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Study

Study Name: Understanding the reciprocal impacts of modified plant cell wall and associated microbiome

Projects

Biosamples

Organisms

Biosamples: 19 Seq. Projects: 237
STUDY INFORMATION
GOLD Study ID Gs0135161
Study Name Understanding the reciprocal impacts of modified plant cell wall and associated microbiome
Other Names
NCBI Umbrella Bioproject Name
NCBI Umbrella Bioproject ID
SRA Studies
SRA Study Id SRP191046  (Link to NCBI )
Study Title Sphingomonas sp. BK036 Genome sequencing
Study Abstract
  
SRA Study Id SRP191047  (Link to NCBI )
Study Title Streptomyces sp. BK022 Genome sequencing
Study Abstract
  
SRA Study Id SRP191045  (Link to NCBI )
Study Title Fictibacillus sp. BK138 Genome sequencing
Study Abstract
  
SRA Study Id SRP243250  (Link to NCBI )
Study Title Novosphingobium sp. BK455 Genome sequencing
Study Abstract
  
SRA Study Id SRP243252  (Link to NCBI )
Study Title Rhizobium sp. BK491 Genome sequencing
Study Abstract
  
SRA Study Id SRP191048  (Link to NCBI )
Study Title Rhizobium sp. BK398 Genome sequencing
Study Abstract
  
SRA Study Id SRP243251  (Link to NCBI )
Study Title Rhizobium sp. BK538 Genome sequencing
Study Abstract
  
SRA Study Id SRP191049  (Link to NCBI )
Study Title Rhizobium sp. BK418 Genome sequencing
Study Abstract
  
SRA Study Id SRP239783  (Link to NCBI )
Study Title Rhizobium sp. BK056 Genome sequencing
Study Abstract
  
SRA Study Id SRP243254  (Link to NCBI )
Study Title Mycolicibacterium sp. BK556 Genome sequencing
Study Abstract
  
SRA Study Id SRP243256  (Link to NCBI )
Study Title Rhizobium sp. BK529 Genome sequencing
Study Abstract
  
SRA Study Id SRP243498  (Link to NCBI )
Study Title Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdIQD-R2 metagenome
Study Abstract
  
SRA Study Id SRP243497  (Link to NCBI )
Study Title Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R3 metagenome
Study Abstract
  
SRA Study Id SRP185288  (Link to NCBI )
Study Title Streptomyces sp. BK161 Genome sequencing
Study Abstract
  
SRA Study Id SRP243257  (Link to NCBI )
Study Title Novosphingobium sp. BK540 Genome sequencing
Study Abstract
  
SRA Study Id SRP243259  (Link to NCBI )
Study Title Novosphingobium sp. BK592 Genome sequencing
Study Abstract
  
SRA Study Id SRP243261  (Link to NCBI )
Study Title Sphingomonas sp. BK580 Genome sequencing
Study Abstract
  
SRA Study Id SRP243260  (Link to NCBI )
Study Title Mycolicibacterium sp. BK557 Genome sequencing
Study Abstract
  
SRA Study Id SRP243263  (Link to NCBI )
Study Title Rhizobium sp. BK591 Genome sequencing
Study Abstract
  
SRA Study Id SRP191059  (Link to NCBI )
Study Title Streptomyces sp. BK387 Genome sequencing
Study Abstract
  
SRA Study Id SRP243265  (Link to NCBI )
Study Title Mycolicibacterium sp. BK634 Genome sequencing
Study Abstract
  
SRA Study Id SRP243264  (Link to NCBI )
Study Title Rhizobium sp. BK619 Genome sequencing
Study Abstract
  
SRA Study Id SRP243267  (Link to NCBI )
Study Title Novosphingobium sp. BK626 Genome sequencing
Study Abstract
  
SRA Study Id SRP243266  (Link to NCBI )
Study Title Variovorax sp. BK613 Genome sequencing
Study Abstract
  
SRA Study Id SRP243269  (Link to NCBI )
Study Title Rhizobium sp. BK399 Genome sequencing
Study Abstract
  
SRA Study Id SRP243268  (Link to NCBI )
Study Title Mycolicibacterium sp. BK598 Genome sequencing
Study Abstract
  
