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Study

Study Name: The Hungate 1000. A catalogue of reference genomes from the rumen microbiome.

Projects

Biosamples

Organisms

Biosamples: 1 Seq. Projects: 419
STUDY INFORMATION
GOLD Study ID Gs0033970
Study Name The Hungate 1000. A catalogue of reference genomes from the rumen microbiome.
Other Names
NCBI Umbrella Bioproject Name
NCBI Umbrella Bioproject ID
SRA Studies
SRA Study Id SRP086369
Study Title Prevotella sp. BP1-145 genome sequencing
Study Abstract
  
SRA Study Id SRP086368
Study Title Eubacterium callanderi NLAE-zl-G225 genome sequencing
Study Abstract
  
SRA Study Id SRP084624
Study Title Bacteroides thetaiotaomicron strain:KPPR-3 Genome sequencing
Study Abstract
  
SRA Study Id SRP084626
Study Title Actinomyces nasicola strain:KPR-1 Genome sequencing
Study Abstract
  
SRA Study Id SRP084625
Study Title Terrisporobacter glycolicus strain:KPPR-9 Genome sequencing
Study Abstract
  
SRA Study Id SRP086361
Study Title Prevotella sp. TF2-5 genome sequencing
Study Abstract
  
SRA Study Id SRP074939
Study Title Lachnospiraceae bacterium MD2004 Genome sequencing
Study Abstract
  
SRA Study Id SRP074938
Study Title Selenomonas sp. ND2010 Genome sequencing
Study Abstract
  
SRA Study Id SRP086360
Study Title Prevotella sp. TC2-24 genome sequencing
Study Abstract
  
SRA Study Id SRP086363
Study Title Micrococcus luteus VTM4R57 genome sequencing
Study Abstract
  
SRA Study Id SRP074937
Study Title Lachnospiraceae bacterium NC2008 Genome sequencing
Study Abstract
  
SRA Study Id SRP086362
Study Title Lachnoclostridium citroniae NLAE-zl-G70 genome sequencing
Study Abstract
  
SRA Study Id SRP074936
Study Title Kandleria vitulina MC3001 Genome sequencing
Study Abstract
  
SRA Study Id SRP103223
Study Title Ruminococcaceae bacterium strain:KHP2 Genome sequencing
Study Abstract
  
SRA Study Id SRP086365
Study Title Prevotella ruminicola BPI-34 genome sequencing
Study Abstract
  
SRA Study Id SRP086364
Study Title Prevotella sp. BP1-148 genome sequencing
Study Abstract
  
SRA Study Id SRP086367
Study Title Bacillus licheniformis VTM3R78 genome sequencing
Study Abstract
  
SRA Study Id SRP086366
Study Title Bacteroides xylanisolvens NLAE-zl-G339 genome sequencing
Study Abstract
  
SRA Study Id SRP074942
Study Title Lachnospiraceae bacterium V9D3004 Genome sequencing
Study Abstract
  
SRA Study Id SRP074941
Study Title Lachnospiraceae bacterium ND2006 Genome sequencing
Study Abstract
  
SRA Study Id SRP074940
Study Title Megasphaera elsdenii T81 Genome sequencing
Study Abstract
  
SRA Study Id SRP074946
Study Title Ruminococcaceae bacterium AB4001 Genome sequencing
Study Abstract
  
SRA Study Id SRP074945
Study Title Prevotella brevis P6B11 Genome sequencing
Study Abstract
  
SRA Study Id SRP074944
Study Title Succinivibrio dextrinosolvens H5 strain:H5 Genome sequencing
Study Abstract
  
SRA Study Id SRP074943
Study Title Lachnospiraceae bacterium NC2004 Genome sequencing
Study Abstract
  
SRA Study Id SRP084617
Study Title Acidaminococcus fermentans strain:pGA-4 Genome sequencing
Study Abstract
  
SRA Study Id SRP084616
Study Title Peptostreptococcaceae bacterium pGA-8 Genome sequencing
Study Abstract
  
SRA Study Id SRP084631
Study Title Basfia succiniciproducens strain:KPR-2 Genome sequencing
Study Abstract
  
SRA Study Id SRP087900
Study Title Butyrivibrio sp. M55 Genome sequencing
Study Abstract
  
SRA Study Id SRP084632
Study Title Desulfovibrio desulfuricans strain:DSM 7057 Genome sequencing
Study Abstract
  
SRA Study Id SRP087903
Study Title Citrobacter sp. NLAE-zl-C269 Genome sequencing
Study Abstract
  
SRA Study Id SRP087904
Study Title Selenomonas ruminantium L14 genome sequencing
Study Abstract
  
SRA Study Id SRP087901
Study Title Morganella morganii NLAE-zl-C84 genome sequencing
Study Abstract
  
SRA Study Id SRP087902
Study Title Lachnospira pectinoschiza M83 genome sequencing
Study Abstract
  
SRA Study Id SRP086372
Study Title Clostridium innocuum NLAE-zl-G197 genome sequencing
Study Abstract
  
SRA Study Id SRP086371
Study Title Succiniclasticum ruminis DSM11005 genome sequencing
Study Abstract
  
SRA Study Id SRP074949
Study Title Oribacterium sp. P6A1 Genome sequencing
Study Abstract
  
SRA Study Id SRP086374
Study Title Clostridium cadaveris NLAE-zl-G419 genome sequencing
Study Abstract
  
SRA Study Id SRP074947
Study Title Methanobrevibacter wolinii SH strain:SH Genome sequencing
Study Abstract
  
SRA Study Id SRP086373
Study Title Staphylococcus epidermidis NLAE-zl-G239 genome sequencing
Study Abstract
  
SRA Study Id SRP086376
Study Title Proteus mirabilis NLAE-zl-G534 genome sequencing
Study Abstract
  
