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Study

Study Name: Bacteria isolated from carboxylate platform fermentations inoculated with microbial communities from extreme environments

Projects

Biosamples

Organisms

Biosamples: 1 Seq. Projects: 64
STUDY INFORMATION
GOLD Study ID Gs0118462
Study Name Bacteria isolated from carboxylate platform fermentations inoculated with microbial communities from extreme environments
Other Names
NCBI Umbrella Bioproject Name Bacteria isolated from carboxylate platform fermentations inoculated with microbial communities from extreme environments
NCBI Umbrella Bioproject ID 311332
Legacy ER Study ID
Legacy GOLD ID
Added By Emma Britain Caraway on 2016-03-10
Last Modified By Supratim Mukherjee on 2017-03-13
PI Heather Wilkinson
Description In an effort to identify microbial communities with superior performances in the carboxylate platform for biofuel and high value chemical production, we screened 501 microbial communities from 77 sites across the continental U.S., Hawaii and Puerto Rico as inocula. From the best performing communities, we collected >1800 individual isolates by culturing with a variety of media and oxygen conditions. We generated draft genome sequence for 64 of the isolates, selected based on phylogenetic, ecological, and phenotypic variation. These sequences will be used to advance a system to study 1) the role of diversity in functional types within carboxylate platform fermentation communities, 2) the genetic basis for superior performance in these fermentations and 3) the basis of adaptation to extreme conditions.
Relevance Industrial
Study Information Link
Study Information Visibility Public
Metagenomic Study Yes
Publication
Is GEBA No
Is HMP No
ECOSYSTEM CLASSIFICATION
Ecosystem Environmental
Ecosystem Category Terrestrial
Ecosystem Type Soil
Ecosystem Subtype Unclassified
Specific Ecosystem Forest Soil
STUDY COMPOSITION
Number of Biosamples 1
Number of Organisms 64
Number of Seq Projects 64
Number of Analysis Projects 0
Number of Related Studies 0

 

 

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