PROJECT INFORMATION
GOLD Project ID
Gp0112973  
Project Name
Sporomusa malonica DSM 5090  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Sporomusa malonica DSM 5090
NCBI BioProject ID 303640
NCBI BioProject Accession PRJNA303640
NCBI Locus Tag
ATJ27  
NCBI BioSample Accession SAMN04488500
PI Markus Göker
Added By JGI automated process on 2015-04-06
Last Modified By JGI automated process on 2019-09-30
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Genomic Encyclopedia of Archaeal and Bacterial Type Strains, Phase II: from individual species to whole genera  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX2136236  (Link to NCBI )
Experiment Title Sporomusa malonica DSM 5090
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name AHCYG
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
PROJECT COMPOSITION
Study Genomic Encyclopedia of Archaeal and Bacterial Type Strains, Phase II (KMG-II): from individual species to whole genera
Organism Sporomusa malonica DSM 5090
Analysis Projects Sporomusa malonica DSM 5090
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500-1TB
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Plates  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0013328
Organism Name
Sporomusa malonica DSM 5090  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Sporomusa  
Genus Synonyms
  
Species
Sporomusa malonica  
Subspecies
  
Species Synonyms
  
Strain
DSM 5090  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 5090  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.4436  
Exemplar Name
Sporomusa malonica  
Taxon DOI
10.1601/tx.4436  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1123287
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Negativicutes  
NCBI Order
Selenomonadales  
NCBI Family
Sporomusaceae  
NCBI Genus
Sporomusa  
NCBI Species
Sporomusa malonica  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 114665
Genbank 16S ID AJ279799
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Curved-shaped  
Motility
Motile  
Sporulation
Sporulating  
Temperature Range
Mesophile  
Salinity
  
pH
6  
Cell Diameter
0.7 um  
Cell Length
2.6-4.8 um  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Pairs
Diseases
  
Known Habitats Mud
Aquatic
Fresh water
Metabolisms
  
Phenotypes
  
Energy Sources Chemoorganotroph

 

 

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