SRA Study Id SRP086375
Study Title Selenomonas ruminatium S137 genome sequencing
Study Abstract
  
SRA Study Id SRP103235
Study Title Clostridiales bacterium strain:WTE2008 Genome sequencing
Study Abstract
  
SRA Study Id SRP103236
Study Title Micrococcales bacterium KH10 Genome sequencing
Study Abstract
  
SRA Study Id SRP074953
Study Title Lachnospiraceae bacterium C6A11 Genome sequencing
Study Abstract
  
SRA Study Id SRP103231
Study Title Lachnospiraceae bacterium strain:KH1P17 Genome sequencing
Study Abstract
  
SRA Study Id SRP074952
Study Title Bacteroides sp. Ga6A1 Genome sequencing
Study Abstract
  
SRA Study Id SRP074951
Study Title Prevotella ruminicola Ga6B6 Genome sequencing
Study Abstract
  
SRA Study Id SRP103232
Study Title Olsenella sp. KH1P3 Genome sequencing
Study Abstract
  
SRA Study Id SRP074950
Study Title Bacteroides sp. Ga6A2 Genome sequencing
Study Abstract
  
SRA Study Id SRP053557
Study Title Butyrivibrio sp. AE3009
Study Abstract
  
SRA Study Id SRP074957
Study Title Propionibacteriaceae bacterium P6A17 Genome sequencing
Study Abstract
  
SRA Study Id SRP074955
Study Title Lachnobacterium bovis C6A12 Genome sequencing
Study Abstract
  
SRA Study Id SRP086370
Study Title Clostridium sp. DSM8431 genome sequencing
Study Abstract
  
SRA Study Id SRP053556
Study Title Butyrivibrio sp. FCS006
Study Abstract
  
SRA Study Id SRP074954
Study Title Treponema sp. C6A8 Genome sequencing
Study Abstract
  
SRA Study Id SRP084628
Study Title Streptococcus gallolyticus strain:VTM1R27 Genome sequencing
Study Abstract
  
SRA Study Id SRP086346
Study Title Butyrivibrio fibrisolvens AR40 genome sequencing
Study Abstract
  
SRA Study Id SRP088766
Study Title Olsenella sp. KH3B4 genome sequencing
Study Abstract
  
SRA Study Id SRP084600
Study Title Lachnobacterium bovis DSM 14045 Genome sequencing
Study Abstract
  
SRA Study Id SRP086341
Study Title Pseudobutyrivibrio sp. JW11 Genome sequencing
Study Abstract
  
SRA Study Id SRP086340
Study Title Butyrivibrio proteoclasticus P18 genome sequencing
Study Abstract
  
SRA Study Id SRP086343
Study Title Eubacterium ruminantium 2388 genome sequencing
Study Abstract
  
SRA Study Id SRP086342
Study Title Streptococcus bovis C277 genome sequencing
Study Abstract
  
SRA Study Id SRP086345
Study Title Streptococcus bovis ES1 genome sequencing
Study Abstract
  
SRA Study Id SRP086344
Study Title Megasphaera elsdenii J1 genome sequencing
Study Abstract
  
SRA Study Id SRP074924
Study Title Lachnospira multipara LB2003 Genome sequencing
Study Abstract
  
SRA Study Id SRP086358
Study Title Oscillibacter sp. PC13 Genome sequencing
Study Abstract
  
SRA Study Id SRP086357
Study Title Ruminococcus flavefaciens Y1 genome sequencing
Study Abstract
  
SRA Study Id SRP084611
Study Title Lachnospiraceae bacterium A10 Genome sequencing
Study Abstract
  
SRA Study Id SRP086359
Study Title Prevotella sp. TC2-28 genome sequencing
Study Abstract
  
SRA Study Id SRP084610
Study Title Pseudobutyrivibrio sp. ACV-2 Genome sequencing
Study Abstract
  
SRA Study Id SRP084613
Study Title Succinivibrio dextrinosolvens strain:ACV-10 Genome sequencing
Study Abstract
  
SRA Study Id SRP084612
Study Title Pseudobutyrivibrio ruminis strain:ACV-9 Genome sequencing
Study Abstract
  
SRA Study Id SRP084615
Study Title Selenomonas ruminantium strain:GACV-9 Genome sequencing
Study Abstract
  
SRA Study Id SRP084614
Study Title Streptococcus equinus strain:GA-1 Genome sequencing
Study Abstract
  
SRA Study Id SRP074928
Study Title Lachnospiraceae bacterium AD3010 Genome sequencing
Study Abstract
  
SRA Study Id SRP074927
Study Title Lachnospiraceae bacterium FE2018 Genome sequencing
Study Abstract
  
SRA Study Id SRP074926
Study Title Fusobacterium necrophorum HUN048 Genome sequencing
Study Abstract
  
SRA Study Id SRP074925
Study Title Lachnospiraceae bacterium FD2005 Genome sequencing
Study Abstract
  
SRA Study Id SRP086356
Study Title Treponema bryantii B25 genome sequencing
Study Abstract
  
SRA Study Id SRP074929
Study Title Ruminococcus flavefaciens MC2020 Genome sequencing
Study Abstract
  
SRA Study Id SRP086355
Study Title Succinivibrio dextrinosolvens 22B genome sequencing
Study Abstract
  
SRA Study Id SRP074931
Study Title Ruminococcus sp. FC2018 Genome sequencing
Study Abstract
  
SRA Study Id SRP074930
Study Title Ruminococcus flavefaciens MA2007 Genome sequencing
Study Abstract
  
SRA Study Id SRP072632
Study Title Lachnospiraceae bacterium NK3A20
Study Abstract
  
SRA Study Id SRP074935
Study Title Ruminococcus flavefaciens ND2009 Genome sequencing
Study Abstract
  
SRA Study Id SRP074934
Study Title Pseudobutyrivibrio sp. MD2005 Genome sequencing
Study Abstract
  
