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Study

Study Name: Light-induced gene expression in cosmopolitan freshwater Actinobacteria

Projects

Biosamples

Organisms

Biosamples: 0 Seq. Projects: 56
STUDY INFORMATION
GOLD Study ID Gs0134265
Study Name Light-induced gene expression in cosmopolitan freshwater Actinobacteria
Other Names
NCBI Umbrella Bioproject Name
NCBI Umbrella Bioproject ID
SRA Studies
SRA Study Id SRP172207
Study Title Aurantimicrobium sp. Mo1 transcriptome - MW0 - Mo1_0_dark
Study Abstract
  
SRA Study Id SRP172208
Study Title Aurantimicrobium sp. Mo1 transcriptome - MX5 - Mo1_1h_dark
Study Abstract
  
SRA Study Id SRP172205
Study Title Aurantimicrobium sp. Mo1 transcriptome - MY0 - Mo1_0_dark
Study Abstract
  
SRA Study Id SRP172206
Study Title Aurantimicrobium sp. Mo1 transcriptome - MX6 - Mo1_6h_dark
Study Abstract
  
SRA Study Id SRP172203
Study Title Aurantimicrobium sp. Mo1 transcriptome - MZ0 - Mo1_0_dark
Study Abstract
  
SRA Study Id SRP172204
Study Title Aurantimicrobium sp. Mo1 transcriptome - MX4 - Mo1_15m_dark
Study Abstract
  
SRA Study Id SRP172201
Study Title Aurantimicrobium sp. Mo1 transcriptome - MY3 - Mo1_6h_light
Study Abstract
  
SRA Study Id SRP172202
Study Title Aurantimicrobium sp. Mo1 transcriptome - MY4 - Mo1_15m_dark
Study Abstract
  
SRA Study Id SRP172200
Study Title Aurantimicrobium sp. Mo1 transcriptome - MY1 - Mo1_15m_light
Study Abstract
  
SRA Study Id SRP172199
Study Title Aurantimicrobium sp. Mo1 transcriptome - MY2 - Mo1_1h_light
Study Abstract
  
SRA Study Id SRP154170
Study Title Rhodoluna lacicola MWH-Ta8 transcriptome - TC2 - Ta8_1h_light
Study Abstract
  
SRA Study Id SRP172197
Study Title Aurantimicrobium sp. Mo1 transcriptome - MX3 - Mo1_6h_light
Study Abstract
  
SRA Study Id SRP172198
Study Title Aurantimicrobium sp. Mo1 transcriptome - MZ1 - Mo1_15m_light
Study Abstract
  
SRA Study Id SRP154174
Study Title Rhodoluna lacicola MWH-Ta8 transcriptome - TE1 - Ta8_15m_light
Study Abstract
  
SRA Study Id SRP172195
Study Title Aurantimicrobium sp. Mo1 transcriptome - MY6 - Mo1_6h_dark
Study Abstract
  
SRA Study Id SRP172196
Study Title Aurantimicrobium sp. Mo1 transcriptome - MY5 - Mo1_1h_dark
Study Abstract
  
SRA Study Id SRP154173
Study Title Rhodoluna lacicola MWH-Ta8 transcriptome - TB2 - Ta8_1h_light
Study Abstract
  
SRA Study Id SRP154172
Study Title Rhodoluna lacicola MWH-Ta8 transcriptome - TA1 - Ta8_15m_light
Study Abstract
  
SRA Study Id SRP172193
Study Title Aurantimicrobium sp. Mo1 transcriptome - MZ4 - Mo1_15m_dark
Study Abstract
  
SRA Study Id SRP154171
Study Title Rhodoluna lacicola MWH-Ta8 transcriptome - TA0 - Ta8_0_dark
Study Abstract
  
SRA Study Id SRP172194
Study Title Aurantimicrobium sp. Mo1 transcriptome - MZ2 - Mo1_1h_light
Study Abstract
  
SRA Study Id SRP154178
Study Title Rhodoluna lacicola MWH-Ta8 transcriptome - TC6 - Ta8_6h_dark
Study Abstract
  
SRA Study Id SRP154177
Study Title Rhodoluna lacicola MWH-Ta8 transcriptome - TC5 - Ta8_1h_dark
Study Abstract
  
SRA Study Id SRP154176
Study Title Rhodoluna lacicola MWH-Ta8 transcriptome - TE2 - Ta8_1h_light
Study Abstract
  
SRA Study Id SRP154175
Study Title Rhodoluna lacicola MWH-Ta8 transcriptome - TE0 - Ta8_0_dark
Study Abstract
  
SRA Study Id SRP154163
Study Title Rhodoluna lacicola MWH-Ta8 transcriptome - TE4 - Ta8_15m_dark
Study Abstract
  
SRA Study Id SRP154162
Study Title Rhodoluna lacicola MWH-Ta8 transcriptome - TB3 - Ta8_6h_light
Study Abstract
  
SRA Study Id SRP154161
Study Title Rhodoluna lacicola MWH-Ta8 transcriptome - TB6 - Ta8_6h_dark
Study Abstract
  
