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Study

Study Name: Above-ground endophytic microbial communities from plants in different locations in the United States

Projects

Biosamples

Organisms

Biosamples: 100 Seq. Projects: 153
STUDY INFORMATION
GOLD Study ID Gs0116272
Study Name Above-ground endophytic microbial communities from plants in different locations in the United States
Other Names Genome sequencing of diazotrophic endophytes in native pines, poplar and willow
NCBI Umbrella Bioproject Name
NCBI Umbrella Bioproject Accession
SRA Studies
SRA Study Id SRP233969  (Link to NCBI )
Study Title Burkholderia sp. JGI PFNR15_F11_ver2 Genome sequencing
Study Abstract
  
SRA Study Id SRP143408  (Link to NCBI )
Study Title Leaf-associated microbial communities from Abies magnifica in Yosemite National Park, California, United States - Redfir_Yose_1 metagenome
Study Abstract
  
SRA Study Id SRP143404  (Link to NCBI )
Study Title Leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States - Lodgepole_Yose_4 metagenome
Study Abstract
  
SRA Study Id SRP234093  (Link to NCBI )
Study Title Rhizobium sp. JGI PFNR15_G4_ver2 Genome sequencing
Study Abstract
  
SRA Study Id SRP234094  (Link to NCBI )
Study Title Rhizobiales bacterium strain:JGI PFNR15_C20_ver2 Genome sequencing
Study Abstract
  
SRA Study Id SRP154543  (Link to NCBI )
Study Title Sorted cell/s from leaf-associated microbial communities from Abies magnifica in Yosemite National Park, California, United States – Sphingomonadales bacterium JGI AMGPRD042217_7 metagenome
Study Abstract
  
SRA Study Id SRP234090  (Link to NCBI )
Study Title Pseudomonas sp. JGI PFNR15_L22_ver2 Genome sequencing
Study Abstract
  
SRA Study Id SRP244980  (Link to NCBI )
Study Title Rahnella inusitata WP4 genome sequencing
Study Abstract
  
SRA Study Id SRP234091  (Link to NCBI )
Study Title Rhizobium sp. JGI PFNR15_J18_ver2 Genome sequencing
Study Abstract
  
SRA Study Id SRP244981  (Link to NCBI )
Study Title Paraburkholderia bannensis WP4_2_2 genome sequencing
Study Abstract
  
SRA Study Id SRP143411  (Link to NCBI )
Study Title Leaf-associated microbial communities from Abies magnifica in Yosemite National Park, California, United States - Redfir_Yose_2 metagenome
Study Abstract
  
SRA Study Id SRP180838  (Link to NCBI )
Study Title Bacillus thuringiensis LP_2_YM genome sequencing
Study Abstract
  
SRA Study Id SRP180841  (Link to NCBI )
Study Title Bacillus thuringiensis LP_1_YM genome sequencing
Study Abstract
  
SRA Study Id SRP180842  (Link to NCBI )
Study Title Luteibacter rhizovicinus LP_13_YM genome sequencing
Study Abstract
  
SRA Study Id SRP234088  (Link to NCBI )
Study Title Pseudomonas sp. JGI PFNR15_L19_ver2 Genome sequencing
Study Abstract
  
SRA Study Id SRP175133  (Link to NCBI )
Study Title Pseudomonas sp. LP_6_YM strain:LP_6_YM Genome sequencing
Study Abstract
  
SRA Study Id SRP180843  (Link to NCBI )
Study Title Pseudomonas sp. LP_4_YM strain:LP_4_YM Genome sequencing
Study Abstract
  
SRA Study Id SRP234089  (Link to NCBI )
Study Title Rhodanobacter sp. JGI PFNR15_I19_ver2 Genome sequencing
Study Abstract
  
SRA Study Id SRP154532  (Link to NCBI )
Study Title Sorted cell/s from leaf-associated microbial communities from Abies magnifica in Yosemite National Park, California, United States – Rhizobiales bacterium JGI AMGPRD042217_6 metagenome
Study Abstract
  