SRA Study Id SRP074933
Study Title Butyrivibrio sp. NC2002 Genome sequencing
Study Abstract
  
SRA Study Id SRP074932
Study Title Clostridium beijerinckii HUN142 Genome sequencing
Study Abstract
  
SRA Study Id SRP084606
Study Title Basfia succiniciproducens strain:DSM 22022 Genome sequencing
Study Abstract
  
SRA Study Id SRP084608
Study Title Butyrivibrio hungatei strain:XBD2006 Genome sequencing
Study Abstract
  
SRA Study Id SRP084607
Study Title Streptococcus henryi strain:A-4 Genome sequencing
Study Abstract
  
SRA Study Id SRP092723
Study Title Selenomonas ruminantium subsp. lactilytica strain:DSM 2872 Genome sequencing
Study Abstract
  
SRA Study Id SRP085195
Study Title Sarcina sp. dsm 11001 Genome sequencing
Study Abstract
  
SRA Study Id SRP085194
Study Title Streptococcus gallolyticus VTM3R24 genome sequencing
Study Abstract
  
SRA Study Id SRP085199
Study Title Pseudobutyrivibrio sp. or37 Genome sequencing
Study Abstract
  
SRA Study Id SRP085198
Study Title Streptococcus gallolyticus VTM1R29 genome sequencing
Study Abstract
  
SRA Study Id SRP073896
Study Title Lachnospiraceae bacterium AB2028 Genome sequencing
Study Abstract
  
SRA Study Id SRP074986
Study Title Lachnospira multipara MC2003 Genome sequencing
Study Abstract
  
SRA Study Id SRP073897
Study Title Lachnospiraceae bacterium AC2014 Genome sequencing
Study Abstract
  
SRA Study Id SRP074985
Study Title Anaerovibrio sp. RM50 Genome sequencing
Study Abstract
  
SRA Study Id SRP073894
Study Title Selenomonas sp. AE3005 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP074984
Study Title Prevotella sp. RM4 Genome sequencing
Study Abstract
  
SRA Study Id SRP073895
Study Title Lachnospiraceae bacterium AC3007 Genome sequencing
Study Abstract
  
SRA Study Id SRP074983
Study Title Streptococcus equinus 2B strain:2B Genome sequencing
Study Abstract
  
SRA Study Id SRP085191
Study Title Streptococcus gallolyticus VTM2R47 genome sequencing
Study Abstract
  
SRA Study Id SRP085190
Study Title Streptococcus equinus pR-5 genome sequencing
Study Abstract
  
SRA Study Id SRP085193
Study Title Enterococcus sp. KPPR-6 genome sequencing
Study Abstract
  
SRA Study Id SRP073898
Study Title Selenomonas sp. FC4001 Genome sequencing
Study Abstract
  
SRA Study Id SRP074987
Study Title Lachnospiraceae bacterium YSB2008 Genome sequencing
Study Abstract
  
SRA Study Id SRP085192
Study Title Pseudobutyrivibrio sp. uc1225 Genome sequencing
Study Abstract
  
SRA Study Id SRP073899
Study Title Lachnospiraceae bacterium AC2028 Genome sequencing
Study Abstract
  
SRA Study Id SRP074982
Study Title Ruminobacter sp. RM87 Genome sequencing
Study Abstract
  
SRA Study Id SRP074981
Study Title Proteiniclasticum ruminis DSM 24773 Genome sequencing
Study Abstract
  
SRA Study Id SRP074980
Study Title Selenomonas bovis 8-14-1 Genome sequencing
Study Abstract
  
SRA Study Id SRP053590
Study Title Bifidobacterium sp. AGR2158
Study Abstract
  
SRA Study Id SRP087910
Study Title Streptococcus equinus Sb04 genome sequencing
Study Abstract
  
SRA Study Id SRP087911
Study Title Streptococcus equinus Sb05 genome sequencing
Study Abstract
  
SRA Study Id SRP087914
Study Title Streptococcus equinus AR3 genome sequencing
Study Abstract
  
SRA Study Id SRP087915
Study Title Streptococcus equinus MPR4 genome sequencing
Study Abstract
  
SRA Study Id SRP087912
Study Title Streptococcus equinus Sb10 genome sequencing
Study Abstract
  
SRA Study Id SRP087913
Study Title Streptococcus equinus Sb13 genome sequencing
Study Abstract
  
SRA Study Id SRP085173
Study Title Ruminococcus flavefaciens XPD3002 genome sequencing
Study Abstract
  
SRA Study Id SRP085172
Study Title Treponema bryantii XBD1002 genome sequencing
Study Abstract
  
SRA Study Id SRP085175
Study Title Clostridium polysaccharolyticum DSM 1801 genome sequencing
Study Abstract
  
SRA Study Id SRP074959
Study Title Lachnospiraceae bacterium P6A3 Genome sequencing
Study Abstract
  
SRA Study Id SRP074958
Study Title Corynebacterium vitaeruminis Ga6A13 Genome sequencing
Study Abstract
  
SRA Study Id SRP085174
Study Title Prevotella sp. KHP1 genome sequencing
Study Abstract
  
SRA Study Id SRP085176
Study Title Streptococcus gordonii strain:LMG 15572 Genome sequencing
Study Abstract
  
SRA Study Id SRP074964
Study Title Lachnospiraceae bacterium P6B14 Genome sequencing
Study Abstract
  
SRA Study Id SRP074963
Study Title Butyrivibrio proteoclasticus P6B7 Genome sequencing
Study Abstract
  
SRA Study Id SRP074962
Study Title Prevotella sp. P6B4 Genome sequencing
Study Abstract
  
SRA Study Id SRP074961
Study Title Prevotella sp. P6B1 Genome sequencing
Study Abstract
  
