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Study

Study Name: Freshwater and sediment microbial communities from various areas in North America, analyzing microbe dynamics in response to fracking

Projects

Biosamples

Organisms

Biosamples: 40 Seq. Projects: 177
STUDY INFORMATION
GOLD Study ID Gs0114818
Study Name Freshwater and sediment microbial communities from various areas in North America, analyzing microbe dynamics in response to fracking
Other Names Microbial community dynamics in response to fracking in North America
NCBI Umbrella Bioproject Name
NCBI Umbrella Bioproject ID
SRA Studies
SRA Study Id SRP123757
Study Title Thermoplasmatales archaeon JGI SC39-E20 Genome sequencing
Study Abstract
  
SRA Study Id SRP143763
Study Title Metatranscriptome of freshwater microbial communities from pre-fracked creek in Pennsylvania, United States - DR:C
Study Abstract
  
SRA Study Id SRP143762
Study Title Metatranscriptome of freshwater microbial communities from pre-fracked creek in Pennsylvania, United States - EE:C
Study Abstract
  
SRA Study Id SRP153609
Study Title Klebsiella oxytoca 67 genome sequencing
Study Abstract
  
SRA Study Id SRP143765
Study Title Metatranscriptome of freshwater microbial communities from pre-fracked creek in Pennsylvania, United States - WE:C
Study Abstract
  
SRA Study Id SRP143764
Study Title Metatranscriptome of freshwater microbial communities from post-fracked creek in Pennsylvania, United States - LL:C
Study Abstract
  
SRA Study Id SRP153608
Study Title Aeromonas salmonicida 17 genome sequencing
Study Abstract
  
SRA Study Id SRP148018
Study Title Brevibacterium celere 3b_TX genome sequencing
Study Abstract
  
SRA Study Id SRP148017
Study Title Bacillus mycoides DB-1 genome sequencing
Study Abstract
  
SRA Study Id SRP143761
Study Title Metatranscriptome of freshwater microbial communities from post-fracked creek in Pennsylvania, United States - NH:C
Study Abstract
  
SRA Study Id SRP148016
Study Title Bacillus safensis 47a_TX genome sequencing
Study Abstract
  
SRA Study Id SRP148015
Study Title Brevibacterium sanguinis 2b_TX genome sequencing
Study Abstract
  
SRA Study Id SRP155074
Study Title Bacillus aquimaris 97B genome sequencing
Study Abstract
  
SRA Study Id SRP123750
Study Title uncultured Rhodospirillales bacterium strain:JGI SC39-K17 Genome sequencing
Study Abstract
  
SRA Study Id SRP107707
Study Title Synthetic microbial communities from Ohio, USA - SynthPrep_16_END_DS12_MetaG metagenome
Study Abstract
  
SRA Study Id SRP123751
Study Title uncultured Kiloniellales bacterium strain:JGI SC39-F14 Genome sequencing
Study Abstract
  
SRA Study Id SRP107702
Study Title Synthetic microbial communities from Ohio, USA - SynthPrep_1_END_DS7_MetaG metagenome
Study Abstract
  
SRA Study Id SRP143767
Study Title Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2014
Study Abstract
  
SRA Study Id SRP123753
Study Title Uncultured parvibaculum JGI SC39-H5 genome sequencing
Study Abstract
  
SRA Study Id SRP123754
Study Title Uncultured Xanthobacter bacterium JGI SC39-B18 genome sequencing
Study Abstract
  
SRA Study Id SRP143766
Study Title Metatranscriptome of freshwater microbial communities from post-fracked creek in Pennsylvania, United States - AB:C
Study Abstract
  
SRA Study Id SRP107703
Study Title Synthetic microbial communities from Ohio, USA - SynthPrep_5_END_DS10_MetaG metagenome
Study Abstract
  
SRA Study Id SRP123755
Study Title Uncultured parvibaculum JGI SC39-J11 genome sequencing
Study Abstract
  
SRA Study Id SRP123756
Study Title Caulobacter sp. JGI SC39-H11 Genome sequencing
Study Abstract
  
SRA Study Id SRP093063
Study Title uncultured Kiloniellales bacterium strain:JGI SC39-H20 Genome sequencing
Study Abstract
  
SRA Study Id SRP148092
Study Title Vibrio parahaemolyticus 108B genome sequencing
Study Abstract
  
SRA Study Id SRP155077
Study Title Bacillus sp. DB-2 Genome sequencing
Study Abstract
  
SRA Study Id SRP153610
Study Title Raoultella planticola 103 genome sequencing
Study Abstract
  
SRA Study Id SRP155078
Study Title Bacillus subtilis 51_TX genome sequencing
Study Abstract
  
SRA Study Id SRP153614
Study Title Idiomarina sp. 017G Genome sequencing
Study Abstract
  
SRA Study Id SRP148014
Study Title Bacillus oceanisediminis 15_TX genome sequencing
Study Abstract
  
SRA Study Id SRP153613
Study Title Idiomarina Ioihiensis E2 genome sequencing
Study Abstract
  
SRA Study Id SRP148013
Study Title Bacillus oceanisediminis 13_TX genome sequencing
Study Abstract
  