SRA Study Id SRP191101  (Link to NCBI )
Study Title Rhizobium sp. BK376 Genome sequencing
Study Abstract
  
SRA Study Id SRP191100  (Link to NCBI )
Study Title Bosea sp. BK604 Genome sequencing
Study Abstract
  
SRA Study Id SRP243272  (Link to NCBI )
Study Title Mycolicibacterium sp. BK607 Genome sequencing
Study Abstract
  
SRA Study Id SRP243271  (Link to NCBI )
Study Title Novosphingobium sp. BK657 Genome sequencing
Study Abstract
  
SRA Study Id SRP191106  (Link to NCBI )
Study Title Streptomyces sp. BK208 Genome sequencing
Study Abstract
  
SRA Study Id SRP243274  (Link to NCBI )
Study Title Rhizobium sp. BK612 Genome sequencing
Study Abstract
  
SRA Study Id SRP243273  (Link to NCBI )
Study Title Rhizobium sp. BK609 Genome sequencing
Study Abstract
  
SRA Study Id SRP191060  (Link to NCBI )
Study Title Rhizobium sp. BK251 Genome sequencing
Study Abstract
  
SRA Study Id SRP191061  (Link to NCBI )
Study Title Variovorax sp. BK119 Genome sequencing
Study Abstract
  
SRA Study Id SRP191062  (Link to NCBI )
Study Title Variovorax sp. BK370 Genome sequencing
Study Abstract
  
SRA Study Id SRP191063  (Link to NCBI )
Study Title Streptomyces sp. BK215 Genome sequencing
Study Abstract
  
SRA Study Id SRP243276  (Link to NCBI )
Study Title Novosphingobium sp. BK679 Genome sequencing
Study Abstract
  
SRA Study Id SRP243275  (Link to NCBI )
Study Title Rhizobium sp. BK602 Genome sequencing
Study Abstract
  
SRA Study Id SRP243278  (Link to NCBI )
Study Title Rhizobium sp. BK650 Genome sequencing
Study Abstract
  
SRA Study Id SRP243277  (Link to NCBI )
Study Title Variovorax sp. BK658 Genome sequencing
Study Abstract
  
SRA Study Id SRP191112  (Link to NCBI )
Study Title Streptomyces sp. BK674 Genome sequencing
Study Abstract
  
SRA Study Id SRP222484  (Link to NCBI )
Study Title Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R1 metagenome
Study Abstract
  
SRA Study Id SRP243281  (Link to NCBI )
Study Title Rhizobium sp. BK700 Genome sequencing
Study Abstract
  
SRA Study Id SRP191110  (Link to NCBI )
Study Title Variovorax sp. BK460 Genome sequencing
Study Abstract
  
SRA Study Id SRP243162  (Link to NCBI )
Study Title Rhizobium sp. BK007 Genome sequencing
Study Abstract
  
SRA Study Id SRP243283  (Link to NCBI )
Study Title Rhizobium sp. BK689 Genome sequencing
Study Abstract
  
SRA Study Id SRP243282  (Link to NCBI )
Study Title Rhizobium sp. BK680 Genome sequencing
Study Abstract
  
SRA Study Id SRP191114  (Link to NCBI )
Study Title Paenibacillus sp. BK736 Genome sequencing
Study Abstract
  
SRA Study Id SRP243284  (Link to NCBI )
Study Title Novosphingobium sp. BK727 Genome sequencing
Study Abstract
  
SRA Study Id SRP243207  (Link to NCBI )
Study Title Rhizobium sp. BK196 Genome sequencing
Study Abstract
  
SRA Study Id SRP243206  (Link to NCBI )
Study Title Rhizobium sp. BK252 Genome sequencing
Study Abstract
  
SRA Study Id SRP243209  (Link to NCBI )
Study Title Rhizobium sp. BK098 Genome sequencing
Study Abstract
  
SRA Study Id SRP243208  (Link to NCBI )
Study Title Rhizobium sp. BK112 Genome sequencing
Study Abstract
  
