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Study

Study Name: Light-induced gene expression in cosmopolitan freshwater Actinobacteria

Projects

Biosamples

Organisms

Biosamples: 0 Seq. Projects: 56
STUDY INFORMATION
GOLD Study ID Gs0134265
Study Name Light-induced gene expression in cosmopolitan freshwater Actinobacteria
Other Names
NCBI Umbrella Bioproject Name
NCBI Umbrella Bioproject ID
SRA Studies
SRA Study Id SRP172207  (Link to NCBI )
Study Title Aurantimicrobium sp. Mo1 transcriptome - MW0 - Mo1_0_dark
Study Abstract
  
SRA Study Id SRP172208  (Link to NCBI )
Study Title Aurantimicrobium sp. Mo1 transcriptome - MX5 - Mo1_1h_dark
Study Abstract
  
SRA Study Id SRP172205  (Link to NCBI )
Study Title Aurantimicrobium sp. Mo1 transcriptome - MY0 - Mo1_0_dark
Study Abstract
  
SRA Study Id SRP172206  (Link to NCBI )
Study Title Aurantimicrobium sp. Mo1 transcriptome - MX6 - Mo1_6h_dark
Study Abstract
  
SRA Study Id SRP172203  (Link to NCBI )
Study Title Aurantimicrobium sp. Mo1 transcriptome - MZ0 - Mo1_0_dark
Study Abstract
  
SRA Study Id SRP172204  (Link to NCBI )
Study Title Aurantimicrobium sp. Mo1 transcriptome - MX4 - Mo1_15m_dark
Study Abstract
  
SRA Study Id SRP172201  (Link to NCBI )
Study Title Aurantimicrobium sp. Mo1 transcriptome - MY3 - Mo1_6h_light
Study Abstract
  
SRA Study Id SRP172202  (Link to NCBI )
Study Title Aurantimicrobium sp. Mo1 transcriptome - MY4 - Mo1_15m_dark
Study Abstract
  
SRA Study Id SRP172200  (Link to NCBI )
Study Title Aurantimicrobium sp. Mo1 transcriptome - MY1 - Mo1_15m_light
Study Abstract
  
SRA Study Id SRP172199  (Link to NCBI )
Study Title Aurantimicrobium sp. Mo1 transcriptome - MY2 - Mo1_1h_light
Study Abstract
  
SRA Study Id SRP154170  (Link to NCBI )
Study Title Rhodoluna lacicola MWH-Ta8 transcriptome - TC2 - Ta8_1h_light
Study Abstract
  
SRA Study Id SRP172197  (Link to NCBI )
Study Title Aurantimicrobium sp. Mo1 transcriptome - MX3 - Mo1_6h_light
Study Abstract
  
SRA Study Id SRP172198  (Link to NCBI )
Study Title Aurantimicrobium sp. Mo1 transcriptome - MZ1 - Mo1_15m_light
Study Abstract
  
SRA Study Id SRP154174  (Link to NCBI )
Study Title Rhodoluna lacicola MWH-Ta8 transcriptome - TE1 - Ta8_15m_light
Study Abstract
  
SRA Study Id SRP172195  (Link to NCBI )
Study Title Aurantimicrobium sp. Mo1 transcriptome - MY6 - Mo1_6h_dark
Study Abstract
  
SRA Study Id SRP172196  (Link to NCBI )
Study Title Aurantimicrobium sp. Mo1 transcriptome - MY5 - Mo1_1h_dark
Study Abstract
  
SRA Study Id SRP154173  (Link to NCBI )
Study Title Rhodoluna lacicola MWH-Ta8 transcriptome - TB2 - Ta8_1h_light
Study Abstract
  
SRA Study Id SRP154172  (Link to NCBI )
Study Title Rhodoluna lacicola MWH-Ta8 transcriptome - TA1 - Ta8_15m_light
Study Abstract
  
SRA Study Id SRP172193  (Link to NCBI )
Study Title Aurantimicrobium sp. Mo1 transcriptome - MZ4 - Mo1_15m_dark
Study Abstract
  
SRA Study Id SRP154171  (Link to NCBI )
Study Title Rhodoluna lacicola MWH-Ta8 transcriptome - TA0 - Ta8_0_dark
Study Abstract
  
SRA Study Id SRP172194  (Link to NCBI )
Study Title Aurantimicrobium sp. Mo1 transcriptome - MZ2 - Mo1_1h_light
Study Abstract
  
SRA Study Id SRP154178  (Link to NCBI )
Study Title Rhodoluna lacicola MWH-Ta8 transcriptome - TC6 - Ta8_6h_dark
Study Abstract
  
SRA Study Id SRP154177  (Link to NCBI )
Study Title Rhodoluna lacicola MWH-Ta8 transcriptome - TC5 - Ta8_1h_dark
Study Abstract
  
SRA Study Id SRP154176  (Link to NCBI )
Study Title Rhodoluna lacicola MWH-Ta8 transcriptome - TE2 - Ta8_1h_light
Study Abstract
  
SRA Study Id SRP154175  (Link to NCBI )
Study Title Rhodoluna lacicola MWH-Ta8 transcriptome - TE0 - Ta8_0_dark
Study Abstract
  
SRA Study Id SRP154163  (Link to NCBI )
Study Title Rhodoluna lacicola MWH-Ta8 transcriptome - TE4 - Ta8_15m_dark
Study Abstract
  
SRA Study Id SRP154162  (Link to NCBI )
Study Title Rhodoluna lacicola MWH-Ta8 transcriptome - TB3 - Ta8_6h_light
Study Abstract
  
SRA Study Id SRP154161  (Link to NCBI )
Study Title Rhodoluna lacicola MWH-Ta8 transcriptome - TB6 - Ta8_6h_dark
Study Abstract
  
