PROJECT INFORMATION
GOLD Project ID
Gp0220004  
Project Name
Symbiodinium microadriaticum CCMP2467  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Symbiodinium microadriaticum CCMP2467 genome sequencing
NCBI BioProject ID 292355
NCBI BioProject Accession PRJNA292355
NCBI Locus Tag
  
NCBI BioSample Accession SAMN03975613
PI
Added By JGI automated process on 2017-06-28
Last Modified By JGI automated process on 2017-06-29
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Environmental
Sequencing Center King Abdulaziz City for Science and Technology (KACST) (Saudi Arabia)
Collaborating Institute
  
Funding Agency
  
Project Description
Symbiodinium microadriaticum CCMP2467 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX1438243  (Link to NCBI )
Experiment Title S. microadriaticum MP07 - 10000bp
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name MP07
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 202
 
SRA Experiment Id SRX1438244  (Link to NCBI )
Experiment Title S. microadriaticum FM01 - 40000bp
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name FM01
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 180
 
SRA Experiment Id SRX1438245  (Link to NCBI )
Experiment Title S. microadriaticum PE02
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PE04
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 202
 
SRA Experiment Id SRX1438246  (Link to NCBI )
Experiment Title S. microadriaticum PE05
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PE05
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 111
 
SRA Experiment Id SRX1438236  (Link to NCBI )
Experiment Title S. microadriaticum MP02 - 3000bp
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name MP02
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 202
 
SRA Experiment Id SRX1438247  (Link to NCBI )
Experiment Title S. microadriaticum PE07
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PE07
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 202
 
SRA Experiment Id SRX1438249  (Link to NCBI )
Experiment Title S. microadriaticum PE09
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PE09
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 202
 
SRA Experiment Id SRX1438238  (Link to NCBI )
Experiment Title S. microadriaticum MP03 - 3000bp
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name MP03
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 202
 
SRA Experiment Id SRX1438250  (Link to NCBI )
Experiment Title S. microadriaticum PE10
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PE10
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 202
 
SRA Experiment Id SRX1438251  (Link to NCBI )
Experiment Title S. microadriaticum PE13
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PE13
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 202
 
SRA Experiment Id SRX1438240  (Link to NCBI )
Experiment Title S. microadriaticum MP04 - 6000bp
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name MP04
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 202
 
SRA Experiment Id SRX1438241  (Link to NCBI )
Experiment Title S. microadriaticum MP05 - 7000bp
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name MP05
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 202
 
SRA Experiment Id SRX1438252  (Link to NCBI )
Experiment Title S. microadriaticum PE14
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PE14
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 202
 
SRA Experiment Id SRX1438253  (Link to NCBI )
Experiment Title S. microadriaticum PE15
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PE15
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 202
 
SRA Experiment Id SRX1438242  (Link to NCBI )
Experiment Title S. microadriaticum MP06 - 9000bp
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name MP06
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 202
PROJECT COMPOSITION
Study Symbiodinium microadriaticum CCMP2467 genome sequencing
Organism Symbiodinium microadriaticum CCMP2467
Analysis Projects Symbiodinium microadriaticum CCMP2467
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Draft
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0373200
Organism Name
Symbiodinium microadriaticum CCMP2467  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
PROTISTS-ALVEOLATA  
Genus
Symbiodinium  
Genus Synonyms
  
Species
Symbiodinium microadriaticum  
Subspecies
  
Species Synonyms
  
Strain
CCMP2467  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
CCMP2467  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 2951
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
  
NCBI Phylum
  
NCBI Class
Dinophyceae  
NCBI Order
Suessiales  
NCBI Family
Symbiodiniaceae  
NCBI Genus
Symbiodinium  
NCBI Species
Symbiodinium microadriaticum  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Oceanic  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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