SRA Study Id SRP074968
Study Title Bifidobacterium adolescentis DSM 20087 Genome sequencing
Study Abstract
  
SRA Study Id SRP025355
Study Title Streptococcus bovis SN033
Study Abstract
  
SRA Study Id SRP074967
Study Title Bifidobacterium pseudolongum subsp. globosum DSM 20092 Genome sequencing
Study Abstract
  
SRA Study Id SRP074966
Study Title Bifidobacterium ruminantium DSM 6489 Genome sequencing
Study Abstract
  
SRA Study Id SRP087907
Study Title Prevotella ruminicola D31d genome sequencing
Study Abstract
  
SRA Study Id SRP087908
Study Title Bacteroides ovatus NLAE-zl-C500 genome sequencing
Study Abstract
  
SRA Study Id SRP087905
Study Title Streptococcus sp. 45 strain:45 Genome sequencing
Study Abstract
  
SRA Study Id SRP087906
Study Title Selenomonas ruminantium HD4 genome sequencing
Study Abstract
  
SRA Study Id SRP077314
Study Title Ruminococcus sp. HUN007 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP078089
Study Title [Ruminococcus] gnavus AGR2154 Genome sequencing
Study Abstract
  
SRA Study Id SRP087909
Study Title Streptococcus equinus H24 genome sequencing
Study Abstract
  
SRA Study Id SRP087921
Study Title Prevotella ruminicola AR32 genome sequencing
Study Abstract
  
SRA Study Id SRP078096
Study Title Butyrivibrio sp. AE3003 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP087922
Study Title Streptococcus equinus Sb20 genome sequencing
Study Abstract
  
SRA Study Id SRP078097
Study Title Ruminococcus sp. NK3A76 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP078098
Study Title Lachnobacterium bovis strain:AE2004 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP087920
Study Title Streptococcus equinus SI genome sequencing
Study Abstract
  
SRA Study Id SRP087925
Study Title Streptococcus equinus MPR2 genome sequencing
Study Abstract
  
SRA Study Id SRP087923
Study Title Streptococcus equinus Sb09 genome sequencing
Study Abstract
  
SRA Study Id SRP087924
Study Title Megamonas sp. Calf98-2 Genome sequencing
Study Abstract
  
SRA Study Id SRP074969
Study Title Sharpea azabuensis DSM 18934 Genome sequencing
Study Abstract
  
SRA Study Id SRP078090
Study Title Pseudobutyrivibrio ruminis HUN009 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP085188
Study Title Streptococcus gallolyticus VTM3R42 genome sequencing
Study Abstract
  
SRA Study Id SRP085187
Study Title Escherichia coli PA-3 genome sequencing
Study Abstract
  
SRA Study Id SRP085189
Study Title Streptococcus equinus pGA-7 genome sequencing
Study Abstract
  
SRA Study Id SRP074975
Study Title Mitsuokella jalaludinii DSM 13811 Genome sequencing
Study Abstract
  
SRA Study Id SRP074974
Study Title Bifidobacterium thermophilum DSM 20212 Genome sequencing
Study Abstract
  
SRA Study Id SRP074973
Study Title Kandleria vitulina WCE2011 Genome sequencing
Study Abstract
  
SRA Study Id SRP074972
Study Title Blautia schinkii DSM 10518 Genome sequencing
Study Abstract
  
SRA Study Id SRP085180
Study Title Sharpea azabuensis DSM 20406 genome sequencing
Study Abstract
  
SRA Study Id SRP077689
Study Title Lachnospiraceae bacterium AC2029 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP074978
Study Title Kandleria vitulina DSM 20405 Genome sequencing
Study Abstract
  
SRA Study Id SRP074977
Study Title Clostridium lundense DSM 17049 Genome sequencing
Study Abstract
  
SRA Study Id SRP085182
Study Title Prevotella sp. LC2012 genome sequencing
Study Abstract
  
SRA Study Id SRP025368
Study Title Butyrivibrio sp. VCB2001
Study Abstract
  
SRA Study Id SRP074976
Study Title [Clostridium] aerotolerans DSM 5434 Genome sequencing
Study Abstract
  
SRA Study Id SRP087918
Study Title Streptococcus equinus Sb18 genome sequencing
Study Abstract
  
SRA Study Id SRP087919
Study Title Streptococcus equinus Ye01 genome sequencing
Study Abstract
  
SRA Study Id SRP077686
Study Title Butyrivibrio sp. AE2032 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP077687
Study Title Lactobacillus plantarum strain:AG30 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP087916
Study Title Streptococcus equinus MPR1 genome sequencing
Study Abstract
  
SRA Study Id SRP087917
Study Title Streptococcus equinus Sb17 genome sequencing
Study Abstract
  
SRA Study Id SRP074971
Study Title Butyrivibrio sp. WCE2006 Genome sequencing
Study Abstract
  
SRA Study Id SRP078099
Study Title Lactococcus lactis subsp. lactis strain:511 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP074970
Study Title Bifidobacterium boum DSM 20432 Genome sequencing
Study Abstract
  
SRA Study Id SRP087855
Study Title Prevotella sp. KH2C16 Genome sequencing
Study Abstract
  
SRA Study Id SRP087856
Study Title Eubacterium pyruvativorans KHGC13 genome sequencing
Study Abstract
  
SRA Study Id SRP087853
Study Title Oribacterium sp. KHPX15 Genome sequencing
Study Abstract
  
SRA Study Id SRP087854
Study Title Lactobacillus mucosae WCC8 genome sequencing
Study Abstract
  
SRA Study Id SRP082840
Study Title Butyrivibrio sp. INlla18 Genome sequencing
Study Abstract
  
SRA Study Id SRP087859
Study Title Bacteroides xylanisolvens NLAE-zl-C202 genome sequencing
Study Abstract
  
SRA Study Id SRP082841
Study Title Butyrivibrio sp. YAB3001 Genome sequencing
Study Abstract
  
