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Study

Study Name: Above-ground endophytic microbial communities from plants in different locations in the United States

Projects

Biosamples

Organisms

Biosamples: 101 Seq. Projects: 205
STUDY INFORMATION
GOLD Study ID Gs0116272
Study Name Above-ground endophytic microbial communities from plants in different locations in the United States
Other Names Genome sequencing of diazotrophic endophytes in native pines, poplar and willow
NCBI Umbrella Bioproject Name
NCBI Umbrella Bioproject ID
SRA Studies
SRA Study Id SRP164124
Study Title Enterobacter sp. WPL_7_2 genome sequencing
Study Abstract
  
SRA Study Id SRP164126
Study Title Rhizobium sp. WW_1 strain:WW_1 Genome sequencing
Study Abstract
  
SRA Study Id SRP164125
Study Title Pseudomonas sp. WPR_5_2 Genome sequencing
Study Abstract
  
SRA Study Id SRP164128
Study Title Enterobacter sp. WPR_3_1 Genome sequencing
Study Abstract
  
SRA Study Id SRP143408
Study Title Leaf-associated microbial communities from Abies magnifica in Yosemite National Park, California, United States - Redfir_Yose_1 metagenome
Study Abstract
  
SRA Study Id SRP164127
Study Title Enterobacter sp. WPL_7_1 genome sequencing
Study Abstract
  
SRA Study Id SRP088363
Study Title Rhizobium sp. jgi pfnr15_l4 Genome sequencing
Study Abstract
  
SRA Study Id SRP143404
Study Title Leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States - Lodgepole_Yose_4 metagenome
Study Abstract
  
SRA Study Id SRP175141
Study Title Pseudomonas graminis WP_8 genome sequencing
Study Abstract
  
SRA Study Id SRP175142
Study Title Ochrobactrum sp. LP_5_YM strain:LP_5_YM Genome sequencing
Study Abstract
  
SRA Study Id SRP175145
Study Title Rhodococcus sp. LP_3_YM strain:LP_3_YM Genome sequencing
Study Abstract
  
SRA Study Id SRP088360
Study Title Rhizobium sp. jgi pfnr15_e18 Genome sequencing
Study Abstract
  
SRA Study Id SRP180850
Study Title Pseudomonas sp. LP_7_YM strain:LP_7_YM Genome sequencing
Study Abstract
  
SRA Study Id SRP164131
Study Title Pseudomonas synxantha finPsuedoS genome sequencing
Study Abstract
  
SRA Study Id SRP143411
Study Title Leaf-associated microbial communities from Abies magnifica in Yosemite National Park, California, United States - Redfir_Yose_2 metagenome
Study Abstract
  
SRA Study Id SRP164132
Study Title Rahnella aquatilis WPL_8_1 genome sequencing
Study Abstract
  
SRA Study Id SRP143397
Study Title Leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States - Lodgepole_Yose_3 metagenome
Study Abstract
  
SRA Study Id SRP180838
Study Title Bacillus thuringiensis LP_2_YM genome sequencing
Study Abstract
  
SRA Study Id SRP088358
Study Title Rhizobium sp. JGI PFNR15_M10 Genome sequencing
Study Abstract
  
SRA Study Id SRP088355
Study Title Rhizobium sp. JGI PFNR15_M14 Genome sequencing
Study Abstract
  
SRA Study Id SRP088356
Study Title Rhizobium sp. jgi pfnr15_k19 Genome sequencing
Study Abstract
  
SRA Study Id SRP180841
Study Title Bacillus thuringiensis LP_1_YM genome sequencing
Study Abstract
  
SRA Study Id SRP180842
Study Title Luteibacter rhizovicinus LP_13_YM genome sequencing
Study Abstract
  
SRA Study Id SRP175155
Study Title Rhodococcus sp. LP_11_YM strain:LP_11_YM Genome sequencing
Study Abstract
  
SRA Study Id SRP175133
Study Title Pseudomonas sp. LP_6_YM strain:LP_6_YM Genome sequencing
Study Abstract
  
SRA Study Id SRP180843
Study Title Pseudomonas sp. LP_4_YM strain:LP_4_YM Genome sequencing
Study Abstract
  
SRA Study Id SRP109555
Study Title Acetobacteraceae bacterium strain:JGI PFNR15_L19 Genome sequencing
Study Abstract
  
SRA Study Id SRP175137
Study Title Burkholderia vietnamiensis WW_17 genome sequencing
Study Abstract
  
SRA Study Id SRP175139
Study Title Pseudomonas sp. LP_8_YM strain:LP_8_YM Genome sequencing
Study Abstract
  
SRA Study Id SRP143393
Study Title Leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States - Lodgepole_Yose_2 metagenome
Study Abstract
  
SRA Study Id SRP143390
Study Title Leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States - Lodgepole_Yose_1 metagenome
Study Abstract
  
Legacy ER Study ID
Legacy GOLD ID
Added By JGI automated process on 2015-08-22
Last Modified By JGI automated process on 2019-06-16
PI Carolin Frank
Description The goal of this project is to study the above-ground endophytic communities of several plant species that naturally grow in nutrient limited environments for applications in sustainable agriculture and biofuel production, and reducing the need for artificial N fertilization.
Relevance
Study Information Link
Study Information Visibility Public
Metagenomic Study Yes
Publication
Is GEBA
Is HMP
ECOSYSTEM CLASSIFICATION
Ecosystem Host-associated
Ecosystem Category Plants
Ecosystem Type Phyllosphere
Ecosystem Subtype
Specific Ecosystem
STUDY COMPOSITION
Number of Biosamples 101
Number of Organisms 106
Number of Seq Projects 205
Number of Analysis Projects 186
Number of Related Studies 0

 

 

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