SRA Study Id SRP175137  (Link to NCBI )
Study Title Burkholderia vietnamiensis WW_17 genome sequencing
Study Abstract
  
SRA Study Id SRP175139  (Link to NCBI )
Study Title Pseudomonas sp. LP_8_YM strain:LP_8_YM Genome sequencing
Study Abstract
  
SRA Study Id SRP088363  (Link to NCBI )
Study Title Rhizobium sp. jgi pfnr15_l4 Genome sequencing
Study Abstract
  
SRA Study Id SRP175141  (Link to NCBI )
Study Title Pseudomonas graminis WP_8 genome sequencing
Study Abstract
  
SRA Study Id SRP154640  (Link to NCBI )
Study Title Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States – Sphingobacteriales bacterium JGI PCGPRD042217_26 metagenome
Study Abstract
  
SRA Study Id SRP175142  (Link to NCBI )
Study Title Ochrobactrum sp. LP_5_YM strain:LP_5_YM Genome sequencing
Study Abstract
  
SRA Study Id SRP088360  (Link to NCBI )
Study Title Rhizobium sp. jgi pfnr15_e18 Genome sequencing
Study Abstract
  
SRA Study Id SRP175145  (Link to NCBI )
Study Title Rhodococcus sp. LP_3_YM strain:LP_3_YM Genome sequencing
Study Abstract
  
SRA Study Id SRP154644  (Link to NCBI )
Study Title Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States – Methanomicrobiales archaeon JGI PCGPRD042217_32 metagenome
Study Abstract
  
SRA Study Id SRP154643  (Link to NCBI )
Study Title Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States – Rhodospirillales bacterium JGI PCGPRD042217_30 metagenome
Study Abstract
  
SRA Study Id SRP154642  (Link to NCBI )
Study Title Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States – Caulobacterales bacterium JGI PCGPRD042217_29 metagenome
Study Abstract
  
SRA Study Id SRP180850  (Link to NCBI )
Study Title Pseudomonas sp. LP_7_YM strain:LP_7_YM Genome sequencing
Study Abstract
  
SRA Study Id SRP154641  (Link to NCBI )
Study Title Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States – Caulobacterales bacterium JGI PCGPRD042217_28 metagenome
Study Abstract
  
SRA Study Id SRP154520  (Link to NCBI )
Study Title Sorted cell/s from leaf-associated microbial communities from Abies magnifica in Yosemite National Park, California, United States – Sphingomonadales bacterium JGI AMGPRD042217_3 metagenome
Study Abstract
  
SRA Study Id SRP154646  (Link to NCBI )
Study Title Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States – Rhodobacterales bacterium JGI PCGPRD042217_33 metagenome
Study Abstract
  
SRA Study Id SRP154525  (Link to NCBI )
Study Title Sorted cell/s from leaf-associated microbial communities from Abies magnifica in Yosemite National Park, California, United States – Rhodospirillales bacterium JGI AMGPRD042217_4 metagenome
Study Abstract
  
SRA Study Id SRP154645  (Link to NCBI )
Study Title Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States – Caulobacterales bacterium JGI PCGPRD042217_31 metagenome
Study Abstract
  
SRA Study Id SRP154529  (Link to NCBI )
Study Title Sorted cell/s from leaf-associated microbial communities from Abies magnifica in Yosemite National Park, California, United States – WD bacterium JGI AMGPRD042217_5 metagenome
Study Abstract
  
SRA Study Id SRP233896  (Link to NCBI )
Study Title Burkholderia sp. JGI PFNR15_C14_ver2 Genome sequencing
Study Abstract
  
SRA Study Id SRP175155  (Link to NCBI )
Study Title Rhodococcus sp. LP_11_YM strain:LP_11_YM Genome sequencing
Study Abstract
  
SRA Study Id SRP154633  (Link to NCBI )
Study Title Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States – Rhodospirillales bacterium JGI PCGPRD042217_23 metagenome
Study Abstract
  
SRA Study Id SRP154632  (Link to NCBI )
Study Title Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States – Sphingobacteriales bacterium JGI PCGPRD042217_21 metagenome
Study Abstract
  