SRA Study Id SRP082842
Study Title Denitrobacterium detoxificans strain:DSM 21843 Genome sequencing
Study Abstract
  
SRA Study Id SRP087857
Study Title Desulfovibrio legallii KHC7 genome sequencing
Study Abstract
  
SRA Study Id SRP082843
Study Title Ruminococcaceae bacterium YAD3003 Genome sequencing
Study Abstract
  
SRA Study Id SRP082844
Study Title Lachnospiraceae bacterium YSD2013 Genome sequencing
Study Abstract
  
SRA Study Id SRP087858
Study Title Pseudobutyrivibrio sp. 49 Genome sequencing
Study Abstract
  
SRA Study Id SRP025374
Study Title Lachnobacterium bovis NK4B19
Study Abstract
  
SRA Study Id SRP087851
Study Title Prevotella bryantii KHPX14 genome sequencing
Study Abstract
  
SRA Study Id SRP087852
Study Title Lactobacillus mucosae KHPC15 genome sequencing
Study Abstract
  
SRA Study Id SRP087850
Study Title Olsenella umbonata KHGC19 genome sequencing
Study Abstract
  
SRA Study Id SRP078107
Study Title Enterococcus faecalis 68A Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP078108
Study Title Enterococcus gallinarum strain:SKF1 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP078109
Study Title Lactobacillus mucosae strain:AGR63 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP078103
Study Title Butyrivibrio sp. AE3004 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP082835
Study Title Ruminobacter amylophilus strain:DSM 1361 Genome sequencing
Study Abstract
  
SRA Study Id SRP082837
Study Title Butyrivibrio sp. INlla14 Genome sequencing
Study Abstract
  
SRA Study Id SRP082838
Study Title Lachnospiraceae bacterium NE2001 Genome sequencing
Study Abstract
  
SRA Study Id SRP082839
Study Title Lachnospiraceae bacterium XBB1006 Genome sequencing
Study Abstract
  
SRA Study Id SRP078100
Study Title Butyrivibrio sp. FCS014 Genome sequencing
Study Abstract
  
SRA Study Id SRP078101
Study Title Ruminococcus flavefaciens AE3010 Genome sequencing
Study Abstract
  
SRA Study Id SRP078102
Study Title Pediococcus acidilactici AGR20 Genome sequencing
Study Abstract
  
SRA Study Id SRP084598
Study Title Lachnospiraceae bacterium XBD2001 Genome sequencing
Study Abstract
  
SRA Study Id SRP087866
Study Title Bacteroides thetaiotaomicron NLAE-zl-C579 genome sequencing
Study Abstract
  
SRA Study Id SRP085203
Study Title Clostridium aminophilum KH1P1 genome sequencing
Study Abstract
  
SRA Study Id SRP087867
Study Title Acinetobacter sp. DSM 11652 isolate:DSM 11652 Genome sequencing
Study Abstract
  
SRA Study Id SRP085202
Study Title Sharpea azabuensis KH1P5 genome sequencing
Study Abstract
  
SRA Study Id SRP082850
Study Title Lachnospiraceae bacterium XBB2008 Genome sequencing
Study Abstract
  
SRA Study Id SRP087864
Study Title Clostridium cochlearium NLAE-zl-C224 genome sequencing
Study Abstract
  
SRA Study Id SRP085205
Study Title Enterobacter sp. KPR-6 genome sequencing
Study Abstract
  
SRA Study Id SRP085204
Study Title Prevotella sp. KHP7 genome sequencing
Study Abstract
  
SRA Study Id SRP082851
Study Title [Clostridium] aminophilum strain:F Genome sequencing
Study Abstract
  
SRA Study Id SRP087865
Study Title Lachnospiraceae bacterium NLAE-zl-G231 Genome sequencing
Study Abstract
  
SRA Study Id SRP084599
Study Title Ruminococcaceae bacterium YRB3002 Genome sequencing
Study Abstract
  
SRA Study Id SRP085207
Study Title Bacillus cereus KPR-7A genome sequencing
Study Abstract
  
SRA Study Id SRP085206
Study Title Prevotella sp. KH1P2 genome sequencing
Study Abstract
  
SRA Study Id SRP082854
Study Title Bacteroides sp. AR20 Genome sequencing
Study Abstract
  
SRA Study Id SRP087868
Study Title Streptococcus sp. NLAE-zl-C503 Genome sequencing
Study Abstract
  
SRA Study Id SRP085208
Study Title Olsenella sp. kh2p3 Genome sequencing
Study Abstract
  
SRA Study Id SRP087869
Study Title Clostridium innocuum NLAE-zl-C381 genome sequencing
Study Abstract
  
SRA Study Id SRP082855
Study Title Lachnobacterium bovis strain:S1b Genome sequencing
Study Abstract
  
SRA Study Id SRP103998
Study Title Clostridiales bacterium strain:R-7 Genome sequencing
Study Abstract
  
SRA Study Id SRP103999
Study Title Prevotellaceae bacterium MN60 Genome sequencing
Study Abstract
  
SRA Study Id SRP087862
Study Title Actinomyces ruminicola DSM 27982 genome sequencing
Study Abstract
  
SRA Study Id SRP103993
Study Title Lachnospiraceae bacterium strain:LC2019 Genome sequencing
Study Abstract
  
SRA Study Id SRP087863
Study Title Proteus mirabilis NLAE-zl-C285 genome sequencing
Study Abstract
  
SRA Study Id SRP085201
Study Title Sharpea azabuensis KH2P10 genome sequencing
Study Abstract
  
SRA Study Id SRP087860
Study Title Porphyromonadaceae bacterium KHP3R9 Genome sequencing
Study Abstract
  
SRA Study Id SRP103995
Study Title Ruminococcaceae bacterium R-25 Genome sequencing
Study Abstract
  
