The following elements will have their visibility changed, please review the list before confirming the visibility change

Study

Study Name: Synthetic bacterial communities of pure cultures isolated from sediment of Lake Washington, USA

Projects

Biosamples

Organisms

Biosamples: 12 Seq. Projects: 84
STUDY INFORMATION
GOLD Study ID Gs0127379
Study Name Synthetic bacterial communities of pure cultures isolated from sediment of Lake Washington, USA
Other Names
NCBI Umbrella Bioproject Name
NCBI Umbrella Bioproject ID
SRA Studies
SRA Study Id SRP112869
Study Title Synthetic bacterial communities of pure cultures from sediment of Lake Washington, USA, under low oxygen conditions - MT methane_oxidizing 4strains_1hour-b metatranscriptome
Study Abstract
  
SRA Study Id SRP134778
Study Title Flavobacterium sp. 9 strain:9 Genome sequencing
Study Abstract
  
SRA Study Id SRP134777
Study Title Comamonas sp. 26 strain:26 Genome sequencing
Study Abstract
  
SRA Study Id SRP134775
Study Title Flavobacterium sp. 2 strain:2 Genome sequencing
Study Abstract
  
SRA Study Id SRP112868
Study Title Synthetic bacterial communities of pure cultures from sediment of Lake Washington, USA, under low oxygen conditions - MT methane_oxidizing 4strains_48hour-b metatranscriptome
Study Abstract
  
SRA Study Id SRP139227
Study Title Acidovorax sp. 93 strain:93 Genome sequencing
Study Abstract
  
SRA Study Id SRP139229
Study Title Flavobacterium sp. 90 strain:90 Genome sequencing
Study Abstract
  
SRA Study Id SRP139228
Study Title Janthinobacterium sp. 77 strain:77 Genome sequencing
Study Abstract
  
SRA Study Id SRP134779
Study Title Flavobacterium sp. 5 strain:5 Genome sequencing
Study Abstract
  
SRA Study Id SRP139232
Study Title Janthinobacterium sp. 78 strain:78 Genome sequencing
Study Abstract
  
SRA Study Id SRP139231
Study Title Acidovorax sp. 94 strain:94 Genome sequencing
Study Abstract
  
SRA Study Id SRP139234
Study Title Acidovorax sp. 99 strain:99 Genome sequencing
Study Abstract
  
SRA Study Id SRP112890
Study Title Synthetic bacterial communities of pure cultures from sediment of Lake Washington, USA, under high oxygen condition - MT methane_oxidizing 14strains_48hour-b metatranscriptome
Study Abstract
  
SRA Study Id SRP139233
Study Title Flavobacterium sp. 81 strain:81 Genome sequencing
Study Abstract
  
SRA Study Id SRP112891
Study Title Synthetic bacterial communities of pure cultures from sediment of Lake Washington, USA, under high oxygen condition - MT methane_oxidizing 14strains_48hour-a metatranscriptome
Study Abstract
  
SRA Study Id SRP139236
Study Title Acidovorax sp. 104 Genome sequencing
Study Abstract
  
SRA Study Id SRP139235
Study Title Flavobacterium sp. 103 Genome sequencing
Study Abstract
  
SRA Study Id SRP134781
Study Title Chryseobacterium sp. 7 strain:7 Genome sequencing
Study Abstract
  
SRA Study Id SRP134780
Study Title Burkholderiales bacterium 23 strain:23 Genome sequencing
Study Abstract
  
SRA Study Id SRP134789
Study Title Chryseobacterium sp. 52 strain:52 Genome sequencing
Study Abstract
  
SRA Study Id SRP134788
Study Title Acidovorax sp. 30 strain:30 Genome sequencing
Study Abstract
  
SRA Study Id SRP134787
Study Title Delftia sp. 60 strain:60 Genome sequencing
Study Abstract
  
SRA Study Id SRP134786
Study Title Variovorax sp. 54 strain:54 Genome sequencing
Study Abstract
  
SRA Study Id SRP134785
Study Title [Flavobacterium] sp. 29 strain:29 Genome sequencing
Study Abstract
  
SRA Study Id SRP134784
Study Title Acidovorax sp. 59 strain:59 Genome sequencing
Study Abstract
  
SRA Study Id SRP134783
Study Title Flavobacterium sp. 11 strain:11 Genome sequencing
Study Abstract
  
SRA Study Id SRP134782
Study Title Janthinobacterium sp. 13 strain:13 Genome sequencing
Study Abstract
  
SRA Study Id SRP139238
Study Title Flavobacterium sp. 102 Genome sequencing
Study Abstract
  
SRA Study Id SRP112892
Study Title Synthetic bacterial communities of pure cultures from sediment of Lake Washington, USA, under high oxygen condition - MT methane_oxidizing 14strains_24hour-b metatranscriptome
Study Abstract
  
SRA Study Id SRP139239
Study Title Acidovorax sp. 100 Genome sequencing
Study Abstract
  
SRA Study Id SRP139241
Study Title Acidovorax sp. 107 Genome sequencing
Study Abstract
  
SRA Study Id SRP139240
Study Title Acidovorax sp. 106 Genome sequencing
Study Abstract
  
SRA Study Id SRP139243
Study Title Simplicispira sp. 110 Genome sequencing
Study Abstract
  