SRA Study Id SRP153612
Study Title Idiomarina sp. H2 strain:H2 Genome sequencing
Study Abstract
  
SRA Study Id SRP148012
Study Title Bacillus licheniformis 19_TX genome sequencing
Study Abstract
  
SRA Study Id SRP153615
Study Title Marinobacter pelagius 114J genome sequencing
Study Abstract
  
SRA Study Id SRP143774
Study Title Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016
Study Abstract
  
SRA Study Id SRP123747
Study Title Alphaproteobacteria bacterium JGI SC39-D17 Genome sequencing
Study Abstract
  
SRA Study Id SRP143773
Study Title Metatranscriptome of freshwater sediment microbial communities from pre-fracked creek in Pennsylvania, United States - G-2016_18
Study Abstract
  
SRA Study Id SRP143776
Study Title Metatranscriptome of freshwater sediment microbial communities from pre-fracked creek in Pennsylvania, United States - G-2016_45
Study Abstract
  
SRA Study Id SRP123749
Study Title Alphaproteobacteria bacterium JGI SC39-G12 Genome sequencing
Study Abstract
  
SRA Study Id SRP143775
Study Title Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - G-2016_31
Study Abstract
  
SRA Study Id SRP143770
Study Title Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2015
Study Abstract
  
SRA Study Id SRP143772
Study Title Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - G-2016_32
Study Abstract
  
SRA Study Id SRP145839
Study Title Idiomarina tainanensis 125Bg genome sequencing
Study Abstract
  
SRA Study Id SRP123061
Study Title Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaT_SC_2013 metatranscriptome
Study Abstract
  
SRA Study Id SRP175138
Study Title Shewanella fodinae 74A genome sequencing
Study Abstract
  
SRA Study Id SRP153607
Study Title Salegentibacter sp. 24 strain:24 Genome sequencing
Study Abstract
  
SRA Study Id SRP171654
Study Title Bacillus cereus 121B genome sequencing
Study Abstract
  
SRA Study Id SRP171652
Study Title Dietzia maris 97 genome sequencing
Study Abstract
  
SRA Study Id SRP107689
Study Title Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013 metagenome
Study Abstract
  
SRA Study Id SRP175140
Study Title Martelella mediterranea 175.2 genome sequencing
Study Abstract
  
SRA Study Id SRP148072
Study Title Rhodobacter sp. 140A Genome sequencing
Study Abstract
  
SRA Study Id SRP148071
Study Title Raoultella planticola 103_o genome sequencing
Study Abstract
  
SRA Study Id SRP148078
Study Title Sunxiuqinia elliptica 114D_o genome sequencing
Study Abstract
  
SRA Study Id SRP148077
Study Title Sunxiuqinia elliptica 114D genome sequencing
Study Abstract
  
SRA Study Id SRP148076
Study Title Marinobacter hydrocarbonoclasticus 114E genome sequencing
Study Abstract
  
SRA Study Id SRP148075
Study Title Shewanella putrefaciens 97 genome sequencing
Study Abstract
  
SRA Study Id SRP117932
Study Title Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaT_SC_2012 metatranscriptome
Study Abstract
  
SRA Study Id SRP148074
Study Title Paenibacillus pabuli DB-3 genome sequencing
Study Abstract
  
SRA Study Id SRP107698
Study Title Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013 metagenome
Study Abstract
  
SRA Study Id SRP107699
Study Title Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 metagenome
Study Abstract
  
SRA Study Id SRP107697
Study Title Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014 metagenome
Study Abstract
  
SRA Study Id SRP107694
Study Title Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 metagenome
Study Abstract
  
SRA Study Id SRP107695
Study Title Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012 metagenome
Study Abstract
  
SRA Study Id SRP107693
Study Title Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 metagenome
Study Abstract
  
SRA Study Id SRP145094
Study Title Bacillus firmus 14_TX genome sequencing
Study Abstract
  
SRA Study Id SRP088623
Study Title uncultured bacterium strain:JGI SC39-E13 Genome sequencing
Study Abstract
  
SRA Study Id SRP193424
Study Title Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaT_CSR_2012 metatranscriptome
Study Abstract
  
SRA Study Id SRP088621
Study Title Thiobacillus sp. JGI SC39-D10 Genome sequencing
Study Abstract
  
SRA Study Id SRP088622
Study Title Caulobacteraceae bacterium JGI SC39-D6 Genome sequencing
Study Abstract
  
SRA Study Id SRP104238
Study Title Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014 metagenome
Study Abstract
  
SRA Study Id SRP104231
Study Title Freshwater microbial communities in response to fracking from Pennsylvania, USA - Allegheny Zone_MetaG_DW_15 metagenome
Study Abstract
  
SRA Study Id SRP104233
Study Title Freshwater microbial communities from Pennsylvania, USA, analyzing microbe dynamics in response to fracking - TARM_MetaG_T_14 metagenome
Study Abstract
  
SRA Study Id SRP088633
Study Title Kiloniellales bacterium JGI SC39-B19 Genome sequencing
Study Abstract
  
