PROJECT INFORMATION
GOLD Project ID
Gp0323312  
Project Name
Quercus suber HL8  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Quercus suber HL8 genome sequencing
NCBI BioProject ID 392919
NCBI BioProject Accession PRJNA392919
NCBI Locus Tag
  
NCBI BioSample Accession SAMN07312269
PI
Added By JGI automated process on 2018-07-12
Last Modified By
Project Comments
  
Project Status
incomplete  
Project Relevance Industrial
Sequencing Center Centro de Biotecnologia Agrícola e Agro-alimentar do Alentejo (CEBAL) (Portugal)
Collaborating Institute
  
Funding Agency
  
Project Description
Quercus suber HL8 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX2998823
Experiment Title WGS of Q. suber: genome survey using 500bp inserts
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name GS_PE500
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
 
SRA Experiment Id SRX2998822
Experiment Title WGS of Q. suber: genome survey using 170bp inserts
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name GS_PE170
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
 
SRA Experiment Id SRX2998821
Experiment Title WGS of Q. suber:complex genome using 500bp inserts
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name HL8.5_CG_PE500
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
 
SRA Experiment Id SRX2998817
Experiment Title WGS of Q. suber:mate pair using 5000bp inserts
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name SOB15_CG_MP5000
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
 
SRA Experiment Id SRX2998816
Experiment Title WGS of Q. suber:mate pair using 2000bp inserts
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name HL8.10_CG_MP2000
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
 
SRA Experiment Id SRX2998815
Experiment Title WGS of Q. suber:mate pair using 20Kbp inserts
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name SOB36_CG_MP20000
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_4000
 
SRA Experiment Id SRX2998814
Experiment Title WGS of Q. suber:mate pair using 10Kbp inserts
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name SOB37_CG_MP10000
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_4000
 
SRA Experiment Id SRX2998819
Experiment Title WGS of Q. suber:complex genome using 300bp inserts
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Sob34_CG_PE300
Library Layout PAIRED
Library Instrument HI_SEQ_X_TEN
 
SRA Experiment Id SRX2998818
Experiment Title WGS of Q. suber:complex genome using 800bp inserts
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name HL8.7_CG_PE800
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
 
SRA Experiment Id SRX2998820
Experiment Title WGS of Q. suber:complex genome using 170bp inserts
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name HL8.2_CG_PE170
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
PROJECT COMPOSITION
Study Quercus suber HL8 genome sequencing
Organism Quercus suber HL8
Analysis Projects
  
Number of Analysis Projects 0
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status In progress
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0454986
Organism Name
Quercus suber HL8  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
PLANTS-STREPTOPHYTA  
Genus
Quercus  
Genus Synonyms
  
Species
Quercus suber  
Subspecies
  
Species Synonyms
  
Strain
  
Strain Synonyms
  
Serovar/Cultivar
HL8  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 58331
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
Viridiplantae  
NCBI Phylum
Streptophyta  
NCBI Class
  
NCBI Order
Fagales  
NCBI Family
Fagaceae  
NCBI Genus
Quercus  
NCBI Species
Quercus suber  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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