PROJECT INFORMATION
GOLD Project ID
Gp0128251  
Project Name
Circinella umbellata NRRL 1351 Standard Draft  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Circinella umbellata NRRL 1351 Standard Draft
NCBI BioProject ID 331974
NCBI BioProject Accession PRJNA331974
NCBI Locus Tag
BDC45  
NCBI BioSample Accession SAMN05444945
PI Joseph Spatafora
Added By JGI automated process on 2016-01-29
Last Modified By JGI automated process on 2020-08-29
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Sequencing as part of the 1000 Fungal Genomes project  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX2926026  (Link to NCBI )
Experiment Title Circinella umbellata NRRL 1351 Fungal Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name AXCAW
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2926037  (Link to NCBI )
Experiment Title Circinella umbellata NRRL 1351 Fungal Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name AXCAW
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2926027  (Link to NCBI )
Experiment Title Circinella umbellata NRRL 1351 Fungal Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name AXCAW
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2926016  (Link to NCBI )
Experiment Title Circinella umbellata NRRL 1351 Fungal Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BGYYX
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2926017  (Link to NCBI )
Experiment Title Circinella umbellata NRRL 1351 Fungal Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name AXCAW
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2926028  (Link to NCBI )
Experiment Title Circinella umbellata NRRL 1351 Fungal Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BGYYX
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2926029  (Link to NCBI )
Experiment Title Circinella umbellata NRRL 1351 Fungal Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BGYYX
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2926018  (Link to NCBI )
Experiment Title Circinella umbellata NRRL 1351 Fungal Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name AXCAW
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2926019  (Link to NCBI )
Experiment Title Circinella umbellata NRRL 1351 Fungal Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name AXCAW
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2926030  (Link to NCBI )
Experiment Title Circinella umbellata NRRL 1351 Fungal Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BGYYX
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2926020  (Link to NCBI )
Experiment Title Circinella umbellata NRRL 1351 Fungal Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name AXCAW
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2926031  (Link to NCBI )
Experiment Title Circinella umbellata NRRL 1351 Fungal Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BGYYX
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2926021  (Link to NCBI )
Experiment Title Circinella umbellata NRRL 1351 Fungal Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name AXCAW
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2926032  (Link to NCBI )
Experiment Title Circinella umbellata NRRL 1351 Fungal Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BGYYX
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2926022  (Link to NCBI )
Experiment Title Circinella umbellata NRRL 1351 Fungal Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name AXCAW
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2926033  (Link to NCBI )
Experiment Title Circinella umbellata NRRL 1351 Fungal Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BGYYX
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2926034  (Link to NCBI )
Experiment Title Circinella umbellata NRRL 1351 Fungal Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name AXCAW
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2926023  (Link to NCBI )
Experiment Title Circinella umbellata NRRL 1351 Fungal Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name AXCAW
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2926024  (Link to NCBI )
Experiment Title Circinella umbellata NRRL 1351 Fungal Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name AXCAW
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2926035  (Link to NCBI )
Experiment Title Circinella umbellata NRRL 1351 Fungal Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name AXCAW
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2926025  (Link to NCBI )
Experiment Title Circinella umbellata NRRL 1351 Fungal Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name AXCAW
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2926036  (Link to NCBI )
Experiment Title Circinella umbellata NRRL 1351 Fungal Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name AXCAW
Library Layout SINGLE
Library Instrument PAC_BIO_RS
PROJECT COMPOSITION
Study 1000 Fungal Genomes
Organism Circinella umbellata NRRL1351
Analysis Projects
  
Number of Analysis Projects (AP)
0  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) PacBio RS
Illumina HiSeq 2500-1TB
PacBio RS II
Library Method (MIGS-28)
PacBio 6-10kb w/ Blue Pippin Size Selection, Tubes  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0120372
Organism Name
Circinella umbellata NRRL1351  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
FUNGI-MUCOROMYCOTA  
Genus
Circinella  
Genus Synonyms
  
Species
Circinella umbellata  
Subspecies
  
Species Synonyms
  
Strain
NRRL1351  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
NRRL1351  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 101103
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
Fungi  
NCBI Phylum
Mucoromycota  
NCBI Class
Mucoromycetes  
NCBI Order
Mucorales  
NCBI Family
Lichtheimiaceae  
NCBI Genus
Circinella  
NCBI Species
Circinella umbellata  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?

 

 

 

 

 

  Changing the SP Sequencing Strategy will also effect these items:

 

Do you want to continue with this Sequencing Strategy change?