SRA Study Id SRP087861
Study Title Bacteroidales bacterium KHT7 Genome sequencing
Study Abstract
  
SRA Study Id SRP085200
Study Title Enterococcus faecalis VTM1R91 genome sequencing
Study Abstract
  
SRA Study Id SRP103996
Study Title Bacteroidales bacterium WCE2004 Genome sequencing
Study Abstract
  
SRA Study Id SRP103990
Study Title Ruaniaceae bacterium KH17 Genome sequencing
Study Abstract
  
SRA Study Id SRP103991
Study Title Prevotellaceae bacterium KH2P17 Genome sequencing
Study Abstract
  
SRA Study Id SRP103992
Study Title Bacteroidales bacterium WCE2008 Genome sequencing
Study Abstract
  
SRA Study Id SRP078118
Study Title Staphylococcus epidermidis AG42 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP078119
Study Title Peptostreptococcaceae bacterium VA2 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP082845
Study Title Ruminococcus flavefaciens strain:YRD2003 Genome sequencing
Study Abstract
  
SRA Study Id SRP082846
Study Title Butyrivibrio sp. INlla21 Genome sequencing
Study Abstract
  
SRA Study Id SRP082847
Study Title Lachnospiraceae bacterium XPB1003 Genome sequencing
Study Abstract
  
SRA Study Id SRP078116
Study Title Streptococcus equinus strain:AG46 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP082848
Study Title Butyrivibrio sp. INlla16 Genome sequencing
Study Abstract
  
SRA Study Id SRP078117
Study Title Ruminococcus albus AD2013 Genome sequencing
Study Abstract
  
SRA Study Id SRP078110
Study Title Lactobacillus brevis AG48 Genome sequencing
Study Abstract
  
SRA Study Id SRP082849
Study Title Ruminococcus flavefaciens strain:YAD2003 Genome sequencing
Study Abstract
  
SRA Study Id SRP087834
Study Title Methanobrevibacter gottschalkii DSM 11978 genome sequencing
Study Abstract
  
SRA Study Id SRP087837
Study Title Lachnospira multipara D15d genome sequencing
Study Abstract
  
SRA Study Id SRP087838
Study Title Selenomonas ruminantium WCT3 genome sequencing
Study Abstract
  
SRA Study Id SRP087835
Study Title Propionibacterium acnes NLAE-zl-G260 genome sequencing
Study Abstract
  
SRA Study Id SRP087836
Study Title Shigella sonnei NLAE-zl-G496 genome sequencing
Study Abstract
  
SRA Study Id SRP087844
Study Title Kandleria vitulina WCC7 genome sequencing
Study Abstract
  
SRA Study Id SRP087845
Study Title Prevotella ruminicola KHT3 genome sequencing
Study Abstract
  
SRA Study Id SRP087842
Study Title Acidaminococcus fermentens WCC6 genome sequencing
Study Abstract
  
SRA Study Id SRP087843
Study Title Lachnospiraceae bacterium KH1T2 Genome sequencing
Study Abstract
  
SRA Study Id SRP087848
Study Title Lactobacillus ruminis WC1T17 genome sequencing
Study Abstract
  
SRA Study Id SRP087849
Study Title Eubacterium pyruvativorans KHPC4 genome sequencing
Study Abstract
  
SRA Study Id SRP082832
Study Title Eubacterium oxidoreducens strain:DSM 3217 Genome sequencing
Study Abstract
  
SRA Study Id SRP087847
Study Title Selenomonas ruminantium KH1T6 genome sequencing
Study Abstract
  
SRA Study Id SRP087841
Study Title Oribacterium sp. WCC10 Genome sequencing
Study Abstract
  
SRA Study Id SRP087839
Study Title Cellulomonas sp. KH9 Genome sequencing
Study Abstract
  
SRA Study Id SRP082827
Study Title Ruminococcaceae bacterium FB2012 Genome sequencing
Study Abstract
  
SRA Study Id SRP082828
Study Title Prevotellaceae bacterium HUN156 Genome sequencing
Study Abstract
  
SRA Study Id SRP082881
Study Title Pseudobutyrivibrio xylanivorans strain:DSM 10317 Genome sequencing
Study Abstract
  
SRA Study Id SRP087899
Study Title Lachnoclostridium oroticum NLAE-zl-C242 genome sequencing
Study Abstract
  
SRA Study Id SRP082882
Study Title Butyrivibrio sp. Su6 Genome sequencing
Study Abstract
  
SRA Study Id SRP082883
Study Title Ruminococcus flavefaciens strain:SAb67 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP087897
Study Title Enterococcus casseliflavus NLAE-zl-C414 genome sequencing
Study Abstract
  
SRA Study Id SRP082884
Study Title Ruminococcus flavefaciens strain:YL228 Genome sequencing
Study Abstract
  
SRA Study Id SRP087898
Study Title Lachnoclostridium clostridioforme NLAE-zl-C196 genome sequencing
Study Abstract
  
SRA Study Id SRP082885
Study Title Butyrivibrio sp. TB strain:TB Genome sequencing
Study Abstract
  
SRA Study Id SRP082886
Study Title Methanobrevibacter millerae strain:DSM 16643 Genome sequencing
Study Abstract
  
SRA Study Id SRP082887
Study Title Methanosarcina sp. DSM 11855 Genome sequencing
Study Abstract
  
SRA Study Id SRP082888
Study Title Methanobrevibacter olleyae strain:DSM 16632 Genome sequencing
Study Abstract
  
SRA Study Id SRP087892
Study Title Porphyromonadaceae bacterium NLAE-zl-C104 Genome sequencing
Study Abstract
  
SRA Study Id SRP085471
Study Title Butyrivibrio sp. OB235 genome sequencing
Study Abstract
  
SRA Study Id SRP087895
Study Title Lactococcus garvieae M79 genome sequencing
Study Abstract
  
