PROJECT INFORMATION
GOLD Project ID
Gp0307839  
Project Name
Shigella sonnei ATCC 29930  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Genome Sequences of Shiga Toxin-Producing Escherichia coli Isolates
NCBI BioProject Accession PRJNA218110
NCBI Locus Tag
C1P89  
NCBI BioSample Accession SAMN08330284
Source Sample ID
PI Unknown
Added By JGI automated process on 2018-04-26
Last Modified By JGI automated process on 2018-04-30
Project Comments
  
Project Status
Complete and Published  
Project Relevance
  
Sequencing Center Centers for Disease Control and Prevention (CDC), USA (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Shigella sonnei ATCC 29930 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications Genome announcements: High-Quality Whole-Genome Sequences for 59 Historical Shigella Strains Generated with PacBio Sequencing.
PubMed: 29650580 DOI: e00282-18
Other Publications Genome announcements: High-Quality Genome Sequence of an O157 Strain Carrying an Resistance Gene Isolated from a Patient in the United States.
PubMed: 28302788 DOI: e01725-16
Genome announcements: High-Quality Draft Genome Sequences for Five Non-O157 Shiga Toxin-Producing Escherichia coli Strains Generated with PacBio Sequencing and Optical Maps.
PubMed: 27365352 DOI: 10.1128/genomeA.00626-16
Show more publications...

Genome announcements: High-Quality Complete and Draft Genome Sequences for Three spp. and Three spp. Generated with Pacific Biosciences and Illumina Sequencing and Optical Mapping.
PubMed: 29301876 DOI: e01384-17
Genome announcements: High-Quality Whole-Genome Sequences for 21 Enterotoxigenic Strains Generated with PacBio Sequencing.
PubMed: 29326203 DOI: e01311-17
Genome announcements: High-Quality Draft Genome Sequences for Four Drug-Resistant or Outbreak-Associated Strains Generated with PacBio Sequencing and Whole-Genome Maps.
PubMed: 28860257 DOI: e00906-17
Genome announcements: High-Quality Whole-Genome Sequences for 77 Shiga Toxin-Producing Escherichia coli Strains Generated with PacBio Sequencing.
PubMed: 29748405 DOI: 10.1128/genomeA.00391-18
Genome announcements: Complete Genome Sequences of Two Shiga Toxin-Producing Escherichia coli Strains from Serotypes O119:H4 and O165:H25.
PubMed: 26679598 DOI: 10.1128/genomeA.01496-15
Ignored Publications
  
Unassigned Publications Genome announcements: Draft Whole-Genome Sequences of Nine Non-O157 Shiga Toxin-Producing Escherichia coli Strains.
PubMed: 25013133 DOI: 10.1128/genomeA.00501-14
Genome announcements: Genome Sequences of 228 Shiga Toxin-Producing Escherichia coli Isolates and 12 Isolates Representing Other Diarrheagenic E. coli Pathotypes.
PubMed: 25103754 DOI: 10.1128/genomeA.00718-14
Show more publications...

Genome announcements: Draft Whole-Genome Sequences of 10 Enterotoxigenic Escherichia coli Serogroup O6 Strains.
PubMed: 26044422 DOI: 10.1128/genomeA.00564-15
SRA Experiment
  
PROJECT COMPOSITION
Study Genome Sequences of Shiga Toxin-Producing Escherichia coli Isolates
Organism Shigella sonnei ATCC 29930
Analysis Projects Shigella sonnei ATCC 29930
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) PacBio RS
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0032759
Organism Name
Shigella sonnei ATCC 29930  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Shigella  
Genus Synonyms
  
Species
Shigella sonnei  
Subspecies
  
Species Synonyms
  
Strain
ATCC 29930  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
ATCC 29930  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.3333  
Exemplar Name
Shigella sonnei  
Taxon DOI
10.1601/tx.3333  
Biosafety Level
2  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 624
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Pseudomonadota  
NCBI Class
Gammaproteobacteria  
NCBI Order
Enterobacterales  
NCBI Family
Enterobacteriaceae  
NCBI Genus
Shigella  
NCBI Species
Shigella sonnei  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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