PROJECT INFORMATION | |
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GOLD Project ID
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Gp0122638
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Project Name
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Legionella fallonii LLAP-10 ATCC700992
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Other Names
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Legacy GOLD ID
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NCBI BioProject Name | Genomics of Legionella species |
NCBI BioProject Accession
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PRJEB7322 |
NCBI Locus Tag
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LFA
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NCBI BioSample Accession
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SAMEA2785663 |
Source Sample ID
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PI | Unknown |
Added By | JGI automated process on 2015-10-15 |
Last Modified By | |
Project Comments |
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Project Status
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Complete and Published
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Project Relevance
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Sequencing Center
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Institut Pasteur, Paris, France
(France)
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Collaborating Institute
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Funding Agency
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Project Description
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In this study we show that the comparative analyses of 11 Legionella genomes belonging to five species revealed a highly different genome content with >60% of species-specific genes. These comprise a complete prophage in L. micdadei, the first identified in a Legionella genome and the findng that L. fallonii synthesizes cellulose and an active chitin deacetylase. Mobile elements are abundant. Many encode type IV secretion systems for conjugative transfer pointing to their iportance for adaptation. Although the Dot/Icm secretion system is conserved the core set of substrates is small, as only 24 out of >300 described Dot/Icm effector genes are present in all species. New eukaryotic motifs including thaumatin, synaptobrevin or clathrin/coatomer adaptine like domains were identified. Key factors such as proteins involved in oxygen binding, iron storage, host membrane transport and certain Dot/Icm substrates are specific features of disease related strains.
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Is JGI Project |
No
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Project Information Visibility
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Public |
PROJECT TYPE | |
Specimen
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Organism |
Nucleic Acid
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DNA |
Sequencing Strategy
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Whole Genome Sequencing
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EXTERNAL PROJECT LINKS | |
JGI Data Utilization Status
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JGI Award DOI
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Genome Publications
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Other Publications
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Ignored Publications
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Unassigned Publications
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PLoS genetics: 6(2):e1000851 Analysis of the Legionella longbeachae genome and transcriptome uncovers unique strategies to cause Legionnaires' disease. PubMed: 20174605 DOI: 10.1371/journal.pgen.1000851 Cold Spring Harbor perspectives in medicine: Genome dynamics in Legionella: the basis of versatility and adaptation to intracellular replication. PubMed: 23732852 DOI: 10.1101/cshperspect.a009993 Show more publications...
BMC genomics: Extensive recombination events and horizontal gene transfer shaped the Legionella pneumophila genomes.
PubMed: 22044686 DOI: 10.1186/1471-2164-12-536 Nature genetics: Evidence in the Legionella pneumophila genome for exploitation of host cell functions and high genome plasticity. PubMed: 15467720 |
SRA Experiment |
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PROJECT COMPOSITION | |
Study |
Comparative analyses of Legionella species to identify genetic features of strains causing Legionnaires' disease |
Organism |
Legionella fallonii LLAP-10 ATCC700992 |
Analysis Projects |
Legionella fallonii LLAP-10 ATCC700992 |
Number of Analysis Projects (AP) |
1 |
Number of Derived Analyis Projects (DAP) |
0
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SEQUENCING INFORMATION | |
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Sequencing Status
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Complete |
Sequencing Quality (MIGS-31) |
Level 6: Finished |
Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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GC Percent |
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Chromosome Count |
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Plasmid Count |
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ORGANISM NAME | |
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GOLD Organism ID |
Go0117686 |
Organism Name |
Legionella fallonii LLAP-10 ATCC700992
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Other names (alias, synonyms, short names, common names) |
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Organism Domain |
BACTERIAL
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Phylogeny |
PROTEOBACTERIA-GAMMA
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Genus |
Legionella
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Genus Synonyms |
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Species |
Legionella fallonii
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Subspecies |
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Species Synonyms |
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Strain |
ATCC700992
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Strain Synonyms |
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Serovar/Cultivar |
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Culture Collection ID |
ATCC700992
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Type Strain |
Yes
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Exemplar DOI |
10.1601/ex.2354
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Exemplar Name |
Legionella fallonii
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Taxon DOI |
10.1601/tx.2354
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Biosafety Level |
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Organism Comments |
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Cultured |
Yes
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Culture Type |
Isolate
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Organism Type |
Natural
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Uncultured Type |
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Commercial Strain |
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Commercial Strain Comments |
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ORGANISM TAXONOMY
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NCBI Taxonomy ID |
1212491 |
NCBI Superkingdom |
Bacteria
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NCBI Kingdom |
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NCBI Phylum |
Pseudomonadota
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NCBI Class |
Gammaproteobacteria
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NCBI Order |
Legionellales
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NCBI Family |
Legionellaceae
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NCBI Genus |
Legionella
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NCBI Species |
Legionella fallonii
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ISOLATION CLASSIFICATION | |
Ecosystem |
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Ecosystem Category |
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Ecosystem Type |
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Ecosystem Subtype |
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Specific Ecosystem |
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ORGANISM EXTERNAL REFERENCES | |
Strain Info ID |
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Genbank 16S ID |
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GENERAL PROPERTIES | |
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Oxygen Requirement |
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Cell Shape |
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Motility |
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Sporulation |
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Temperature Range |
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Salinity |
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pH |
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Cell Diameter |
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Cell Length |
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Color |
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Gram Staining |
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Biotic Relationships |
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Symbiotic Physical Interaction |
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Symbiotic Relationship |
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Symbiont Name |
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Symbiont Taxon ID |
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Cell Arrangements |
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Diseases |
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Known Habitats |
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Metabolisms |
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Phenotypes |
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Energy Sources |
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