SRA Study Id SRP154631  (Link to NCBI )
Study Title Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States – Enterobacteriales bacterium JGI PCGPRD042217_20 metagenome
Study Abstract
  
SRA Study Id SRP154630  (Link to NCBI )
Study Title Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States – Rickettsiales bacterium JGI PCGPRD042217_18 metagenome
Study Abstract
  
SRA Study Id SRP154636  (Link to NCBI )
Study Title Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States – Caulobacterales bacterium JGI PCGPRD042217_25 metagenome
Study Abstract
  
SRA Study Id SRP154635  (Link to NCBI )
Study Title Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States – Acidobacteriales bacterium JGI PCGPRD042217_24 metagenome
Study Abstract
  
SRA Study Id SRP154634  (Link to NCBI )
Study Title Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States – Sphingomonadales bacterium JGI PCGPRD042217_22 metagenome
Study Abstract
  
SRA Study Id SRP154518  (Link to NCBI )
Study Title Sorted cell/s from leaf-associated microbial communities from Abies magnifica in Yosemite National Park, California, United States – Rhizobiales bacterium JGI AMGPRD042217_2 metagenome
Study Abstract
  
SRA Study Id SRP154639  (Link to NCBI )
Study Title Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States – Bacillales bacterium JGI PCGPRD042217_27 metagenome
Study Abstract
  
SRA Study Id SRP154517  (Link to NCBI )
Study Title Sorted cell/s from leaf-associated microbial communities from Abies magnifica in Yosemite National Park, California, United States – Lactobacillales bacterium JGI AMGPRD042217_1 metagenome
Study Abstract
  
SRA Study Id SRP154582  (Link to NCBI )
Study Title Sorted cell/s from leaf-associated microbial communities from Abies magnifica in Yosemite National Park, California, United States – Sphingomonadales bacterium JGI AMGPRD042217_11 metagenome
Study Abstract
  
SRA Study Id SRP154622  (Link to NCBI )
Study Title Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States – Rhizobiales bacterium JGI PCGPRD042217_14 metagenome
Study Abstract
  
SRA Study Id SRP154588  (Link to NCBI )
Study Title Sorted cell/s from leaf-associated microbial communities from Abies magnifica in Yosemite National Park, California, United States – Sphingomonadales bacterium JGI AMGPRD042217_12 metagenome
Study Abstract
  
SRA Study Id SRP154621  (Link to NCBI )
Study Title Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States – Caulobacterales bacterium JGI PCGPRD042217_13 metagenome
Study Abstract
  
SRA Study Id SRP154620  (Link to NCBI )
Study Title Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States – Rhodospirillales bacterium JGI PCGPRD042217_12 metagenome
Study Abstract
  
SRA Study Id SRP154626  (Link to NCBI )
Study Title Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States – Sphingobacteriales bacterium JGI PCGPRD042217_17 metagenome
Study Abstract
  
SRA Study Id SRP154625  (Link to NCBI )
Study Title Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States – Rhizobiales bacterium JGI PCGPRD042217_16 metagenome
Study Abstract
  
SRA Study Id SRP154623  (Link to NCBI )
Study Title Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States – Sphingobacteriales bacterium JGI PCGPRD042217_15 metagenome
Study Abstract
  
SRA Study Id SRP154629  (Link to NCBI )
Study Title Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States – Sphingobacteriales bacterium JGI PCGPRD042217_19 metagenome
Study Abstract
  
SRA Study Id SRP164131  (Link to NCBI )
Study Title Pseudomonas synxantha finPsuedoS genome sequencing
Study Abstract
  
SRA Study Id SRP164132  (Link to NCBI )
Study Title Rahnella aquatilis WPL_8_1 genome sequencing
Study Abstract
  
SRA Study Id SRP154609  (Link to NCBI )
Study Title Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States – Sphingobacteriales bacterium JGI PCGPRD042217_6 metagenome
Study Abstract
  
