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Study

Study Name: Sedimentibacter sp. B4

Projects

Biosamples

Organisms

Biosamples: 0 Seq. Projects: 2
STUDY INFORMATION
GOLD Study ID Gs0032285
Study Name Sedimentibacter sp. B4
Other Names
NCBI Umbrella Bioproject Name
NCBI Umbrella Bioproject ID
Legacy ER Study ID
Legacy GOLD ID
Added By JGI automated process on 2013-02-26
Last Modified By
PI
Description Dehalobacter sp. E1 grows in strict coculture with Sedimentibacter sp. B4. The metagenome of the coculture and genome of strain B4 were sequenced. Filtering of the Dehalobacter genome sequence data from the metagenomic sequence of the coculture was done based on BLAST hits and G+C content. The Sedimentibacter genome sequence was used to query the metagenomic coculture sequence. Contigs of more than 150 bp in length, with at least 2 reads, and having no hit with the Sedimentibacter contigs of more than 90% identity for at least 100 bp were binned as Dehalobacter.
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Study Information Link
Study Information Visibility Public
Metagenomic Study No
Publication
Is GEBA No
Is HMP No
ECOSYSTEM CLASSIFICATION
Ecosystem
Ecosystem Category
Ecosystem Type
Ecosystem Subtype
Specific Ecosystem
STUDY COMPOSITION
Number of Biosamples 0
Number of Organisms 2
Number of Seq Projects 2
Number of Analysis Projects 2
Number of Related Studies 0

 

 

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