SRA Study Id SRP139242
Study Title Rhodanobacter sp. 113 Genome sequencing
Study Abstract
  
SRA Study Id SRP139245
Study Title Acidovorax sp. 108 Genome sequencing
Study Abstract
  
SRA Study Id SRP139244
Study Title Flavobacterium sp. 109 Genome sequencing
Study Abstract
  
SRA Study Id SRP112880
Study Title Synthetic bacterial communities of pure cultures from sediment of Lake Washington, USA, under high oxygen condition - MT methane_oxidizing 14strains_1hour-b metatranscriptome
Study Abstract
  
SRA Study Id SRP139247
Study Title Bosea sp. 124 Genome sequencing
Study Abstract
  
SRA Study Id SRP139246
Study Title Flavobacterium sp. 120 Genome sequencing
Study Abstract
  
SRA Study Id SRP134792
Study Title Janthinobacterium sp. 64 strain:64 Genome sequencing
Study Abstract
  
SRA Study Id SRP134791
Study Title Janthinobacterium sp. 35 strain:35 Genome sequencing
Study Abstract
  
SRA Study Id SRP134790
Study Title Acidovorax sp. 56 strain:56 Genome sequencing
Study Abstract
  
SRA Study Id SRP134799
Study Title Janthinobacterium sp. 67 strain:67 Genome sequencing
Study Abstract
  
SRA Study Id SRP134798
Study Title Acidovorax sp. 69 strain:69 Genome sequencing
Study Abstract
  
SRA Study Id SRP112889
Study Title Synthetic bacterial communities of pure cultures from sediment of Lake Washington, USA, under high oxygen condition - MT methane_oxidizing 14strains_24hour-a metatranscriptome
Study Abstract
  
SRA Study Id SRP134797
Study Title Acidovorax sp. 62 strain:62 Genome sequencing
Study Abstract
  
SRA Study Id SRP129677
Study Title Synthetic bacterial communities of pure cultures from sediment of Lake Washington, USA, under low oxygen conditions - MT methane_oxidizing 4strains_48hour-a metatranscriptome
Study Abstract
  
SRA Study Id SRP139249
Study Title Simplicispira sp. 125 Genome sequencing
Study Abstract
  
SRA Study Id SRP139212
Study Title Janthinobacterium sp. 75 strain:75 Genome sequencing
Study Abstract
  
SRA Study Id SRP139211
Study Title Acidovorax sp. 76 strain:76 Genome sequencing
Study Abstract
  
SRA Study Id SRP139250
Study Title Flavobacterium sp. 123 Genome sequencing
Study Abstract
  
SRA Study Id SRP134800
Study Title Janthinobacterium sp. 61 strain:61 Genome sequencing
Study Abstract
  
SRA Study Id SRP112872
Study Title Synthetic bacterial communities of pure cultures from sediment of Lake Washington, USA, under low oxygen conditions - MT methane_oxidizing 4strains_24hour-b metatranscriptome
Study Abstract
  
SRA Study Id SRP112870
Study Title Synthetic bacterial communities of pure cultures from sediment of Lake Washington, USA, under low oxygen conditions - MT methane_oxidizing 4strains_1hour-a metatranscriptome
Study Abstract
  
SRA Study Id SRP112871
Study Title Synthetic bacterial communities of pure cultures from sediment of Lake Washington, USA, under low oxygen conditions - MT methane_oxidizing 4strains_24hour-a metatranscriptome
Study Abstract
  
SRA Study Id SRP112876
Study Title Synthetic bacterial communities of pure cultures from sediment of Lake Washington, USA, under high oxygen condition - MT methane_oxidizing 14strains_1hour-a metatranscriptome
Study Abstract
  
SRA Study Id SRP134768
Study Title Flavobacterium sp. 1 strain:1 Genome sequencing
Study Abstract
  
Legacy ER Study ID
Legacy GOLD ID
Added By JGI automated process on 2016-12-14
Last Modified By JGI automated process on 2019-09-06
PI Ludmila Chistoserdova
Description Because the interest for methane-oxidizing organisms (and methane-oxidizing communities) is huge, the goal of the study is to look for the missing links in methane oxidation and sequencing genomes and metatranscriptomes representing understudied and underestimated functional guilds that are parts of methane-oxidizing communities with a goal to detect methane-mitigating activities through detecting ‘community signatures’ and to provide a better resolution to understanding and ultimately modeling microbially mediated global and local cycles, including greenhouse gas cycles.
Relevance
Study Information Link
Study Information Visibility Public
Metagenomic Study Yes
Publication
Is GEBA
Is HMP
ECOSYSTEM CLASSIFICATION
Ecosystem Engineered
Ecosystem Category Modeled
Ecosystem Type Simulated communities (microbial mixture)
Ecosystem Subtype Unclassified
Specific Ecosystem Unclassified
STUDY COMPOSITION
Number of Biosamples 12
Number of Organisms 41
Number of Seq Projects 84
Number of Analysis Projects 80
Number of Related Studies 0

 

 

  You are going to add the following user to ALL Sequencing Projects, Biosamples and Analysis Projects that
sit under this study (a cascading permission update).

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to all Sequencing Projects,
Biosamples and Analysis Projects under this study.

 

Contact Name/Email:

Do you want to continue?