Studies
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54,050 |
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Biosamples
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174,371 |
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Sequencing Projects
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485,175 |
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Analysis Projects
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368,782 |
| Organisms | 468,042 |
| PROJECT INFORMATION | |||||||||||||||||||||
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GOLD Project ID
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Gp0145660
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Project Name
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Leisingera aquaemixtae CECT 8399
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Other Names
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Legacy GOLD ID
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| NCBI BioProject Name | Leisingera aquaemixtae CECT 8399 | ||||||||||||||||||||
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NCBI BioProject Accession
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PRJEB10724 |
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NCBI Locus Tag
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PHA8399
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NCBI BioSample Accession
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SAMEA3539551 |
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| PI | |||||||||||||||||||||
| Added By |
JGI automated process
on 2016-05-18 |
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| Last Modified By |
Supratim Mukherjee
on 2017-03-29 |
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| Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Sequencing Center
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Spanish Type Culture Collection (CECT)
(Spain)
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Collaborating Institute
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Funding Agency
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Project Description
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Leisingera aquaemixtae is a member of the family Rhodobacteraceae reclassified in 2014 by Breider et al. as a comb. nov. of Phaeobacter aquaemixtae described in 2014 by Park et al. Genome sequencing of Leisingera aquaemixtae CECT 8399 was done using the Illumina MiSeq system by the Central Service of Support to Experimental Research (SCSIE) of the University of Valencia (Spain).
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| Is JGI Project |
No
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Project Information Visibility
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Public | ||||||||||||||||||||
| PROJECT TYPE | |||||||||||||||||||||
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Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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JGI Data Utilization Status
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JGI Award DOI
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Genome Publications
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Genom Data
Draft genome of Leisingera aquaemixtae CECT 8399(T), a member of the Roseobacter clade isolated from a junction of fresh and ocean water in Jeju Island, South Korea.
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Other Publications
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Ignored Publications
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Unassigned Publications
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International Journal of Systematic and Evolutionary Microbiology
64(Pt 4):1378-83
Phaeobacter aquaemixtae sp. nov., isolated from the junction between the ocean and a freshwater spring.
Frontiers in microbiology Genome-scale data suggest reclassifications in the Leisingera-Phaeobacter cluster including proposals for Sedimentitalea gen. nov. and Pseudophaeobacter gen. nov. |
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| SRA Experiment |
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| PROJECT COMPOSITION | |||||||||||||||||||||
| Study |
Whole genome sequencing of Leisingera aquaemixtae CECT 8399, type strain |
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| Organism |
Leisingera aquaemixtae CECT 8399 |
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| Analysis Projects |
Leisingera aquaemixtae CECT 8399 |
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| Number of Analysis Projects (AP) |
1 |
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| Number of Derived Analyis Projects (DAP) |
0
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| SEQUENCING INFORMATION | |
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Sequencing Status
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Complete |
| Sequencing Quality (MIGS-31) |
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Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0140540 |
| Organism Name |
Leisingera aquaemixtae CECT 8399
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| Other names (alias, synonyms, short names, common names) |
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| Organism Domain |
BACTERIAL
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| Phylogeny |
PROTEOBACTERIA-ALPHA
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| Genus |
Leisingera
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| Genus Synonyms |
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| Species |
Leisingera aquaemixtae
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| Subspecies |
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| Species Synonyms |
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| Strain |
CECT 8399
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| Strain Synonyms |
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| Serovar/Cultivar |
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| Culture Collection ID |
CECT 8399
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| Type Strain |
Yes
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| Exemplar DOI |
10.1601/ex.25332
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| Exemplar Name |
Leisingera aquaemixtae
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| Taxon DOI |
10.1601/tx.25972
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| Biosafety Level |
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| Organism Comments |
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| Cultured |
Yes
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| Culture Type |
Isolate
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| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
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ORGANISM TAXONOMY
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| NCBI Taxonomy ID |
1396826 |
| NCBI Superkingdom |
Bacteria
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| NCBI Kingdom |
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| NCBI Phylum |
Proteobacteria
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| NCBI Class |
Alphaproteobacteria
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| NCBI Order |
Rhodobacterales
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| NCBI Family |
Roseobacteraceae
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| NCBI Genus |
Leisingera
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| NCBI Species |
Leisingera aquaemixtae
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| ISOLATION CLASSIFICATION | |
| Ecosystem |
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
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| Oxygen Requirement |
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| Gram Staining |
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| Biotic Relationships |
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| Diseases |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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