PROJECT INFORMATION
GOLD Project ID
Gp0122638  
Project Name
Legionella fallonii LLAP-10 ATCC700992  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Genomics of Legionella species
NCBI BioProject Accession PRJEB7322
NCBI Locus Tag
LFA  
NCBI BioSample Accession SAMEA2785663
Source Sample ID
PI Unknown
Added By JGI automated process on 2015-10-15
Last Modified By
Project Comments
  
Project Status
Complete and Published  
Project Relevance
  
Sequencing Center Institut Pasteur, Paris, France (France)
Collaborating Institute
  
Funding Agency
  
Project Description
In this study we show that the comparative analyses of 11 Legionella genomes belonging to five species revealed a highly different genome content with >60% of species-specific genes. These comprise a complete prophage in L. micdadei, the first identified in a Legionella genome and the findng that L. fallonii synthesizes cellulose and an active chitin deacetylase. Mobile elements are abundant. Many encode type IV secretion systems for conjugative transfer pointing to their iportance for adaptation. Although the Dot/Icm secretion system is conserved the core set of substrates is small, as only 24 out of >300 described Dot/Icm effector genes are present in all species. New eukaryotic motifs including thaumatin, synaptobrevin or clathrin/coatomer adaptine like domains were identified. Key factors such as proteins involved in oxygen binding, iron storage, host membrane transport and certain Dot/Icm substrates are specific features of disease related strains.  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications PLoS genetics: 6(2):e1000851 Analysis of the Legionella longbeachae genome and transcriptome uncovers unique strategies to cause Legionnaires' disease.
PubMed: 20174605 DOI: 10.1371/journal.pgen.1000851
Cold Spring Harbor perspectives in medicine: Genome dynamics in Legionella: the basis of versatility and adaptation to intracellular replication.
PubMed: 23732852 DOI: 10.1101/cshperspect.a009993
Show more publications...

BMC genomics: Extensive recombination events and horizontal gene transfer shaped the Legionella pneumophila genomes.
PubMed: 22044686 DOI: 10.1186/1471-2164-12-536
Nature genetics: Evidence in the Legionella pneumophila genome for exploitation of host cell functions and high genome plasticity.
PubMed: 15467720
SRA Experiment
  
PROJECT COMPOSITION
Study Comparative analyses of Legionella species to identify genetic features of strains causing Legionnaires' disease
Organism Legionella fallonii LLAP-10 ATCC700992
Analysis Projects Legionella fallonii LLAP-10 ATCC700992
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0117686
Organism Name
Legionella fallonii LLAP-10 ATCC700992  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Legionella  
Genus Synonyms
  
Species
Legionella fallonii  
Subspecies
  
Species Synonyms
  
Strain
ATCC700992  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
ATCC700992  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.2354  
Exemplar Name
Legionella fallonii  
Taxon DOI
10.1601/tx.2354  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1212491
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Pseudomonadota  
NCBI Class
Gammaproteobacteria  
NCBI Order
Legionellales  
NCBI Family
Legionellaceae  
NCBI Genus
Legionella  
NCBI Species
Legionella fallonii  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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