SRA Study Id SRP148061
Study Title Idiomarina abyssalis 017G.2 genome sequencing
Study Abstract
  
SRA Study Id SRP104240
Study Title Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaT_ABR_2013 metatranscriptome
Study Abstract
  
SRA Study Id SRP148069
Study Title Idiomarina tainanensis 86_o genome sequencing
Study Abstract
  
SRA Study Id SRP148065
Study Title Idiomarina maritima 125B1 genome sequencing
Study Abstract
  
SRA Study Id SRP148064
Study Title Halomonas xianhensis 6_TX genome sequencing
Study Abstract
  
SRA Study Id SRP148063
Study Title Halomonas ventosae 1_TX genome sequencing
Study Abstract
  
SRA Study Id SRP145843
Study Title Metatranscriptome of freshwater microbial communities from Pennsylvania, United States - DR:GLUT
Study Abstract
  
SRA Study Id SRP088449
Study Title Hydrogenophaga sp. JGI SC37-D6 Genome sequencing
Study Abstract
  
SRA Study Id SRP137382
Study Title Freshwater microbial communities from Pennsylvania, USA, analyzing microbe dynamics in response to fracking - TARM_MetaG_T3_14 metagenome
Study Abstract
  
SRA Study Id SRP088447
Study Title bacterium JGI SC37-C12 Genome sequencing
Study Abstract
  
SRA Study Id SRP145841
Study Title Marinobacter hydrocarbonoclasticus 105B genome sequencing
Study Abstract
  
SRA Study Id SRP145842
Study Title Marinilabilia salmonicolor 160A genome sequencing
Study Abstract
  
SRA Study Id SRP155090
Study Title Paenibacillus taichungensis DB-4 genome sequencing
Study Abstract
  
SRA Study Id SRP145840
Study Title Marinobacter hydrocarbonoclasticus 114E_o genome sequencing
Study Abstract
  
SRA Study Id SRP155095
Study Title Vibrio diazotrophicus 99A genome sequencing
Study Abstract
  
SRA Study Id SRP088440
Study Title bacterium JGI SC37-E21 Genome sequencing
Study Abstract
  
SRA Study Id SRP164129
Study Title Freshwater microbial communities from Pennsylvania, USA, analyzing microbe dynamics in response to fracking - TARM_MetaG_T3A_14 metagenome
Study Abstract
  
SRA Study Id SRP104259
Study Title Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 metagenome
Study Abstract
  
SRA Study Id SRP104254
Study Title Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012 metagenome
Study Abstract
  
SRA Study Id SRP104253
Study Title Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014 metagenome
Study Abstract
  
SRA Study Id SRP104252
Study Title Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 metagenome
Study Abstract
  
SRA Study Id SRP148036
Study Title Idiomarina aquatica 18_TX genome sequencing
Study Abstract
  
SRA Study Id SRP148034
Study Title Idiomarina loihiensis H2.2 genome sequencing
Study Abstract
  
SRA Study Id SRP148033
Study Title Chromohalobacter salexigens 40a_TX genome sequencing
Study Abstract
  
SRA Study Id SRP088618
Study Title Ancylobacter sp. JGI SC39-N9 Genome sequencing
Study Abstract
  
SRA Study Id SRP123729
Study Title Hydrogenophaga sp. JGI SC37-E5 Genome sequencing
Study Abstract
  
SRA Study Id SRP088619
Study Title Magnetospirillum gryphiswaldense JGI SC39-F21 genome sequencing
Study Abstract
  
SRA Study Id SRP088616
Study Title beta proteobacterium JGI SC39-G4 Genome sequencing
Study Abstract
  
SRA Study Id SRP088617
Study Title Rhizobiaceae bacterium JGI SC39-K5 Genome sequencing
Study Abstract
  
SRA Study Id SRP088450
Study Title bacterium JGI SC37-K22 Genome sequencing
Study Abstract
  
SRA Study Id SRP155081
Study Title Paenibacillus pabuli NG-13 genome sequencing
Study Abstract
  
SRA Study Id SRP155083
Study Title Bacillus subtilis 140B genome sequencing
Study Abstract
  
SRA Study Id SRP163939
Study Title Freshwater microbial communities from Pennsylvania, USA, analyzing microbe dynamics in response to fracking - TARM_MetaG_T2_14 metagenome
Study Abstract
  
Legacy ER Study ID
Legacy GOLD ID
Added By Regina Lamendella on 2015-06-11
Last Modified By JGI automated process on 2019-06-18
PI Regina Lamendella
Description Systems Biology Approach to study microbial community dynamics in response to fracking for environmental monitoring
Relevance Environmental
Bioremediation
Study Information Link
Study Information Visibility Public
Metagenomic Study Yes
Publication
Is GEBA No
Is HMP No
ECOSYSTEM CLASSIFICATION
Ecosystem Environmental
Ecosystem Category Aquatic
Ecosystem Type Sediment
Ecosystem Subtype Unclassified
Specific Ecosystem Unclassified
STUDY COMPOSITION
Number of Biosamples 40
Number of Organisms 137
Number of Seq Projects 177
Number of Analysis Projects 160
Number of Related Studies 0

 

 

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