SRA Study Id SRP154160
Study Title Rhodoluna lacicola MWH-Ta8 transcriptome - TE6 - Ta8_6h_dark
Study Abstract
  
SRA Study Id SRP154167
Study Title Rhodoluna lacicola MWH-Ta8 transcriptome - TB5 - Ta8_1h_dark
Study Abstract
  
SRA Study Id SRP154166
Study Title Rhodoluna lacicola MWH-Ta8 transcriptome - TB1 - Ta8_15m_light
Study Abstract
  
SRA Study Id SRP154165
Study Title Rhodoluna lacicola MWH-Ta8 transcriptome - TB0 - Ta8_0_dark
Study Abstract
  
SRA Study Id SRP154164
Study Title Rhodoluna lacicola MWH-Ta8 transcriptome - TB4 - Ta8_15m_dark
Study Abstract
  
SRA Study Id SRP154169
Study Title Rhodoluna lacicola MWH-Ta8 transcriptome - TC1 - Ta8_15m_light
Study Abstract
  
SRA Study Id SRP154168
Study Title Rhodoluna lacicola MWH-Ta8 transcriptome - TC0 - Ta8_0_dark
Study Abstract
  
SRA Study Id SRP172216
Study Title Aurantimicrobium sp. Mo1 transcriptome - MZ6 - Mo1_6h_dark
Study Abstract
  
SRA Study Id SRP172214
Study Title Aurantimicrobium sp. Mo1 transcriptome - MW4 - Mo1_15m_dark
Study Abstract
  
SRA Study Id SRP172215
Study Title Aurantimicrobium sp. Mo1 transcriptome - MZ3 - Mo1_6h_light
Study Abstract
  
SRA Study Id SRP172212
Study Title Aurantimicrobium sp. Mo1 transcriptome - MW1 - Mo1_15m_light
Study Abstract
  
SRA Study Id SRP172213
Study Title Aurantimicrobium sp. Mo1 transcriptome - MW5 - Mo1_1h_dark
Study Abstract
  
SRA Study Id SRP172210
Study Title Aurantimicrobium sp. Mo1 transcriptome - MW2 - Mo1_1h_light
Study Abstract
  
SRA Study Id SRP172211
Study Title Aurantimicrobium sp. Mo1 transcriptome - MW6 - Mo1_6h_dark
Study Abstract
  
SRA Study Id SRP154152
Study Title Rhodoluna lacicola MWH-Ta8 transcriptome - TE3 - Ta8_6h_light
Study Abstract
  
SRA Study Id SRP154151
Study Title Rhodoluna lacicola MWH-Ta8 transcriptome - TE5 - Ta8_1h_dark
Study Abstract
  
SRA Study Id SRP154156
Study Title Rhodoluna lacicola MWH-Ta8 transcriptome - TA3 - Ta8_6h_light
Study Abstract
  
SRA Study Id SRP154155
Study Title Rhodoluna lacicola MWH-Ta8 transcriptome - TA2 - Ta8_1h_light
Study Abstract
  
SRA Study Id SRP154154
Study Title Rhodoluna lacicola MWH-Ta8 transcriptome - TC4 - Ta8_15m_dark
Study Abstract
  
SRA Study Id SRP154153
Study Title Rhodoluna lacicola MWH-Ta8 transcriptome - TC3 - Ta8_6h_light
Study Abstract
  
SRA Study Id SRP154159
Study Title Rhodoluna lacicola MWH-Ta8 transcriptome - TA6 - Ta8_6h_dark
Study Abstract
  
SRA Study Id SRP154158
Study Title Rhodoluna lacicola MWH-Ta8 transcriptome - TA4 - Ta8_15m_dark
Study Abstract
  
SRA Study Id SRP154157
Study Title Rhodoluna lacicola MWH-Ta8 transcriptome - TA5 - Ta8_1h_dark
Study Abstract
  
SRA Study Id SRP172209
Study Title Aurantimicrobium sp. Mo1 transcriptome - MW3 - Mo1_6h_light
Study Abstract
  
Legacy ER Study ID
Legacy GOLD ID
Added By JGI automated process on 2018-03-24
Last Modified By
PI Julia Maresca
Description Transcriptome sequencing of heterotrophic Actinobacteria Rhodoluna (R.) lacicola Ta8 and Aurantimicrobium sp. Mo1, which both grow faster in the light than in the dark, even though neither has an identifiable light-harvesting system. The goal of this study is to identify the genes and pathways responsible for this phenotype, and to determine how Actinobacteria respond to changing light regimes
Relevance
Study Information Link
Study Information Visibility Public
Metagenomic Study No
Publication
Is GEBA
Is HMP
ECOSYSTEM CLASSIFICATION
Ecosystem
Ecosystem Category
Ecosystem Type
Ecosystem Subtype
Specific Ecosystem
STUDY COMPOSITION
Number of Biosamples 0
Number of Organisms 2
Number of Seq Projects 56
Number of Analysis Projects 0
Number of Related Studies 0

 

 

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