PROJECT INFORMATION
GOLD Project ID
Gp0142918  
Project Name
Ruegeria atlantica CECT 4292  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Whole genome sequencing of type strain of Ruegeria atlantica CECT 4292
NCBI BioProject Accession PRJEB10690
NCBI Locus Tag
RUA4292  
NCBI BioSample Accession SAMEA3528420
PI
Added By JGI automated process on 2016-05-18
Last Modified By Supratim Mukherjee on 2021-03-25
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center Spanish Type Culture Collection (CECT) (Spain)
Collaborating Institute
  
Funding Agency
  
Project Description
Whole genome sequencing of type strain of Ruegeria atlantica CECT 4292  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications The Journal of general and applied microbiology 44(3):201-210 Reclassification of marine Agrobacterium species: Proposals of Stappia stellulata gen. nov., comb. nov., Stappia aggregata sp. nov., nom. rev., Ruegeria atlantica gen. nov., comb. nov., Ruegeria gelatinovora comb. nov., Ruegeria algicola comb. nov., and Ahrensia kieliense gen. nov., sp. nov., nom. rev.

International journal of systematic bacteriology 42(1):133-43 Marine star-shaped-aggregate-forming bacteria: Agrobacterium atlanticum sp. nov.; Agrobacterium meteori sp. nov.; Agrobacterium ferrugineum sp. nov., nom. rev.; Agrobacterium gelatinovorum sp. nov., nom. rev.; and Agrobacterium stellulatum sp. nov., nom. rev.

Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id ERX1086387  (Link to NCBI )
Experiment Title Illumina MiSeq paired end sequencing
SRA Submission ID 2014995
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name unspecified
Library Layout PAIRED
Library Instrument Illumina MiSeq
PROJECT COMPOSITION
Study Whole genome sequencing of type strain of Ruegeria atlantica CECT 4292
Organism Ruegeria atlantica CECT 4292
Analysis Projects Ruegeria atlantica CECT 4292
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0137887
Organism Name
Ruegeria atlantica CECT 4292  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Ruegeria  
Genus Synonyms
  
Species
Ruegeria atlantica  
Subspecies
  
Species Synonyms
  
Strain
CECT 4292  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 5823, ATCC 700000  
Type Strain
  
Exemplar DOI
10.1601/ex.1312  
Exemplar Name
Ruegeria atlantica  
Taxon DOI
10.1601/tx.1145  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 81569
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhodobacterales  
NCBI Family
Roseobacteraceae  
NCBI Genus
Ruegeria  
NCBI Species
Ruegeria atlantica  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Sediment  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
  
Motility
  
Sporulation
Nonsporulating  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Marine sediment
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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