SRA Study Id SRP222523  (Link to NCBI )
Study Title Populus deltoides microbial communities from Bellville, Georgia, United States - Leaf-PdKOR-R3 metagenome
Study Abstract
  
SRA Study Id SRP243441  (Link to NCBI )
Study Title Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R3 metagenome
Study Abstract
  
SRA Study Id SRP191109  (Link to NCBI )
Study Title Streptomyces sp. BK438 Genome sequencing
Study Abstract
  
SRA Study Id SRP243201  (Link to NCBI )
Study Title Rhizobium sp. BK226 Genome sequencing
Study Abstract
  
SRA Study Id SRP243684  (Link to NCBI )
Study Title Paenibacillus sp. BK720 Genome sequencing
Study Abstract
  
SRA Study Id SRP243200  (Link to NCBI )
Study Title Rhizobium sp. BK077 Genome sequencing
Study Abstract
  
SRA Study Id SRP243203  (Link to NCBI )
Study Title Rhizobium sp. BK176 Genome sequencing
Study Abstract
  
SRA Study Id SRP243202  (Link to NCBI )
Study Title Rhizobium sp. BK181 Genome sequencing
Study Abstract
  
SRA Study Id SRP222485  (Link to NCBI )
Study Title Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R4 metagenome
Study Abstract
  
SRA Study Id SRP243205  (Link to NCBI )
Study Title Rhizobium sp. BK212 Genome sequencing
Study Abstract
  
SRA Study Id SRP222521  (Link to NCBI )
Study Title Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdIQD-R4 metagenome
Study Abstract
  
SRA Study Id SRP243204  (Link to NCBI )
Study Title Rhizobium sp. BK109 Genome sequencing
Study Abstract
  
SRA Study Id SRP222471  (Link to NCBI )
Study Title Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R2 metagenome
Study Abstract
  
SRA Study Id SRP191123  (Link to NCBI )
Study Title Rhizobium sp. BK696 Genome sequencing
Study Abstract
  
SRA Study Id SRP222470  (Link to NCBI )
Study Title Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R1 metagenome
Study Abstract
  
SRA Study Id SRP191124  (Link to NCBI )
Study Title Rhizobium sp. BK333 Genome sequencing
Study Abstract
  
SRA Study Id SRP191088  (Link to NCBI )
Study Title Paenibacillus sp. BK033 Genome sequencing
Study Abstract
  
SRA Study Id SRP191121  (Link to NCBI )
Study Title Streptomyces sp. BK239 Genome sequencing
Study Abstract
  
SRA Study Id SRP191122  (Link to NCBI )
Study Title Bacillus sp. BK100 Genome sequencing
Study Abstract
  
SRA Study Id SRP191128  (Link to NCBI )
Study Title Bradyrhizobium sp. BK707 Genome sequencing
Study Abstract
  
SRA Study Id SRP191083  (Link to NCBI )
Study Title Variovorax sp. BK151 Genome sequencing
Study Abstract
  
SRA Study Id SRP191087  (Link to NCBI )
Study Title Paenibacillus sp. BK673 Genome sequencing
Study Abstract
  
SRA Study Id SRP191120  (Link to NCBI )
Study Title Streptomyces sp. BK038 Genome sequencing
Study Abstract
  
SRA Study Id SRP191084  (Link to NCBI )
Study Title Sphingomonas sp. BK235 Genome sequencing
Study Abstract
  
SRA Study Id SRP191085  (Link to NCBI )
Study Title Rhizobium sp. BK068 Genome sequencing
Study Abstract
  
SRA Study Id SRP243218  (Link to NCBI )
Study Title Rhizobium sp. BK313 Genome sequencing
Study Abstract
  
SRA Study Id SRP243217  (Link to NCBI )
Study Title Rhizobium sp. BK312 Genome sequencing
Study Abstract
  
SRA Study Id SRP243219  (Link to NCBI )
Study Title Rhizobium sp. BK338 Genome sequencing
Study Abstract
  
SRA Study Id SRP222518  (Link to NCBI )
Study Title Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdIQD-R3 metagenome
Study Abstract
  
SRA Study Id SRP243210  (Link to NCBI )
Study Title Novosphingobium sp. BK256 Genome sequencing
Study Abstract
  
