Study Title Burkholderia sp. OAS925 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP292073  (Link to NCBI )
Study Title Mesorhizobium sp. OAS926 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP292051  (Link to NCBI )
Study Title Lysobacter sp. OAE881 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP292072  (Link to NCBI )
Study Title Asticcacaulis sp. OAS777 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP292050  (Link to NCBI )
Study Title Sphingomonas sp. OAE895 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP292071  (Link to NCBI )
Study Title Paenibacillus sp. OAS669 Genome sequencing and assembly
Study Abstract
  
Legacy ER Study ID
Legacy GOLD ID
Added By JGI automated process on 2019-05-14
Last Modified By JGI automated process on 2020-05-21
PI Trent Northen
Description The goal of this study is to characterize the physical, chemical, and genetic factors mediating interactions of organisms using controlled laboratory ecosystems combined with omics techniques; to better understand the dynamics of interactions in microbial and plant-microbe communities; and to assess the functional potential of plant-associated microbes and transcriptomics to characterize their interactions with plants.
Relevance
Study Information Visibility Public
Metagenomic Study Yes
Publication
Is GEBA
Is HMP
ECOSYSTEM CLASSIFICATION
Ecosystem Engineered
Ecosystem Category Lab enrichment
Ecosystem Type Defined media
Ecosystem Subtype Unclassified
Specific Ecosystem Unclassified
STUDY COMPOSITION
Number of Biosamples 108
Number of Organisms 54
Number of Seq Projects 161
Number of Analysis Projects 161
Number of Related Studies 0

 

 

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