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Study

Study Name: Genome and transcriptome sequencing of fungal pathogens from poplar and pine trees

Projects

Biosamples

Organisms

Biosamples: 108 Seq. Projects: 138
STUDY INFORMATION
GOLD Study ID Gs0121504
Study Name Genome and transcriptome sequencing of fungal pathogens from poplar and pine trees
Other Names
NCBI Umbrella Bioproject Name
NCBI Umbrella Bioproject ID
SRA Studies
SRA Study Id SRP194634  (Link to NCBI )
Study Title Taphrina populi-salicis 419.54 Transcriptome - CBS419.54
Study Abstract
  
SRA Study Id SRP225320  (Link to NCBI )
Study Title Atropellis piniphila CBS 197.64 Transcriptome
Study Abstract
  
SRA Study Id SRP145227  (Link to NCBI )
Study Title Entoleuca mammata CFL468 Transcriptome - CFL468
Study Abstract
  
SRA Study Id SRP145167  (Link to NCBI )
Study Title Gremmeniella abietina DAOM 170408 Transcriptome - CFL2084
Study Abstract
  
SRA Study Id SRP145223  (Link to NCBI )
Study Title Cryptodiaporthe populea CFL2025 Transcriptome - CPT13
Study Abstract
  
SRA Study Id SRP194985  (Link to NCBI )
Study Title Melampsora medusae f. sp. tremuloidae Mmt05Ida529 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP194991  (Link to NCBI )
Study Title Melampsora medusae f. sp. tremuloidae Mmt05Ida529 Transcriptome
Study Abstract
  
SRA Study Id SRP213103  (Link to NCBI )
Study Title Elytroderma deformans 183.68 Transcriptome - CBS183.68
Study Abstract
  
SRA Study Id SRP183805  (Link to NCBI )
Study Title Elytroderma deformans CBS 183.68 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP128243  (Link to NCBI )
Study Title Cryptodiaporthe populea CFL2025 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP183810  (Link to NCBI )
Study Title Taphrina populi-salicis CBS 419.54 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP128240  (Link to NCBI )
Study Title Cytospora chrysosperma CFL2056 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP128223  (Link to NCBI )
Study Title Gremmeniella abietina DAOM 170408 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP179138  (Link to NCBI )
Study Title Melampsora medusae f. sp. deltoidae Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP128245  (Link to NCBI )
Study Title Entoleuca mammata CFL468 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP179139  (Link to NCBI )
Study Title Melampsora medusae f. sp. deltoidae Mmd05TRE539 Transcriptome
Study Abstract
  
SRA Study Id SRP225318  (Link to NCBI )
Study Title Atropellis piniphila CBS 197.64 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP145220  (Link to NCBI )
Study Title Cytospora chrysosperma CFL2056 Transcriptome - CPT17
Study Abstract
  
Legacy ER Study ID
Legacy GOLD ID
Added By JGI automated process on 2016-08-29
Last Modified By JGI automated process on 2019-09-06
PI Richard Hamelin
Description The goal of this study is to examine interaction between pathogens and their hosts, poplar and pines, to get some fundamental insight about the evolution of host specialization and generalist life-styles.
Relevance
Study Information Link
Study Information Visibility Public
Metagenomic Study Yes
Publication
Is GEBA
Is HMP
ECOSYSTEM CLASSIFICATION
Ecosystem Host-associated
Ecosystem Category Plants
Ecosystem Type Phyllosphere
Ecosystem Subtype Unclassified
Specific Ecosystem Unclassified
STUDY COMPOSITION
Number of Biosamples 108
Number of Organisms 18
Number of Seq Projects 138
Number of Analysis Projects 8
Number of Related Studies 0

 

 

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