SRA Study Id SRP243212  (Link to NCBI )
Study Title Rhizobium sp. BK284 Genome sequencing
Study Abstract
  
SRA Study Id SRP243454  (Link to NCBI )
Study Title Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R4 metagenome
Study Abstract
  
SRA Study Id SRP243211  (Link to NCBI )
Study Title Rhizobium sp. BK275 Genome sequencing
Study Abstract
  
SRA Study Id SRP243214  (Link to NCBI )
Study Title Novosphingobium sp. BK258 Genome sequencing
Study Abstract
  
SRA Study Id SRP243213  (Link to NCBI )
Study Title Novosphingobium sp. BK280 Genome sequencing
Study Abstract
  
SRA Study Id SRP243216  (Link to NCBI )
Study Title Novosphingobium sp. BK267 Genome sequencing
Study Abstract
  
SRA Study Id SRP243215  (Link to NCBI )
Study Title Rhizobium sp. BK289 Genome sequencing
Study Abstract
  
SRA Study Id SRP243457  (Link to NCBI )
Study Title Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdIQD-R1 metagenome
Study Abstract
  
SRA Study Id SRP191134  (Link to NCBI )
Study Title Streptomyces sp. BK329 Genome sequencing
Study Abstract
  
SRA Study Id SRP191135  (Link to NCBI )
Study Title Streptomyces sp. BK205 Genome sequencing
Study Abstract
  
SRA Study Id SRP191099  (Link to NCBI )
Study Title Streptomyces sp. BK042 Genome sequencing
Study Abstract
  
SRA Study Id SRP191132  (Link to NCBI )
Study Title Methylobacterium sp. BK227 Genome sequencing
Study Abstract
  
SRA Study Id SRP191136  (Link to NCBI )
Study Title Bacillus sp. BK450 Genome sequencing
Study Abstract
  
SRA Study Id SRP191097  (Link to NCBI )
Study Title Rhizobium sp. BK315 Genome sequencing
Study Abstract
  
SRA Study Id SRP191130  (Link to NCBI )
Study Title Lysinibacillus sp. BK089 Genome sequencing
Study Abstract
  
SRA Study Id SRP191098  (Link to NCBI )
Study Title Duganella sp. BK054 Genome sequencing
Study Abstract
  
SRA Study Id SRP243229  (Link to NCBI )
Study Title Rhizobium sp. BK386 Genome sequencing
Study Abstract
  
SRA Study Id SRP243228  (Link to NCBI )
Study Title Rhizobium sp. BK377 Genome sequencing
Study Abstract
  
SRA Study Id SRP258552  (Link to NCBI )
Study Title Populus deltoides microbial communities from Bellville, Georgia, United States - Leaf-Control-R2 metagenome
Study Abstract
  
SRA Study Id SRP222500  (Link to NCBI )
Study Title Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R2 metagenome
Study Abstract
  
SRA Study Id SRP243220  (Link to NCBI )
Study Title Novosphingobium sp. BK369 Genome sequencing
Study Abstract
  
SRA Study Id SRP243223  (Link to NCBI )
Study Title Rhizobium sp. BK316 Genome sequencing
Study Abstract
  
SRA Study Id SRP191129  (Link to NCBI )
Study Title Streptomyces sp. BK447 Genome sequencing
Study Abstract
  
SRA Study Id SRP243222  (Link to NCBI )
Study Title Rhizobium sp. BK327 Genome sequencing
Study Abstract
  
SRA Study Id SRP243225  (Link to NCBI )
Study Title Sphingomonas sp. BK345 Genome sequencing
Study Abstract
  
SRA Study Id SRP281865  (Link to NCBI )
Study Title Populus deltoides microbial communities from Bellville, Georgia, United States - Leaf-Control-R3 metagenome
Study Abstract
  
SRA Study Id SRP243224  (Link to NCBI )
Study Title Novosphingobium sp. BK336 Genome sequencing
Study Abstract
  
SRA Study Id SRP243227  (Link to NCBI )
Study Title Rhizobium sp. BK379 Genome sequencing
Study Abstract
  