SRA Study Id SRP087896
Study Title Bacteroides ovatus NLAE-zl-C57 genome sequencing
Study Abstract
  
SRA Study Id SRP087893
Study Title Lachnoclostridium contortum NLAE-zl-C134 genome sequencing
Study Abstract
  
SRA Study Id SRP085475
Study Title Olsenella umbonata DSM 22619 genome sequencing
Study Abstract
  
SRA Study Id SRP082880
Study Title Streptococcus equinus JB1 Genome sequencing
Study Abstract
  
SRA Study Id SRP087894
Study Title Bifidobacterium breve RP2 genome sequencing
Study Abstract
  
SRA Study Id SRP082878
Study Title Pseudobutyrivibrio ruminis DSM 9787 Genome sequencing
Study Abstract
  
SRA Study Id SRP082879
Study Title Lachnospiraceae bacterium G11 Genome sequencing
Study Abstract
  
SRA Study Id SRP086339
Study Title Selenomonas ruminantium Z108 genome sequencing
Study Abstract
  
SRA Study Id SRP086332
Study Title Prevotella sp. NE3005 genome sequencing
Study Abstract
  
SRA Study Id SRP047991
Study Title Butyrivibrio proteoclasticus FD2007 Genome sequencing
Study Abstract
  
SRA Study Id SRP086331
Study Title Prevotella bryantii FB3001 genome sequencing
Study Abstract
  
SRA Study Id SRP086334
Study Title Eubacterium pyruvativorans i6 genome sequencing
Study Abstract
  
SRA Study Id SRP086333
Study Title Eubacterium ruminantium FB3002 genome sequencing
Study Abstract
  
SRA Study Id SRP047994
Study Title Prevotella sp. MA2016 Genome sequencing
Study Abstract
  
SRA Study Id SRP047995
Study Title Lachnospiraceae bacterium MA2020 Genome sequencing
Study Abstract
  
SRA Study Id SRP047992
Study Title [Eubacterium] cellulosolvens LD2006 Genome sequencing
Study Abstract
  
SRA Study Id SRP047993
Study Title Prevotella sp. FD3004 Genome sequencing
Study Abstract
  
SRA Study Id SRP087877
Study Title Lachnospiraceae bacterium KHCPX20 Genome sequencing
Study Abstract
  
SRA Study Id SRP087878
Study Title Ruminococcaceae bacterium KH2T8 Genome sequencing
Study Abstract
  
SRA Study Id SRP082860
Study Title Ruminococcaceae bacterium D5 strain:D5 Genome sequencing
Study Abstract
  
SRA Study Id SRP082861
Study Title Megasphaera elsdenii strain:YE34 Genome sequencing
Study Abstract
  
SRA Study Id SRP087875
Study Title Lactobacillus mucosae KHPX11 genome sequencing
Study Abstract
  
SRA Study Id SRP087876
Study Title Kandleria vitulina KH4T7 genome sequencing
Study Abstract
  
SRA Study Id SRP082862
Study Title Lachnospiraceae bacterium C10 Genome sequencing
Study Abstract
  
SRA Study Id SRP082863
Study Title Enterococcus mundtii C2 genome sequencing
Study Abstract
  
SRA Study Id SRP082864
Study Title Lachnospiraceae bacterium c7 strain:c7 Genome sequencing
Study Abstract
  
SRA Study Id SRP087879
Study Title Actinomyces denticolens PA genome sequencing
Study Abstract
  
SRA Study Id SRP082865
Study Title Selenomonas ruminantium strain:C3 Genome sequencing
Study Abstract
  
SRA Study Id SRP092669
Study Title [Clostridium] clostridioforme strain:ATCC 25537 Genome sequencing
Study Abstract
  
SRA Study Id SRP082866
Study Title Ruminococcus albus strain:AR67 Genome sequencing
Study Abstract
  
SRA Study Id SRP073904
Study Title Erysipelotrichaceae bacterium NK3D112 Genome sequencing
Study Abstract
  
SRA Study Id SRP086660
Study Title Prevotella ruminicola BPI-162 genome sequencing
Study Abstract
  
SRA Study Id SRP087870
Study Title Lachnoclostridium clostridioforme NLAE-zl-G208 genome sequencing
Study Abstract
  
SRA Study Id SRP073905
Study Title Pseudobutyrivibrio sp. LB2011 Genome sequencing
Study Abstract
  
SRA Study Id SRP073908
Study Title Oribacterium sp. FC2011 Genome sequencing
Study Abstract
  
SRA Study Id SRP087873
Study Title Porphyromonadaceae bacterium KH3R12 Genome sequencing
Study Abstract
  
SRA Study Id SRP086663
Study Title Lachnoclostridium lavalense NLAE-zl-G277 genome sequencing
Study Abstract
  
SRA Study Id SRP087874
Study Title Ruminococcus albus KH2T6 genome sequencing
Study Abstract
  
SRA Study Id SRP047782
Study Title Bifidobacterium merycicum DSM 6492 Genome sequencing
Study Abstract
  
SRA Study Id SRP086661
Study Title Bacteroides vulgatus NLAE-zl-G202 genome sequencing
Study Abstract
  
SRA Study Id SRP087871
Study Title Acetitomaculum ruminis DSM 5522 genome sequencing
Study Abstract
  
SRA Study Id SRP047780
Study Title Propionibacterium sp. MB3007 Genome sequencing
Study Abstract
  
SRA Study Id SRP086662
Study Title Enterococcus casseliflavus NLAE-zl-G268 genome sequencing
Study Abstract
  
SRA Study Id SRP087872
Study Title Porphyromonadaceae bacterium KH3CP3RA Genome sequencing
Study Abstract
  
SRA Study Id SRP047783
Study Title Methanomicrobium mobile BP strain:BP Genome sequencing
Study Abstract
  
