Studies
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49,819 |
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Biosamples
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146,900 |
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Sequencing Projects
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434,145 |
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Analysis Projects
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326,448 |
| Organisms | 417,307 |
| PROJECT INFORMATION | |||||||||||||||||||||
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GOLD Project ID
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Gp0142918
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Project Name
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Ruegeria atlantica CECT 4292
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Other Names
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Legacy GOLD ID
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| NCBI BioProject Name | Whole genome sequencing of type strain of Ruegeria atlantica CECT 4292 | ||||||||||||||||||||
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NCBI BioProject ID
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301487 |
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NCBI BioProject Accession
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PRJEB10690 |
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NCBI Locus Tag
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RUA4292
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NCBI BioSample Accession
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SAMEA3528420 |
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| PI | |||||||||||||||||||||
| Added By |
JGI automated process
on 2016-05-18 |
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| Last Modified By |
Supratim Mukherjee
on 2021-03-25 |
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| Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Sequencing Center
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Spanish Type Culture Collection (CECT)
(Spain)
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Collaborating Institute
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Funding Agency
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Project Description
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Whole genome sequencing of type strain of Ruegeria atlantica CECT 4292
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| Is JGI Project |
No
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Project Information Visibility
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Public | ||||||||||||||||||||
| PROJECT TYPE | |||||||||||||||||||||
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Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |||||||||||||||||||||
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Genome Publications
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Other Publications
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International journal of systematic bacteriology
42(1):133-43
Marine star-shaped-aggregate-forming bacteria: Agrobacterium atlanticum sp. nov.; Agrobacterium meteori sp. nov.; Agrobacterium ferrugineum sp. nov., nom. rev.; Agrobacterium gelatinovorum sp. nov., nom. rev.; and Agrobacterium stellulatum sp. nov., nom. rev.
The Journal of general and applied microbiology 44(3):201-210 Reclassification of marine Agrobacterium species: Proposals of Stappia stellulata gen. nov., comb. nov., Stappia aggregata sp. nov., nom. rev., Ruegeria atlantica gen. nov., comb. nov., Ruegeria gelatinovora comb. nov., Ruegeria algicola comb. nov., and Ahrensia kieliense gen. nov., sp. nov., nom. rev. |
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| SRA Experiment |
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| PROJECT COMPOSITION | |||||||||||||||||||||
| Study |
Whole genome sequencing of type strain of Ruegeria atlantica CECT 4292 |
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| Organism |
Ruegeria atlantica CECT 4292 |
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| Analysis Projects |
Ruegeria atlantica CECT 4292 |
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| Number of Analysis Projects (AP) |
1 |
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| Number of Derived Analyis Projects (DAP) |
0
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| SEQUENCING INFORMATION | |
|---|---|
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Sequencing Status
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Complete |
| Sequencing Quality (MIGS-31) |
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Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0137887 |
| Organism Name |
Ruegeria atlantica CECT 4292
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| Other names (alias, synonyms, short names, common names) |
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| Organism Domain |
BACTERIAL
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| Phylogeny |
PROTEOBACTERIA-ALPHA
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| Genus |
Ruegeria
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| Genus Synonyms |
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| Species |
Ruegeria atlantica
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| Subspecies |
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| Species Synonyms |
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| Strain |
CECT 4292
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| Strain Synonyms |
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| Serovar/Cultivar |
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| Culture Collection ID |
DSM 5823, ATCC 700000
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| Type Strain |
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| Exemplar DOI |
10.1601/ex.1312
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| Exemplar Name |
Ruegeria atlantica
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| Taxon DOI |
10.1601/tx.1145
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| Biosafety Level |
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| Organism Comments |
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| Cultured |
Yes
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| Culture Type |
Isolate
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| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
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ORGANISM TAXONOMY
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| NCBI Taxonomy ID |
81569 |
| NCBI Superkingdom |
Bacteria
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| NCBI Kingdom |
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| NCBI Phylum |
Proteobacteria
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| NCBI Class |
Alphaproteobacteria
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| NCBI Order |
Rhodobacterales
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| NCBI Family |
Roseobacteraceae
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| NCBI Genus |
Ruegeria
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| NCBI Species |
Ruegeria atlantica
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| ISOLATION CLASSIFICATION | |
| Ecosystem |
Environmental
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| Ecosystem Category |
Aquatic
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| Ecosystem Type |
Marine
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| Ecosystem Subtype |
Sediment
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| Specific Ecosystem |
Unclassified
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
Aerobe
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| Cell Shape |
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| Motility |
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| Sporulation |
Nonsporulating
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| Temperature Range |
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
Gram-
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
Marine sediment |
| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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