SRA Study Id SRP243226  (Link to NCBI )
Study Title Rhizobium sp. BK332 Genome sequencing
Study Abstract
  
SRA Study Id SRP243191  (Link to NCBI )
Study Title Rhizobium sp. BK008 Genome sequencing
Study Abstract
  
SRA Study Id SRP191146  (Link to NCBI )
Study Title Duganella sp. BK701 Genome sequencing
Study Abstract
  
SRA Study Id SRP243193  (Link to NCBI )
Study Title Mitsuaria sp. BK037 Genome sequencing
Study Abstract
  
SRA Study Id SRP191143  (Link to NCBI )
Study Title Bacillus sp. BK006 Genome sequencing
Study Abstract
  
SRA Study Id SRP243192  (Link to NCBI )
Study Title Mitsuaria sp. BK045 Genome sequencing
Study Abstract
  
SRA Study Id SRP191023  (Link to NCBI )
Study Title Pantoea sp. BK028 Genome sequencing
Study Abstract
  
SRA Study Id SRP191144  (Link to NCBI )
Study Title Mycobacterium sp. BK086 Genome sequencing
Study Abstract
  
SRA Study Id SRP243195  (Link to NCBI )
Study Title Rhizobium sp. BK060 Genome sequencing
Study Abstract
  
SRA Study Id SRP191149  (Link to NCBI )
Study Title Bacillus sp. BK245 Genome sequencing
Study Abstract
  
SRA Study Id SRP243194  (Link to NCBI )
Study Title Rhizobium sp. BK049 Genome sequencing
Study Abstract
  
SRA Study Id SRP243230  (Link to NCBI )
Study Title Rhizobium sp. BK381 Genome sequencing
Study Abstract
  
SRA Study Id SRP243197  (Link to NCBI )
Study Title Sphingomonas sp. BK069 Genome sequencing
Study Abstract
  
SRA Study Id SRP243472  (Link to NCBI )
Study Title Populus deltoides microbial communities from Bellville, Georgia, United States - Leaf-PdIQD-R1 metagenome
Study Abstract
  
SRA Study Id SRP191026  (Link to NCBI )
Study Title Leifsonia sp. BK543 Genome sequencing
Study Abstract
  
SRA Study Id SRP243196  (Link to NCBI )
Study Title Mitsuaria sp. BK041 Genome sequencing
Study Abstract
  
SRA Study Id SRP243471  (Link to NCBI )
Study Title Populus deltoides microbial communities from Bellville, Georgia, United States - Leaf-Control-R4 metagenome
Study Abstract
  
SRA Study Id SRP191027  (Link to NCBI )
Study Title Larkinella sp. BK230 Genome sequencing
Study Abstract
  
SRA Study Id SRP191148  (Link to NCBI )
Study Title Streptomyces sp. BK561 Genome sequencing
Study Abstract
  
SRA Study Id SRP243239  (Link to NCBI )
Study Title Novosphingobium sp. BK401 Genome sequencing
Study Abstract
  
SRA Study Id SRP243232  (Link to NCBI )
Study Title Novosphingobium sp. BK349 Genome sequencing
Study Abstract
  
SRA Study Id SRP243474  (Link to NCBI )
Study Title Populus deltoides microbial communities from Bellville, Georgia, United States - Leaf-PdIQD-R4 metagenome
Study Abstract
  
SRA Study Id SRP243231  (Link to NCBI )
Study Title Novosphingobium sp. BK352 Genome sequencing
Study Abstract
  
SRA Study Id SRP243233  (Link to NCBI )
Study Title Rhizobium sp. BK347 Genome sequencing
Study Abstract
  
SRA Study Id SRP243236  (Link to NCBI )
Study Title Novosphingobium sp. BK361 Genome sequencing
Study Abstract
  
SRA Study Id SRP243478  (Link to NCBI )
Study Title Populus deltoides microbial communities from Bellville, Georgia, United States - Leaf-PdIQD-R2 metagenome
Study Abstract
  
SRA Study Id SRP243235  (Link to NCBI )
Study Title Rhizobium sp. BK661 Genome sequencing
Study Abstract
  