SRA Study Id SRP078129
Study Title Lachnospiraceae bacterium AC2031 Genome sequencing
Study Abstract
  
SRA Study Id SRP073911
Study Title Butyrivibrio sp. LB2008 Genome sequencing
Study Abstract
  
SRA Study Id SRP073912
Study Title Butyrivibrio sp. MC2021 Genome sequencing
Study Abstract
  
SRA Study Id SRP073910
Study Title Anaerovibrio lipolyticus LB2005 Genome sequencing
Study Abstract
  
SRA Study Id SRP078125
Study Title Clostridium algidicarnis strain:B3 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP082856
Study Title Blautia sp. SF-50 Genome sequencing
Study Abstract
  
SRA Study Id SRP082857
Study Title Pseudobutyrivibrio sp. YE44 Genome sequencing
Study Abstract
  
SRA Study Id SRP082858
Study Title Pseudobutyrivibrio sp. C4 strain:C4 Genome sequencing
Study Abstract
  
SRA Study Id SRP078128
Study Title Prevotella sp. HUN102 Genome sequencing
Study Abstract
  
SRA Study Id SRP082859
Study Title Allisonella histaminiformans strain:DSM 15230 Genome sequencing
Study Abstract
  
SRA Study Id SRP078121
Study Title Clostridioides mangenotii LM2 Genome sequencing
Study Abstract
  
SRA Study Id SRP078122
Study Title Selenomonas ruminantium AC2024 Genome sequencing
Study Abstract
  
SRA Study Id SRP078123
Study Title Selenomonas ruminantium AB3002 Genome sequencing
Study Abstract
  
SRA Study Id SRP092671
Study Title Fibrobacter succinogenes subsp. elongatus strain:HM2 Genome sequencing and assembly
Study Abstract
  
SRA Study Id SRP082870
Study Title Peptostreptococcus sp. D1 strain:D1 Genome sequencing
Study Abstract
  
SRA Study Id SRP085467
Study Title Pseudobutyrivibrio sp. nor37 Genome sequencing
Study Abstract
  
SRA Study Id SRP082871
Study Title Ruminococcus sp. YE78 Genome sequencing
Study Abstract
  
SRA Study Id SRP078130
Study Title Ruminococcaceae bacterium AE2021 Genome sequencing
Study Abstract
  
SRA Study Id SRP078131
Study Title Lachnospiraceae bacterium AC2012 Genome sequencing
Study Abstract
  
SRA Study Id SRP082873
Study Title Lachnospiraceae bacterium G41 genome sequencing
Study Abstract
  
SRA Study Id SRP085468
Study Title Actinomyces ruminicola KPR-7B genome sequencing
Study Abstract
  
SRA Study Id SRP082874
Study Title Lachnospiraceae bacterium RM5 Genome sequencing
Study Abstract
  
SRA Study Id SRP082875
Study Title Kandleria vitulina S3b genome sequencing
Study Abstract
  
SRA Study Id SRP082876
Study Title Ruminococcaceae bacterium P7 strain:P7 Genome sequencing
Study Abstract
  
SRA Study Id SRP082877
Study Title Lactobacillus ruminis DSM 20403 = NBRC 102161 Genome sequencing
Study Abstract
  
SRA Study Id SRP073915
Study Title Bacillus sp. MB2021 Genome sequencing
Study Abstract
  
SRA Study Id SRP087880
Study Title Peptostreptococcus russellii Calf135 genome sequencing
Study Abstract
  
SRA Study Id SRP087881
Study Title Bifidobacterium bifidum Calf96 genome sequencing
Study Abstract
  
SRA Study Id SRP104824
Study Title Rumen microbial communities from New Zealand - Rumen Methanol Enrichment MEC1 Co-Culture metagenome
Study Abstract
  
SRA Study Id SRP087882
Study Title Olsenella umbonata WCP15 genome sequencing
Study Abstract
  
SRA Study Id SRP073917
Study Title Lachnospiraceae bacterium MC2017 Genome sequencing
Study Abstract
  
SRA Study Id SRP087883
Study Title Succiniclasticum ruminis DSM 9236 genome sequencing
Study Abstract
  
SRA Study Id SRP082867
Study Title Bacteroides sp. AR29 Genome sequencing
Study Abstract
  
SRA Study Id SRP082868
Study Title Ruminococcus sp. YE71 Genome sequencing
Study Abstract
  
SRA Study Id SRP078137
Study Title Eubacterium sp. AB3007 Genome sequencing
Study Abstract
  
SRA Study Id SRP092667
Study Title Peptostreptococcus anaerobius strain:C Genome sequencing
Study Abstract
  
SRA Study Id SRP082869
Study Title Ruminococcus bromii strain:YE282 Genome sequencing
Study Abstract
  
SRA Study Id SRP092664
Study Title Pseudobutyrivibrio sp. AR14 Genome sequencing
Study Abstract
  
SRA Study Id SRP092665
Study Title Eubacterium ruminantium strain:HUN269 Genome sequencing
Study Abstract
  
Legacy ER Study ID
Legacy GOLD ID
Added By JGI automated process on 2012-09-25
Last Modified By Supratim Mukherjee on 2016-08-16
PI William Kelly
Description The Hungate 1000. A catalogue of reference genomes from the rumen microbiome.
Relevance 1000 Genomes
Study Information Link
Study Information Visibility Public
Metagenomic Study Yes
Publication
Is GEBA No
Is HMP No
ECOSYSTEM CLASSIFICATION
Ecosystem Host-associated
Ecosystem Category Mammals
Ecosystem Type Digestive system
Ecosystem Subtype Foregut
Specific Ecosystem Rumen
STUDY COMPOSITION
Number of Biosamples 1
Number of Organisms 418
Number of Seq Projects 419
Number of Analysis Projects 422
Number of Related Studies 0

 

 

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