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Study

Study Name: Expanding fungal reference genomes with early diverging lineages (EDL) of fungi

Projects

Biosamples

Organisms

Biosamples: 8 Seq. Projects: 1283
STUDY INFORMATION
GOLD Study ID Gs0118514
Study Name Expanding fungal reference genomes with early diverging lineages (EDL) of fungi
Other Names
NCBI Umbrella Bioproject Name
NCBI Umbrella Bioproject ID
SRA Studies
SRA Study Id SRP118488
Study Title Phycomyces nitens S608 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP118487
Study Title Cokeromyces recurvatus NRRL 2243 Transcriptome
Study Abstract
  
SRA Study Id SRP118489
Study Title Phycomyces nitens S609 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP118484
Study Title Gongronella butleri CBS 227.36+ Transcriptome
Study Abstract
  
SRA Study Id SRP118486
Study Title Phascolomyces articulosus RSA 2281 Transcriptome
Study Abstract
  
SRA Study Id SRP183617
Study Title Amylomyces rouxii NRRL 5866 Transcriptome - 5866-RNA
Study Abstract
  
SRA Study Id SRP183789
Study Title Geranomyces variabilis JEL559 Transcriptome - JEL559R
Study Abstract
  
SRA Study Id SRP096532
Study Title Chlamydoabsidia padenii NRRL 2977 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP096533
Study Title Blastocladiella britannica JEL711 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP096535
Study Title Globomyces pollinis-pini Arg68 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP183785
Study Title Mucor mucedo Fresen. NRRL 3635 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP135620
Study Title Umbelopsis isabellina AD026 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP152400
Study Title Halteromyces radiatus CBS 162.75 T Transcriptome - HalradRNA
Study Abstract
  
SRA Study Id SRP183787
Study Title Fimicolochytrium jonesii JEL569 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP145143
Study Title Cladochytrium polystomum WB228 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP118476
Study Title Gilbertella persicaria var. persicaria CBS 190.32- Transcriptome
Study Abstract
  
SRA Study Id SRP114272
Study Title Phycomyces nitens S607 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP171623
Study Title Gorgonomyces haynaldii MP57 Transcriptome - MP57R
Study Abstract
  
SRA Study Id SRP114270
Study Title Dichotomocladium elegans RSA 919- Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP118472
Study Title Fennellomyces sp. T-0311 Transcriptome or Gene expression
Study Abstract
  
SRA Study Id SRP118475
Study Title Pilaira anomala RSA1997 Transcriptome
Study Abstract
  
SRA Study Id SRP170251
Study Title Blakeslea trispora F986 Transcriptome - F986R
Study Abstract
  
SRA Study Id SRP096518
Study Title Chytriomyces sp. nov. MP71 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP159344
Study Title Blakeslea trispora F921 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP170253
Study Title Choanephora cucurbitarum NRRL 2744 Transcriptome - CcurRSA2744RNA
Study Abstract
  
SRA Study Id SRP170252
Study Title Dissophora ornata CBS 347.77 Minimal Draft genome sequencing
Study Abstract
  
SRA Study Id SRP152394
Study Title Halteromyces radiatus CBS 162.75 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP159345
Study Title Blakeslea trispora F986 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP157807
Study Title Mixed culture fungal communities from London, United Kingdom - Umbelopsis sp. nov. AD052 Piptocephalis tieghemiana RSA 1565 Co-culture metagenome
Study Abstract
  
SRA Study Id SRP183792
Study Title Mucor mucedo Fresen. NRRL 3635 Transcriptome - Mmucedo3636
Study Abstract
  
SRA Study Id SRP145151
Study Title Cladochytrium polystomum WB228 Transcriptome - WB228R
Study Abstract
  
SRA Study Id SRP171617
Study Title Gorgonomyces haynaldii MP57 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP097057
Study Title Gaertneriomyces semiglobifer Barr 43 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP097499
Study Title Entophlyctis helioformis JEL805 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP194535
Study Title Phycomyces blakesleeanus UBC1 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP194536
Study Title Phycomyces blakesleeanus UBC1 Transcriptome - PB1R
Study Abstract
  
SRA Study Id SRP170247
Study Title Choanephora cucurbitarum NRRL 2744 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP118467
Study Title Coemansia spiralis RSA 1278 Transcriptome
Study Abstract
  
SRA Study Id SRP170249
Study Title Dissophora ornata CBS 347.77 Transcriptome - Dissorn01_RNA
Study Abstract
  
SRA Study Id SRP118500
Study Title Entophlyctis helioformis JEL805 Transcriptome
Study Abstract
  
SRA Study Id SRP137583
Study Title Kirkomyces cordense RSA 1222 T transcriptome
Study Abstract
  
SRA Study Id SRP137464
Study Title Umbelopsis sp.1 AD052 transcriptome
Study Abstract
  
SRA Study Id SRP128220
Study Title Zychaea mexicana RSA 1403 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP153313
Study Title Powellomyces hirtus BR81 Transcriptome - BR81R
Study Abstract
  