SRA Study Id SRP088358  (Link to NCBI )
Study Title Rhizobium sp. JGI PFNR15_M10 Genome sequencing
Study Abstract
  
SRA Study Id SRP088355  (Link to NCBI )
Study Title Rhizobium sp. JGI PFNR15_M14 Genome sequencing
Study Abstract
  
SRA Study Id SRP088356  (Link to NCBI )
Study Title Rhizobium sp. jgi pfnr15_k19 Genome sequencing
Study Abstract
  
SRA Study Id SRP154611  (Link to NCBI )
Study Title Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States – Acidobacteriales bacterium JGI PCGPRD042217_7 metagenome
Study Abstract
  
SRA Study Id SRP154614  (Link to NCBI )
Study Title Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States – Sphingomonadales bacterium JGI PCGPRD042217_9 metagenome
Study Abstract
  
SRA Study Id SRP154612  (Link to NCBI )
Study Title Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States – Rhizobiales bacterium JGI PCGPRD042217_8 metagenome
Study Abstract
  
SRA Study Id SRP154619  (Link to NCBI )
Study Title Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States – Caulobacterales bacterium JGI PCGPRD042217_11 metagenome
Study Abstract
  
SRA Study Id SRP154616  (Link to NCBI )
Study Title Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States – Rhodospirillales bacterium JGI PCGPRD042217_10 metagenome
Study Abstract
  
SRA Study Id SRP164124  (Link to NCBI )
Study Title Enterobacter sp. WPL_7_2 genome sequencing
Study Abstract
  
SRA Study Id SRP164126  (Link to NCBI )
Study Title Rhizobium sp. WW_1 strain:WW_1 Genome sequencing
Study Abstract
  
SRA Study Id SRP164125  (Link to NCBI )
Study Title Pseudomonas sp. WPR_5_2 Genome sequencing
Study Abstract
  
SRA Study Id SRP164128  (Link to NCBI )
Study Title Enterobacter sp. WPR_3_1 Genome sequencing
Study Abstract
  
SRA Study Id SRP233983  (Link to NCBI )
Study Title Pseudomonas sp. JGI PFNR15_D7_ver2 Genome sequencing
Study Abstract
  
SRA Study Id SRP164127  (Link to NCBI )
Study Title Enterobacter sp. WPL_7_1 genome sequencing
Study Abstract
  
SRA Study Id SRP233982  (Link to NCBI )
Study Title Pedobacter sp. JGI PFNR15_M15_ver2 Genome sequencing
Study Abstract
  
SRA Study Id SRP233981  (Link to NCBI )
Study Title Pedobacter sp. JGI PFNR15_N5_ver2 Genome sequencing
Study Abstract
  
SRA Study Id SRP233980  (Link to NCBI )
Study Title Pseudomonas sp. JGI PFNR15_E4_ver2 Genome sequencing
Study Abstract
  
SRA Study Id SRP233984  (Link to NCBI )
Study Title Pseudomonas sp. JGI PFNR15_L18_ver2 Genome sequencing
Study Abstract
  
SRA Study Id SRP154561  (Link to NCBI )
Study Title Sorted cell/s from leaf-associated microbial communities from Abies magnifica in Yosemite National Park, California, United States – Burkholderiales bacterium JGI AMGPRD042217_9 metagenome
Study Abstract
  
SRA Study Id SRP154600  (Link to NCBI )
Study Title Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States – Acidobacteriales bacterium JGI PCGPRD042217_1 metagenome
Study Abstract
  
SRA Study Id SRP154567  (Link to NCBI )
Study Title Sorted cell/s from leaf-associated microbial communities from Abies magnifica in Yosemite National Park, California, United States – Rhizobiales bacterium JGI AMGPRD042217_10 metagenome
Study Abstract
  
SRA Study Id SRP222611  (Link to NCBI )
Study Title Curtobacterium pusillum WPL5_2 genome sequencing
Study Abstract
  
SRA Study Id SRP154604  (Link to NCBI )
Study Title Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States – Rhizobiales bacterium JGI PCGPRD042217_4 metagenome
Study Abstract
  
