PROJECT INFORMATION
GOLD Project ID
Gp0236116  
Project Name
Quercus lobata SW786  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Quercus lobata SW786 Genome Sequencing
NCBI BioProject Accession PRJNA308314
NCBI Locus Tag
  
NCBI BioSample Accession SAMN04359389
PI
Added By JGI automated process on 2017-08-31
Last Modified By JGI automated process on 2017-09-01
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Evolution
Sequencing Center University of Maryland Center for Environmental Science
Collaborating Institute
  
Funding Agency
  
Project Description
Quercus lobata SW786 Genome Sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX1644617  (Link to NCBI )
Experiment Title WGS of Quercus lobata: 5500 bp inserts
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name QMP_4
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
 
SRA Experiment Id SRX1644618  (Link to NCBI )
Experiment Title WGS of Quercus lobata: 6700 bp inserts
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name QMP_5
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
 
SRA Experiment Id SRX1644615  (Link to NCBI )
Experiment Title WGS of Quercus lobata: 3700 bp inserts
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name QMP_2
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
 
SRA Experiment Id SRX1644616  (Link to NCBI )
Experiment Title WGS of Quercus lobata: 4500 bp inserts
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name QMP_3
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
 
SRA Experiment Id SRX1644613  (Link to NCBI )
Experiment Title WGS of Quercus lobata: 12000 bp inserts
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name QMP_9
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
 
SRA Experiment Id SRX1644614  (Link to NCBI )
Experiment Title WGS of Quercus lobata: 2900 bp inserts
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name QMP_1
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
 
SRA Experiment Id SRX1644611  (Link to NCBI )
Experiment Title WGS of Quercus lobata: 500 bp inserts
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Qlob_2
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
 
SRA Experiment Id SRX1644612  (Link to NCBI )
Experiment Title WGA of Quercus lobata: PCR-free, 550-bp inserts
Exp Library Strategy WGA
Library Source GENOMIC
Library Selection RANDOM
Library Name Qlob_7
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
 
SRA Experiment Id SRX1644620  (Link to NCBI )
Experiment Title WGS of Quercus lobata: 9100 bp inserts
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name QMP_7
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
 
SRA Experiment Id SRX1644621  (Link to NCBI )
Experiment Title WGS of Quercus lobata: 9800 bp inserts
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name QMP_8
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
 
SRA Experiment Id SRX1644619  (Link to NCBI )
Experiment Title WGS of Quercus lobata: 7800 bp inserts
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name QMP_6
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
PROJECT COMPOSITION
Study Quercus lobata SW786 Genome sequencing and assembly
Organism Quercus lobata SW786
Analysis Projects Quercus lobata SW786
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Draft
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0384946
Organism Name
Quercus lobata SW786  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
PLANTS-STREPTOPHYTA  
Genus
Quercus  
Genus Synonyms
  
Species
Quercus lobata  
Subspecies
  
Species Synonyms
  
Strain
  
Strain Synonyms
  
Serovar/Cultivar
SW786  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 97700
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
Viridiplantae  
NCBI Phylum
Streptophyta  
NCBI Class
Magnoliopsida  
NCBI Order
Fagales  
NCBI Family
Fagaceae  
NCBI Genus
Quercus  
NCBI Species
Quercus lobata  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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