PROJECT INFORMATION
GOLD Project ID
Gp0208020  
Project Name
Phycomyces blakesleeanus UBC1 Standard Draft  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Phycomyces blakesleeanus UBC1 Standard Draft
NCBI BioProject Accession PRJNA538196
NCBI Locus Tag
FB447  
NCBI BioSample Accession SAMN11512392
PI Joseph Spatafora
Added By JGI automated process on 2017-03-07
Last Modified By JGI automated process on 2020-09-02
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Genome sequencing of a fungus from the early diverging lineage of fungi  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX5781443  (Link to NCBI )
Experiment Title Phycomyces blakesleeanus UBC1 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BHWHO
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5781442  (Link to NCBI )
Experiment Title Phycomyces blakesleeanus UBC1 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BHWHO
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5781441  (Link to NCBI )
Experiment Title Phycomyces blakesleeanus UBC1 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BPPAS
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5781440  (Link to NCBI )
Experiment Title Phycomyces blakesleeanus UBC1 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BPPAS
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5781436  (Link to NCBI )
Experiment Title Phycomyces blakesleeanus UBC1 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BPPAS
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5781446  (Link to NCBI )
Experiment Title Phycomyces blakesleeanus UBC1 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BHWHO
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5781435  (Link to NCBI )
Experiment Title Phycomyces blakesleeanus UBC1 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name CPBBC
Library Layout SINGLE
 
SRA Experiment Id SRX5781445  (Link to NCBI )
Experiment Title Phycomyces blakesleeanus UBC1 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BHWHO
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5781434  (Link to NCBI )
Experiment Title Phycomyces blakesleeanus UBC1 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name CPBBC
Library Layout SINGLE
 
SRA Experiment Id SRX5781444  (Link to NCBI )
Experiment Title Phycomyces blakesleeanus UBC1 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name CPBBC
Library Layout SINGLE
 
SRA Experiment Id SRX5781439  (Link to NCBI )
Experiment Title Phycomyces blakesleeanus UBC1 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name CPBBC
Library Layout SINGLE
 
SRA Experiment Id SRX5781438  (Link to NCBI )
Experiment Title Phycomyces blakesleeanus UBC1 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name CPBBC
Library Layout SINGLE
 
SRA Experiment Id SRX5781437  (Link to NCBI )
Experiment Title Phycomyces blakesleeanus UBC1 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BPPAS
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
PROJECT COMPOSITION
Study Expanding fungal reference genomes with early diverging lineages (EDL) of fungi
Organism Phycomyces blakesleeanus UBC1
Analysis Projects
  
Number of Analysis Projects (AP) 0
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) PacBio Sequel
PacBio RS II
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
50  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0367719
Organism Name
Phycomyces blakesleeanus UBC1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
FUNGI-MUCOROMYCOTA  
Genus
Phycomyces  
Genus Synonyms
  
Species
Phycomyces blakesleeanus  
Subspecies
  
Species Synonyms
  
Strain
UBC1  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 4837
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
Fungi  
NCBI Phylum
Mucoromycota  
NCBI Class
Mucoromycetes  
NCBI Order
Mucorales  
NCBI Family
Phycomycetaceae  
NCBI Genus
Phycomyces  
NCBI Species
Phycomyces blakesleeanus  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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