SRA Study Id SRP153312
Study Title Triparticalcar arcticum BR59 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP096515
Study Title Phascolomyces articulosus RSA 2281 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP096516
Study Title Gongronella butleri CBS 227.36+ Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP096517
Study Title Gamsiella multidivaricata RSA 2152 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP137466
Study Title Zychaea mexicana RSA 1403 T transcriptome
Study Abstract
  
SRA Study Id SRP118507
Study Title Kickxella alabastrina RSA 675 Transcriptome
Study Abstract
  
SRA Study Id SRP137467
Study Title Sporodiniella umbellata MES-1446 transcriptome - SpoumbRNA
Study Abstract
  
SRA Study Id SRP137468
Study Title Umbelopsis isabellina AD026 transcriptome - Umbisa01_RNA
Study Abstract
  
SRA Study Id SRP137469
Study Title Benjaminiella poitrasii RSA 903 transcriptome - RSA903RNA
Study Abstract
  
SRA Study Id SRP110345
Study Title Kickxella alabastrina RSA 675 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP110344
Study Title Chytridium lagenaria Arg66 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP153319
Study Title Triparticalcar arcticum BR59 Transcriptome - BR59R
Study Abstract
  
SRA Study Id SRP118504
Study Title Chlamydoabsidia padenii NRRL 2977 T Transcriptome
Study Abstract
  
SRA Study Id SRP118499
Study Title Blastocladiella britannica JEL711 Transcriptome
Study Abstract
  
SRA Study Id SRP118498
Study Title Globomyces pollinis-pini Arg68 Transcriptome
Study Abstract
  
SRA Study Id SRP137470
Study Title Paraphysoderma sedebokerense JEL821 transcriptome - JEL821_RNA
Study Abstract
  
SRA Study Id SRP170556
Study Title Helicostylum pulchrum RSA 2064 Transcriptome
Study Abstract
  
SRA Study Id SRP170554
Study Title Helicostylum pulchrum RSA 2064 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP118497
Study Title Chytridium lagenaria Arg66 Transcriptome
Study Abstract
  
SRA Study Id SRP123760
Study Title Dichotomocladium elegans RSA 919- - DeleRSA919RNA
Study Abstract
  
SRA Study Id SRP128218
Study Title Kirkomyces cordense RSA 1222 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP128217
Study Title Sporodiniella umbellata MES-1446 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP118493
Study Title Chytriomyces sp. MP71 Transcriptome or Gene expression
Study Abstract
  
SRA Study Id SRP118492
Study Title Gaertneriomyces semiglobifer Barr 43 Transcriptome
Study Abstract
  
SRA Study Id SRP123763
Study Title Phycomyces nitens S608 Transcriptome - PN8R
Study Abstract
  
SRA Study Id SRP128215
Study Title Paraphysoderma sedebokerense JEL821 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP123764
Study Title Phycomyces nitens S607 Transcriptome - PN7R
Study Abstract
  
SRA Study Id SRP123765
Study Title Mortierella multidivaricata RSA 2152 Transcriptome
Study Abstract
  
SRA Study Id SRP123766
Study Title Phycomyces nitens S609 Transcriptome - PN9R
Study Abstract
  
SRA Study Id SRP110338
Study Title Cokeromyces recurvatus NRRL 2243 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP110337
Study Title Pilaira anomala RSA1997 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP128214
Study Title Umbelopsis sp. AD052 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP145130
Study Title Coemansia mojavensis RSA 71 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP153306
Study Title Hyaloraphidium curvatum SAG235-1 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP110332
Study Title Coemansia spiralis RSA 1278 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP145131
Study Title Coemansia mojavensis RSA 71 Transcriptome - CoemojRNA
Study Abstract
  
SRA Study Id SRP110334
Study Title Fennellomyces sp. T-0311 Standard Draft
Study Abstract
  
SRA Study Id SRP110333
Study Title Gilbertella persicaria var. persicaria CBS 190.32 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP153309
Study Title Hyaloraphidium curvatum SAG235-1 Transcriptome - JEL383R
Study Abstract
  
SRA Study Id SRP153308
Study Title Powellomyces hirtus BR81 Standard Draft genome sequencing
Study Abstract
  
Legacy ER Study ID
Legacy GOLD ID
Added By JGI automated process on 2016-03-25
Last Modified By JGI automated process on 2019-06-18
PI Joseph Spatafora
Description Genomics and transcriptomics of the early diverging lineages (EDL) of fungi and their transition to terrestrial, plant-based ecologies
Relevance
Study Information Link
Study Information Visibility Public
Metagenomic Study Yes
Publication
Is GEBA
Is HMP
ECOSYSTEM CLASSIFICATION
Ecosystem Host-associated
Ecosystem Category Fungi
Ecosystem Type Unclassified
Ecosystem Subtype Unclassified
Specific Ecosystem Unclassified
STUDY COMPOSITION
Number of Biosamples 8
Number of Organisms 1210
Number of Seq Projects 1283
Number of Analysis Projects 29
Number of Related Studies 0

 

 

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