SRA Study Id SRP243238  (Link to NCBI )
Study Title Novosphingobium sp. BK430 Genome sequencing
Study Abstract
  
SRA Study Id SRP243237  (Link to NCBI )
Study Title Rhizobium sp. BK393 Genome sequencing
Study Abstract
  
SRA Study Id SRP191035  (Link to NCBI )
Study Title Caulobacter sp. BK020 Genome sequencing
Study Abstract
  
SRA Study Id SRP191036  (Link to NCBI )
Study Title Microbacterium sp. BK664 Genome sequencing
Study Abstract
  
SRA Study Id SRP191154  (Link to NCBI )
Study Title Mycobacterium sp. BK558 Genome sequencing
Study Abstract
  
SRA Study Id SRP191033  (Link to NCBI )
Study Title Stenotrophomonas sp. BK441 Genome sequencing
Study Abstract
  
SRA Study Id SRP191155  (Link to NCBI )
Study Title Streptomyces sp. BK141 Genome sequencing
Study Abstract
  
SRA Study Id SRP191034  (Link to NCBI )
Study Title Bosea sp. BK498 Genome sequencing
Study Abstract
  
SRA Study Id SRP195752  (Link to NCBI )
Study Title Streptomyces sp. BK340 Genome sequencing
Study Abstract
  
SRA Study Id SRP243241  (Link to NCBI )
Study Title Novosphingobium sp. BK431 Genome sequencing
Study Abstract
  
SRA Study Id SRP243240  (Link to NCBI )
Study Title Novosphingobium sp. BK409 Genome sequencing
Study Abstract
  
SRA Study Id SRP191152  (Link to NCBI )
Study Title Streptomyces sp. BK335 Genome sequencing
Study Abstract
  
SRA Study Id SRP191032  (Link to NCBI )
Study Title Microbacterium sp. BK668 Genome sequencing
Study Abstract
  
SRA Study Id SRP191153  (Link to NCBI )
Study Title Streptomyces sp. BK308 Genome sequencing
Study Abstract
  
SRA Study Id SRP191151  (Link to NCBI )
Study Title Tumebacillus sp. BK434 Genome sequencing
Study Abstract
  
SRA Study Id SRP243243  (Link to NCBI )
Study Title Rhizobium sp. BK512 Genome sequencing
Study Abstract
  
SRA Study Id SRP243245  (Link to NCBI )
Study Title Rhizobium sp. BK527 Genome sequencing
Study Abstract
  
SRA Study Id SRP243244  (Link to NCBI )
Study Title Sphingomonas sp. BK481 Genome sequencing
Study Abstract
  
SRA Study Id SRP243247  (Link to NCBI )
Study Title Novosphingobium sp. BK448 Genome sequencing
Study Abstract
  
SRA Study Id SRP243246  (Link to NCBI )
Study Title Rhizobium sp. BK456 Genome sequencing
Study Abstract
  
SRA Study Id SRP243249  (Link to NCBI )
Study Title Novosphingobium sp. BK486 Genome sequencing
Study Abstract
  
SRA Study Id SRP243248  (Link to NCBI )
Study Title Rhizobium sp. BK463 Genome sequencing
Study Abstract
  
Legacy ER Study ID
Legacy GOLD ID
Added By JGI automated process on 2018-06-26
Last Modified By JGI automated process on 2019-09-06
PI Udaya C. Kalluri
Description Genome and transcriptome sequencing to test the hypothesis that genetic modification of host cell wall has cascading and quantifiable phenotypic impacts on its secondary metabolome and the associated functional microbiome.
Relevance
Study Information Link
Study Information Visibility Public
Metagenomic Study Yes
Publication
Is GEBA
Is HMP
ECOSYSTEM CLASSIFICATION
Ecosystem Host-associated
Ecosystem Category Plants
Ecosystem Type Phyllosphere
Ecosystem Subtype Unclassified
Specific Ecosystem Unclassified
STUDY COMPOSITION
Number of Biosamples 19
Number of Organisms 183
Number of Seq Projects 237
Number of Analysis Projects 201
Number of Related Studies 0

 

 

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