PROJECT INFORMATION
GOLD Project ID
Gp0208316  
Project Name
Zoogloea schifflangensis LCSB751  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Systems Biology of Lipid Accumulating Organisms
NCBI BioProject Accession PRJNA230567
NCBI Locus Tag
MWUM00000000  
NCBI BioSample Accession SAMN06480675
PI Shaman Narayanasamy
Added By Shaman Narayanasamy on 2017-03-09
Last Modified By Hema Katta on 2019-01-08
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center TGen (USA)
Collaborating Institute University of Luxembourg
Funding Agency
  
Project Description
Genomes of lipid accumulating bacterial populations derived from foaming sludge islets within the anoxic tank of a biological wastewater treatment plant  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
Genome Publications Standards in genomic sciences First draft genome sequence of a strain belonging to the genus and its gene expression in situ.

Other Publications
  
Ignored Publications
  
Unassigned Publications Nat Microbiol 6(1):123-135 Roles of bacteriophages, plasmids and CRISPR immunity in microbial community dynamics revealed using time-series integrated meta-omics.

Nature communications Community-integrated omics links dominance of a microbial generalist to fine-tuned resource usage.

Show more publications...

SRA Experiment
 
SRA Experiment Id SRX2628225  (Link to NCBI )
Experiment Title WGS of Zoogloea schifflangensis LCSB751 derived from foaming sludge islets of a wastewater treatment plant anoxic tank
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name LAO-Isolate_751
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_I_IX
PROJECT COMPOSITION
Study Activated sludge microbial communities from WWTP in Schifflange, Luxembourg
Organism Zoogloea schifflangensis LCSB751
Analysis Projects Zoogloea schifflangensis LCSB751
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina GAIIx
Library Method (MIGS-28)
Illumina regular  
Library Layout
  
Library Screening Method
  
Number Of Reads
2638115 Illumina paired-end  
Read Size
151  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0367845
Organism Name
Zoogloea schifflangensis LCSB751  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-BETA  
Genus
Zoogloea  
Genus Synonyms
  
Species
Zoogloea schifflangensis  
Subspecies
  
Species Synonyms
  
Strain
LCSB751  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1965277
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Betaproteobacteria  
NCBI Order
Rhodocyclales  
NCBI Family
Zoogloeaceae  
NCBI Genus
Zoogloea  
NCBI Species
Zoogloea sp. LCSB751  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Wastewater  
Ecosystem Type
Activated Sludge  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
Rod-shaped  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Undefined
Diseases
  
Known Habitats Activated wastewater sludge
Metabolisms
  
Phenotypes Lipid accumulating
Energy Sources Undefined

 

 

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