SRA Study Id SRP154160  (Link to NCBI )
Study Title Rhodoluna lacicola MWH-Ta8 transcriptome - TE6 - Ta8_6h_dark
Study Abstract
  
SRA Study Id SRP154167  (Link to NCBI )
Study Title Rhodoluna lacicola MWH-Ta8 transcriptome - TB5 - Ta8_1h_dark
Study Abstract
  
SRA Study Id SRP154166  (Link to NCBI )
Study Title Rhodoluna lacicola MWH-Ta8 transcriptome - TB1 - Ta8_15m_light
Study Abstract
  
SRA Study Id SRP154165  (Link to NCBI )
Study Title Rhodoluna lacicola MWH-Ta8 transcriptome - TB0 - Ta8_0_dark
Study Abstract
  
SRA Study Id SRP154164  (Link to NCBI )
Study Title Rhodoluna lacicola MWH-Ta8 transcriptome - TB4 - Ta8_15m_dark
Study Abstract
  
SRA Study Id SRP154169  (Link to NCBI )
Study Title Rhodoluna lacicola MWH-Ta8 transcriptome - TC1 - Ta8_15m_light
Study Abstract
  
SRA Study Id SRP154168  (Link to NCBI )
Study Title Rhodoluna lacicola MWH-Ta8 transcriptome - TC0 - Ta8_0_dark
Study Abstract
  
SRA Study Id SRP172216  (Link to NCBI )
Study Title Aurantimicrobium sp. Mo1 transcriptome - MZ6 - Mo1_6h_dark
Study Abstract
  
SRA Study Id SRP172214  (Link to NCBI )
Study Title Aurantimicrobium sp. Mo1 transcriptome - MW4 - Mo1_15m_dark
Study Abstract
  
SRA Study Id SRP172215  (Link to NCBI )
Study Title Aurantimicrobium sp. Mo1 transcriptome - MZ3 - Mo1_6h_light
Study Abstract
  
SRA Study Id SRP172212  (Link to NCBI )
Study Title Aurantimicrobium sp. Mo1 transcriptome - MW1 - Mo1_15m_light
Study Abstract
  
SRA Study Id SRP172213  (Link to NCBI )
Study Title Aurantimicrobium sp. Mo1 transcriptome - MW5 - Mo1_1h_dark
Study Abstract
  
SRA Study Id SRP172210  (Link to NCBI )
Study Title Aurantimicrobium sp. Mo1 transcriptome - MW2 - Mo1_1h_light
Study Abstract
  
SRA Study Id SRP172211  (Link to NCBI )
Study Title Aurantimicrobium sp. Mo1 transcriptome - MW6 - Mo1_6h_dark
Study Abstract
  
SRA Study Id SRP154152  (Link to NCBI )
Study Title Rhodoluna lacicola MWH-Ta8 transcriptome - TE3 - Ta8_6h_light
Study Abstract
  
SRA Study Id SRP154151  (Link to NCBI )
Study Title Rhodoluna lacicola MWH-Ta8 transcriptome - TE5 - Ta8_1h_dark
Study Abstract
  
SRA Study Id SRP154156  (Link to NCBI )
Study Title Rhodoluna lacicola MWH-Ta8 transcriptome - TA3 - Ta8_6h_light
Study Abstract
  
SRA Study Id SRP154155  (Link to NCBI )
Study Title Rhodoluna lacicola MWH-Ta8 transcriptome - TA2 - Ta8_1h_light
Study Abstract
  
SRA Study Id SRP154154  (Link to NCBI )
Study Title Rhodoluna lacicola MWH-Ta8 transcriptome - TC4 - Ta8_15m_dark
Study Abstract
  
SRA Study Id SRP154153  (Link to NCBI )
Study Title Rhodoluna lacicola MWH-Ta8 transcriptome - TC3 - Ta8_6h_light
Study Abstract
  
SRA Study Id SRP154159  (Link to NCBI )
Study Title Rhodoluna lacicola MWH-Ta8 transcriptome - TA6 - Ta8_6h_dark
Study Abstract
  
SRA Study Id SRP154158  (Link to NCBI )
Study Title Rhodoluna lacicola MWH-Ta8 transcriptome - TA4 - Ta8_15m_dark
Study Abstract
  
SRA Study Id SRP154157  (Link to NCBI )
Study Title Rhodoluna lacicola MWH-Ta8 transcriptome - TA5 - Ta8_1h_dark
Study Abstract
  
SRA Study Id SRP172209  (Link to NCBI )
Study Title Aurantimicrobium sp. Mo1 transcriptome - MW3 - Mo1_6h_light
Study Abstract
  
Legacy ER Study ID
Legacy GOLD ID
Added By JGI automated process on 2018-03-24
Last Modified By JGI automated process on 2019-09-06
PI Julia Maresca
Description Transcriptome sequencing of heterotrophic Actinobacteria Rhodoluna (R.) lacicola Ta8 and Aurantimicrobium sp. Mo1, which both grow faster in the light than in the dark, even though neither has an identifiable light-harvesting system. The goal of this study is to identify the genes and pathways responsible for this phenotype, and to determine how Actinobacteria respond to changing light regimes
Relevance
Study Information Link
Study Information Visibility Public
Metagenomic Study No
Publication
Is GEBA
Is HMP
ECOSYSTEM CLASSIFICATION
Ecosystem
Ecosystem Category
Ecosystem Type
Ecosystem Subtype
Specific Ecosystem
STUDY COMPOSITION
Number of Biosamples 0
Number of Organisms 2
Number of Seq Projects 56
Number of Analysis Projects 0
Number of Related Studies 0

 

 

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