SRA Study Id SRP154603  (Link to NCBI )
Study Title Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States – Rhodospirillales bacterium JGI PCGPRD042217_3 metagenome
Study Abstract
  
SRA Study Id SRP154601  (Link to NCBI )
Study Title Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States – Rhodospirillales bacterium JGI PCGPRD042217_2 metagenome
Study Abstract
  
SRA Study Id SRP154607  (Link to NCBI )
Study Title Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States – Rhodospirillales bacterium JGI PCGPRD042217_5 metagenome
Study Abstract
  
SRA Study Id SRP233979  (Link to NCBI )
Study Title Burkholderia sp. JGI PFNR15_G12_ver2 Genome sequencing
Study Abstract
  
SRA Study Id SRP233978  (Link to NCBI )
Study Title Limnohabitans sp. JGI PFNR15_C18_ver2 Genome sequencing
Study Abstract
  
SRA Study Id SRP233977  (Link to NCBI )
Study Title Pedobacter sp. JGI PFNR15_F5_ver2 Genome sequencing
Study Abstract
  
SRA Study Id SRP143397  (Link to NCBI )
Study Title Leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States - Lodgepole_Yose_3 metagenome
Study Abstract
  
SRA Study Id SRP233972  (Link to NCBI )
Study Title Burkholderia sp. JGI PFNR15_K9_ver2 Genome sequencing
Study Abstract
  
SRA Study Id SRP233974  (Link to NCBI )
Study Title Burkholderia sp. JGI PFNR15_N6_ver2 Genome sequencing
Study Abstract
  
SRA Study Id SRP233973  (Link to NCBI )
Study Title Burkholderia sp. JGI PFNR15_M12_ver2 Genome sequencing
Study Abstract
  
SRA Study Id SRP222608  (Link to NCBI )
Study Title Pantoea agglomerans WP7 genome sequencing
Study Abstract
  
SRA Study Id SRP154552  (Link to NCBI )
Study Title Sorted cell/s from leaf-associated microbial communities from Abies magnifica in Yosemite National Park, California, United States – Chromatiales bacterium JGI AMGPRD042217_8 metagenome
Study Abstract
  
SRA Study Id SRP222607  (Link to NCBI )
Study Title Curtobacterium flaccumfaciens WW7 genome sequencing
Study Abstract
  
SRA Study Id SRP109555  (Link to NCBI )
Study Title Acetobacteraceae bacterium strain:JGI PFNR15_L19 Genome sequencing
Study Abstract
  
SRA Study Id SRP222609  (Link to NCBI )
Study Title Paraburkholderia tropici WP4_3_2 genome sequencing
Study Abstract
  
SRA Study Id SRP222606  (Link to NCBI )
Study Title Pseudomonas koreensis WW6 genome sequencing
Study Abstract
  
SRA Study Id SRP143393  (Link to NCBI )
Study Title Leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States - Lodgepole_Yose_2 metagenome
Study Abstract
  
SRA Study Id SRP143390  (Link to NCBI )
Study Title Leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States - Lodgepole_Yose_1 metagenome
Study Abstract
  
Legacy ER Study ID
Legacy GOLD ID
Added By JGI automated process on 2015-08-22
Last Modified By JGI automated process on 2019-09-06
PI Carolin Frank
Description The goal of this project is to study the above-ground endophytic communities of several plant species that naturally grow in nutrient limited environments for applications in sustainable agriculture and biofuel production, and reducing the need for artificial N fertilization.
Relevance
Study Information Visibility Public
Metagenomic Study Yes
Publication
Is GEBA
Is HMP
ECOSYSTEM CLASSIFICATION
Ecosystem Host-associated
Ecosystem Category Plants
Ecosystem Type Phyllosphere
Ecosystem Subtype Unclassified
Specific Ecosystem Unclassified
Ecosystem Path ID 4460
STUDY COMPOSITION
Number of Biosamples 100
Number of Organisms 53
Number of Seq Projects 153
Number of Analysis Projects 136
Number of Related Studies 0

 

 

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